Wall clock time and date at job start Tue Mar 31 2020 06:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.47057 * 2 1 4 4 C 1.42898 * 114.00360 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47319 * 180.02562 * 4 3 2 6 6 O 1.21286 * 119.99860 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99759 * 180.02562 * 5 4 3 8 8 C 1.48238 * 126.41780 * 359.68184 * 7 5 4 9 9 C 1.53741 * 105.90476 * 211.09212 * 8 7 5 10 10 H 1.09005 * 112.28451 * 104.65782 * 9 8 7 11 11 C 1.54460 * 109.01451 * 229.74939 * 9 8 7 12 12 N 1.48332 * 104.32298 * 137.92646 * 11 9 8 13 13 C 1.36932 * 128.19971 * 138.19440 * 12 11 9 14 14 H 1.08003 * 119.99915 * 344.10515 * 13 12 11 15 15 C 1.38809 * 120.00530 * 164.10818 * 13 12 11 16 16 N 1.31626 * 119.99745 * 350.53602 * 15 13 12 17 17 Si 1.86805 * 120.00592 * 170.53392 * 15 13 12 18 18 H 1.48498 * 109.46706 * 59.99668 * 17 15 13 19 19 H 1.48496 * 109.47251 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46820 * 299.99921 * 17 15 13 21 21 C 1.48336 * 103.60221 * 318.19495 * 12 11 9 22 22 C 1.54447 * 104.32786 * 41.80846 * 21 12 11 23 23 C 1.52994 * 112.30078 * 96.98453 * 22 21 12 24 24 C 1.47201 * 126.69916 * 179.97438 * 7 5 4 25 25 H 1.08994 * 109.47082 * 60.00066 * 1 2 3 26 26 H 1.09004 * 109.46625 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46970 * 299.99728 * 1 2 3 28 28 H 1.09000 * 109.46970 * 240.00272 * 2 1 3 29 29 H 1.08997 * 109.47584 * 119.99970 * 2 1 3 30 30 H 1.09000 * 109.46818 * 60.00272 * 4 3 2 31 31 H 1.09002 * 109.46832 * 300.00059 * 4 3 2 32 32 H 1.09003 * 109.59445 * 92.40454 * 8 7 5 33 33 H 1.08996 * 111.04721 * 330.55849 * 8 7 5 34 34 H 1.09002 * 110.46125 * 256.63489 * 11 9 8 35 35 H 1.08990 * 110.46222 * 19.08902 * 11 9 8 36 36 H 0.97000 * 120.00038 * 180.02562 * 16 15 13 37 37 H 1.09008 * 110.45802 * 160.51975 * 21 12 11 38 38 H 1.09002 * 110.46005 * 282.96675 * 21 12 11 39 39 H 1.09001 * 109.47357 * 302.35333 * 23 22 21 40 40 H 1.09002 * 109.46969 * 62.35070 * 23 22 21 41 41 H 1.09005 * 109.47198 * 182.35305 * 23 22 21 42 42 H 1.08998 * 110.06655 * 29.37979 * 24 7 5 43 43 H 1.09007 * 110.06171 * 267.86441 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8194 2.9163 0.0012 6 8 2.9608 3.7730 0.0006 7 7 5.1209 3.2664 0.0013 8 6 6.2806 2.3431 0.0074 9 6 7.3977 3.0750 0.7689 10 1 7.5378 2.6818 1.7759 11 6 8.6955 3.0211 -0.0670 12 7 9.2700 4.3828 0.0590 13 6 10.5798 4.7352 0.2465 14 1 11.2963 3.9963 0.5739 15 6 10.9869 6.0421 0.0159 16 7 10.1654 6.8957 -0.5577 17 14 12.7005 6.5894 0.5196 18 1 13.7118 5.7677 -0.1925 19 1 12.8868 8.0199 0.1670 20 1 12.8646 6.4159 1.9853 21 6 8.0896 5.2724 -0.0662 22 6 6.9944 4.5742 0.7694 23 6 6.8877 5.1492 2.1832 24 6 5.6637 4.6346 0.0013 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8340 0.9766 -0.8892 31 1 3.8333 0.9768 0.8908 32 1 6.5948 2.1440 -1.0172 33 1 6.0344 1.4087 0.5117 34 1 9.3813 2.2788 0.3415 35 1 8.4684 2.7961 -1.1090 36 1 10.4500 7.8089 -0.7192 37 1 8.3105 6.2584 0.3428 38 1 7.7825 5.3535 -1.1089 39 1 7.8510 5.0599 2.6854 40 1 6.6032 6.2000 2.1275 41 1 6.1331 4.5976 2.7439 42 1 4.9724 5.3113 0.5035 43 1 5.8372 4.9681 -1.0219 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101114941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:51 Heat of formation + Delta-G solvation = -48.587541 kcal Electronic energy + Delta-G solvation = -22959.435743 eV Core-core repulsion = 19619.661620 eV Total energy + Delta-G solvation = -3339.774123 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.24662 -38.73119 -37.45477 -34.94869 -32.60062 -31.76144 -31.34247 -29.62160 -28.27725 -26.27442 -25.23251 -25.01477 -23.02338 -22.40795 -20.57712 -19.28843 -18.43746 -17.31079 -16.79382 -16.64670 -16.25121 -15.53402 -15.28317 -14.72108 -14.37324 -14.03757 -13.85071 -13.49960 -13.23359 -12.95388 -12.69996 -12.68537 -12.33102 -12.16422 -11.74037 -11.68771 -11.51273 -11.45973 -11.38990 -10.90805 -10.80334 -10.77524 -10.19814 -10.05123 -10.00319 -9.91127 -9.88029 -9.65980 -9.51696 -8.71192 -8.48660 -6.90211 -5.82442 -3.17584 2.70283 2.72667 3.36222 3.41355 3.42387 3.77520 4.42858 4.49278 4.76318 4.85087 4.87072 4.99141 5.02665 5.05399 5.08799 5.20382 5.38340 5.40716 5.53759 5.60548 5.64074 5.64629 5.70067 5.86680 5.91762 6.03611 6.10529 6.20416 6.25008 6.30722 6.46240 6.62168 6.69003 6.74634 6.87961 6.91890 7.25050 7.49598 7.67217 7.68494 8.16902 8.28452 9.06333 9.69962 10.47793 11.31175 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.046676 B = 0.003415 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.738384 B = 8196.975306 C = 8452.508078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.050 3.950 5 C 0.528 3.472 6 O -0.528 6.528 7 N -0.615 5.615 8 C 0.104 3.896 9 C -0.110 4.110 10 H 0.084 0.916 11 C 0.131 3.869 12 N -0.593 5.593 13 C -0.228 4.228 14 H 0.075 0.925 15 C -0.004 4.004 16 N -0.914 5.914 17 Si 0.911 3.089 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.284 1.284 21 C 0.167 3.833 22 C -0.094 4.094 23 C -0.117 4.117 24 C 0.120 3.880 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.027 0.973 36 H 0.255 0.745 37 H 0.092 0.908 38 H 0.025 0.975 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.041 0.959 42 H 0.075 0.925 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.118 -13.469 2.128 18.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.284 6.284 4 C -0.029 4.029 5 C 0.315 3.685 6 O -0.404 6.404 7 N -0.350 5.350 8 C -0.018 4.018 9 C -0.131 4.131 10 H 0.103 0.897 11 C 0.004 3.996 12 N -0.315 5.315 13 C -0.356 4.356 14 H 0.093 0.907 15 C -0.201 4.201 16 N -0.560 5.560 17 Si 0.741 3.259 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.211 1.211 21 C 0.040 3.960 22 C -0.097 4.097 23 C -0.174 4.174 24 C -0.002 4.002 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.110 0.890 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.093 0.907 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.617 -12.656 2.083 17.992 hybrid contribution 1.154 -0.049 0.153 1.166 sum -11.463 -12.705 2.237 17.257 Atomic orbital electron populations 1.21728 0.93451 1.02144 1.03474 1.22539 0.95942 0.83498 1.00163 1.88016 1.18724 1.26228 1.95421 1.22155 0.83555 0.94841 1.02399 1.19796 0.81160 0.90354 0.77156 1.90718 1.48500 1.51898 1.49311 1.48855 1.04320 1.09167 1.72698 1.22519 0.85640 0.92748 1.00936 1.23090 0.95479 0.95011 0.99517 0.89729 1.21854 0.91993 0.90052 0.95683 1.45035 1.02914 0.99498 1.84093 1.18913 0.83372 0.94856 1.38434 0.90687 1.24890 0.98099 0.97227 0.99907 1.69872 1.35487 1.04971 1.45626 0.86221 0.83686 0.77605 0.78355 1.21028 1.21560 1.21093 1.21783 0.83401 0.95980 0.94807 1.22543 0.94841 0.95586 0.96714 1.21541 1.01325 0.99907 0.94625 1.22221 0.94551 0.82630 1.00760 0.91689 0.91030 0.91696 0.93208 0.93231 0.90376 0.90438 0.90810 0.91063 0.93292 0.95538 0.93469 0.89030 0.95748 0.91796 0.92786 0.94021 0.90684 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.06 0.49 6.66 37.16 0.25 0.74 16 3 O -0.37 -4.86 9.88 -55.14 -0.54 -5.41 16 4 C 0.05 0.59 5.41 36.01 0.19 0.79 16 5 C 0.53 8.41 7.95 -10.99 -0.09 8.32 16 6 O -0.53 -10.67 16.73 -14.36 -0.24 -10.91 16 7 N -0.62 -9.36 3.34 -170.78 -0.57 -9.93 16 8 C 0.10 1.35 6.42 -2.70 -0.02 1.33 16 9 C -0.11 -1.74 3.71 -88.28 -0.33 -2.07 16 10 H 0.08 1.27 7.93 -51.93 -0.41 0.86 16 11 C 0.13 2.47 6.76 -2.27 -0.02 2.45 16 12 N -0.59 -14.21 3.37 -168.47 -0.57 -14.78 16 13 C -0.23 -6.05 10.37 -15.06 -0.16 -6.21 16 14 H 0.08 1.93 7.85 -52.48 -0.41 1.51 16 15 C 0.00 -0.10 5.40 -17.43 -0.09 -0.20 16 16 N -0.91 -25.99 10.89 55.49 0.60 -25.38 16 17 Si 0.91 21.37 29.56 -169.99 -5.03 16.35 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.17 3.75 5.11 -2.27 -0.01 3.74 16 22 C -0.09 -1.68 1.08 -152.16 -0.16 -1.84 16 23 C -0.12 -1.98 8.61 37.15 0.32 -1.66 16 24 C 0.12 2.04 6.24 -3.26 -0.02 2.02 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.73 7.87 -51.93 -0.41 0.32 16 32 H 0.07 0.93 7.11 -51.93 -0.37 0.56 16 33 H 0.07 0.70 7.38 -51.93 -0.38 0.32 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.03 0.50 7.17 -51.93 -0.37 0.12 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.09 2.34 6.24 -51.92 -0.32 2.02 16 38 H 0.02 0.58 7.17 -51.93 -0.37 0.21 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.31 7.63 -51.93 -0.40 0.92 16 43 H 0.07 1.27 7.11 -51.93 -0.37 0.90 16 LS Contribution 342.28 15.07 5.16 5.16 Total: -1.00 -32.22 342.28 -8.12 -40.33 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -7.18 Total: -2.06 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 0.25 Total: 6.62 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.53 Total: -50.09 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.78 Total: -16.32 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.22 -8.12 -40.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101114941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.255 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds