Wall clock time and date at job start Tue Mar 31 2020 06:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.47057 * 2 1 4 4 C 1.42898 * 114.00360 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47319 * 180.02562 * 4 3 2 6 6 O 1.21286 * 119.99860 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99759 * 180.02562 * 5 4 3 8 8 C 1.48238 * 126.41780 * 359.68184 * 7 5 4 9 9 C 1.53741 * 105.90476 * 211.09212 * 8 7 5 10 10 H 1.09005 * 112.28451 * 104.65782 * 9 8 7 11 11 C 1.54460 * 109.01451 * 229.74939 * 9 8 7 12 12 N 1.48332 * 104.32298 * 137.92646 * 11 9 8 13 13 C 1.36932 * 128.19971 * 138.19440 * 12 11 9 14 14 H 1.08003 * 119.99915 * 344.10515 * 13 12 11 15 15 C 1.38809 * 120.00530 * 164.10818 * 13 12 11 16 16 N 1.31626 * 119.99745 * 350.53602 * 15 13 12 17 17 Si 1.86805 * 120.00592 * 170.53392 * 15 13 12 18 18 H 1.48498 * 109.46706 * 59.99668 * 17 15 13 19 19 H 1.48496 * 109.47251 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46820 * 299.99921 * 17 15 13 21 21 C 1.48336 * 103.60221 * 318.19495 * 12 11 9 22 22 C 1.54447 * 104.32786 * 41.80846 * 21 12 11 23 23 C 1.52994 * 112.30078 * 96.98453 * 22 21 12 24 24 C 1.47201 * 126.69916 * 179.97438 * 7 5 4 25 25 H 1.08994 * 109.47082 * 60.00066 * 1 2 3 26 26 H 1.09004 * 109.46625 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46970 * 299.99728 * 1 2 3 28 28 H 1.09000 * 109.46970 * 240.00272 * 2 1 3 29 29 H 1.08997 * 109.47584 * 119.99970 * 2 1 3 30 30 H 1.09000 * 109.46818 * 60.00272 * 4 3 2 31 31 H 1.09002 * 109.46832 * 300.00059 * 4 3 2 32 32 H 1.09003 * 109.59445 * 92.40454 * 8 7 5 33 33 H 1.08996 * 111.04721 * 330.55849 * 8 7 5 34 34 H 1.09002 * 110.46125 * 256.63489 * 11 9 8 35 35 H 1.08990 * 110.46222 * 19.08902 * 11 9 8 36 36 H 0.97000 * 120.00038 * 180.02562 * 16 15 13 37 37 H 1.09008 * 110.45802 * 160.51975 * 21 12 11 38 38 H 1.09002 * 110.46005 * 282.96675 * 21 12 11 39 39 H 1.09001 * 109.47357 * 302.35333 * 23 22 21 40 40 H 1.09002 * 109.46969 * 62.35070 * 23 22 21 41 41 H 1.09005 * 109.47198 * 182.35305 * 23 22 21 42 42 H 1.08998 * 110.06655 * 29.37979 * 24 7 5 43 43 H 1.09007 * 110.06171 * 267.86441 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8194 2.9163 0.0012 6 8 2.9608 3.7730 0.0006 7 7 5.1209 3.2664 0.0013 8 6 6.2806 2.3431 0.0074 9 6 7.3977 3.0750 0.7689 10 1 7.5378 2.6818 1.7759 11 6 8.6955 3.0211 -0.0670 12 7 9.2700 4.3828 0.0590 13 6 10.5798 4.7352 0.2465 14 1 11.2963 3.9963 0.5739 15 6 10.9869 6.0421 0.0159 16 7 10.1654 6.8957 -0.5577 17 14 12.7005 6.5894 0.5196 18 1 13.7118 5.7677 -0.1925 19 1 12.8868 8.0199 0.1670 20 1 12.8646 6.4159 1.9853 21 6 8.0896 5.2724 -0.0662 22 6 6.9944 4.5742 0.7694 23 6 6.8877 5.1492 2.1832 24 6 5.6637 4.6346 0.0013 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8340 0.9766 -0.8892 31 1 3.8333 0.9768 0.8908 32 1 6.5948 2.1440 -1.0172 33 1 6.0344 1.4087 0.5117 34 1 9.3813 2.2788 0.3415 35 1 8.4684 2.7961 -1.1090 36 1 10.4500 7.8089 -0.7192 37 1 8.3105 6.2584 0.3428 38 1 7.7825 5.3535 -1.1089 39 1 7.8510 5.0599 2.6854 40 1 6.6032 6.2000 2.1275 41 1 6.1331 4.5976 2.7439 42 1 4.9724 5.3113 0.5035 43 1 5.8372 4.9681 -1.0219 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101114941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:50 Heat of formation + Delta-G solvation = -69.068197 kcal Electronic energy + Delta-G solvation = -22960.323851 eV Core-core repulsion = 19619.661620 eV Total energy + Delta-G solvation = -3340.662231 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.55255 -39.94806 -38.47170 -36.51922 -34.28960 -33.02926 -32.33884 -31.18397 -29.35623 -27.96767 -26.69492 -26.42637 -23.92939 -23.64848 -22.17330 -20.51854 -19.86970 -18.75016 -18.20840 -17.52200 -17.32569 -16.75338 -16.60581 -16.33977 -15.81268 -15.40758 -15.25050 -14.94711 -14.37089 -14.22805 -13.92448 -13.63403 -13.59041 -13.25592 -13.21322 -13.10683 -13.00581 -12.68959 -12.46262 -12.40724 -12.28588 -12.15905 -11.90424 -11.71494 -11.53168 -11.48732 -11.28143 -10.82760 -10.69315 -10.64156 -9.75603 -8.84300 -7.86916 -5.22605 1.48180 1.50596 1.53074 1.57004 1.66461 2.51131 2.90168 3.32550 3.37859 3.53476 3.72050 3.94949 3.97643 4.15304 4.18747 4.20768 4.28173 4.32908 4.37290 4.41424 4.53726 4.53897 4.66544 4.75410 4.82664 4.86019 4.93643 4.96733 5.03276 5.05603 5.20795 5.21913 5.28405 5.29354 5.47223 5.49278 5.56255 5.74528 6.14523 6.22779 6.51609 7.04256 7.09274 7.73261 8.52839 9.26025 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.046676 B = 0.003415 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.738384 B = 8196.975306 C = 8452.508078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.404 6.404 4 C 0.056 3.944 5 C 0.522 3.478 6 O -0.582 6.582 7 N -0.612 5.612 8 C 0.109 3.891 9 C -0.099 4.099 10 H 0.103 0.897 11 C 0.128 3.872 12 N -0.618 5.618 13 C -0.232 4.232 14 H 0.083 0.917 15 C -0.063 4.063 16 N -0.947 5.947 17 Si 0.974 3.026 18 H -0.275 1.275 19 H -0.299 1.299 20 H -0.278 1.278 21 C 0.174 3.826 22 C -0.086 4.086 23 C -0.110 4.110 24 C 0.125 3.875 25 H 0.052 0.948 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.062 0.938 35 H 0.032 0.968 36 H 0.247 0.753 37 H 0.053 0.947 38 H 0.000 1.000 39 H 0.049 0.951 40 H 0.046 0.954 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.316 -16.973 3.032 21.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.324 6.324 4 C -0.023 4.023 5 C 0.312 3.688 6 O -0.462 6.462 7 N -0.346 5.346 8 C -0.012 4.012 9 C -0.119 4.119 10 H 0.122 0.878 11 C 0.003 3.997 12 N -0.342 5.342 13 C -0.361 4.361 14 H 0.100 0.900 15 C -0.257 4.257 16 N -0.595 5.595 17 Si 0.802 3.198 18 H -0.201 1.201 19 H -0.225 1.225 20 H -0.204 1.204 21 C 0.048 3.952 22 C -0.089 4.089 23 C -0.167 4.167 24 C 0.002 3.998 25 H 0.071 0.929 26 H 0.116 0.884 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.101 0.899 33 H 0.138 0.862 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.018 0.982 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.806 -16.232 2.994 20.891 hybrid contribution 1.189 0.999 -0.163 1.561 sum -11.618 -15.232 2.830 19.365 Atomic orbital electron populations 1.21785 0.93342 1.03497 1.02338 1.22799 0.96153 0.81854 1.01909 1.87979 1.19617 1.28994 1.95803 1.22239 0.83400 0.91350 1.05274 1.20721 0.80399 0.92085 0.75607 1.90694 1.49911 1.53843 1.51739 1.48867 1.05054 1.08501 1.72208 1.22649 0.83477 0.93412 1.01668 1.23018 0.94928 0.93570 1.00408 0.87838 1.22070 0.93411 0.87653 0.96609 1.45324 1.02557 1.02027 1.84272 1.19311 0.84789 0.95010 1.36993 0.89957 1.25673 1.01608 0.97597 1.00800 1.70077 1.37146 1.04774 1.47540 0.85223 0.79841 0.76510 0.78179 1.20110 1.22520 1.20375 1.21541 0.84836 0.94878 0.93985 1.22333 0.93459 0.96840 0.96220 1.21464 1.01136 0.99970 0.94136 1.21945 0.93966 0.84228 0.99649 0.92890 0.88410 0.92804 0.91447 0.91305 0.87404 0.87108 0.89946 0.86202 0.91951 0.95052 0.94379 0.92902 0.98245 0.93235 0.93465 0.91673 0.91688 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 10.28 71.98 0.74 -1.34 16 2 C 0.05 0.70 6.66 71.98 0.48 1.18 16 3 O -0.40 -9.75 9.88 -129.94 -1.28 -11.03 16 4 C 0.06 1.09 5.41 71.24 0.39 1.48 16 5 C 0.52 15.51 7.95 87.66 0.70 16.21 16 6 O -0.58 -23.43 16.73 15.99 0.27 -23.16 16 7 N -0.61 -17.18 3.34 -812.62 -2.71 -19.89 16 8 C 0.11 2.36 6.42 86.29 0.55 2.91 16 9 C -0.10 -2.83 3.71 -9.28 -0.03 -2.86 16 10 H 0.10 2.66 7.93 -2.38 -0.02 2.64 16 11 C 0.13 4.56 6.76 86.52 0.58 5.15 16 12 N -0.62 -29.77 3.37 -686.92 -2.32 -32.08 16 13 C -0.23 -12.39 10.37 84.03 0.87 -11.52 16 14 H 0.08 4.16 7.85 -2.91 -0.02 4.14 16 15 C -0.06 -3.49 5.40 84.86 0.46 -3.03 16 16 N -0.95 -56.10 10.89 21.65 0.24 -55.86 16 17 Si 0.97 44.60 29.56 68.60 2.03 46.63 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 C 0.17 8.11 5.11 86.52 0.44 8.56 16 22 C -0.09 -3.02 1.08 -50.66 -0.05 -3.07 16 23 C -0.11 -3.67 8.61 71.98 0.62 -3.05 16 24 C 0.13 4.25 6.24 86.50 0.54 4.79 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 30 H 0.11 1.46 8.14 -2.39 -0.02 1.45 16 31 H 0.11 1.43 7.87 -2.39 -0.02 1.41 16 32 H 0.08 1.71 7.11 -2.39 -0.02 1.69 16 33 H 0.12 1.54 7.38 -2.39 -0.02 1.52 16 34 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.03 1.10 7.17 -2.39 -0.02 1.09 16 36 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 37 H 0.05 2.86 6.24 -2.38 -0.01 2.85 16 38 H 0.00 -0.02 7.17 -2.39 -0.02 -0.03 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 42 H 0.06 2.32 7.63 -2.39 -0.02 2.30 16 43 H 0.06 2.11 7.11 -2.38 -0.02 2.09 16 Total: -1.00 -73.93 342.28 3.48 -70.45 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.98 Total: 9.56 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 6.28 Total: 15.39 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -4.79 Total: -107.84 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -1.02 Total: -34.19 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -73.93 3.48 -70.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101114941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.386 kcal (2) G-P(sol) polarization free energy of solvation -73.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds