Wall clock time and date at job start Tue Mar 31 2020 05:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50708 * 120.00224 * 2 1 4 4 O 1.42898 * 109.46832 * 134.99971 * 3 2 1 5 5 C 1.42900 * 113.99575 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47361 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99488 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00290 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 5 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 H 1.08999 * 110.88696 * 51.11497 * 10 9 8 12 12 C 1.54913 * 111.00482 * 287.19269 * 10 9 8 13 13 N 1.47418 * 104.83646 * 204.91582 * 12 10 9 14 14 C 1.36937 * 125.65451 * 204.08524 * 13 12 10 15 15 H 1.08002 * 119.99201 * 0.02562 * 14 13 12 16 16 C 1.38812 * 120.00689 * 180.02562 * 14 13 12 17 17 N 1.31622 * 119.99545 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00200 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47467 * 89.99541 * 18 16 14 20 20 H 1.48500 * 109.47092 * 209.99608 * 18 16 14 21 21 H 1.48499 * 109.47376 * 329.99565 * 18 16 14 22 22 C 1.47022 * 108.70212 * 24.12905 * 13 12 10 23 23 C 1.54323 * 107.27316 * 358.94056 * 22 13 12 24 24 H 1.08999 * 110.72315 * 96.16525 * 23 22 13 25 25 C 1.52996 * 110.87391 * 219.37425 * 23 22 13 26 26 H 1.07994 * 120.00221 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99846 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99846 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46755 * 14.99730 * 3 2 1 30 30 H 1.08994 * 109.46862 * 255.00255 * 3 2 1 31 31 H 1.08998 * 109.47421 * 59.99896 * 5 4 3 32 32 H 1.09002 * 109.47461 * 300.00159 * 5 4 3 33 33 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 35 35 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 36 36 H 1.08998 * 110.36634 * 323.75648 * 12 10 9 37 37 H 1.09003 * 110.36516 * 86.07315 * 12 10 9 38 38 H 0.96992 * 119.99683 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.88679 * 239.52692 * 22 13 12 40 40 H 1.08999 * 109.88236 * 118.35898 * 22 13 12 41 41 H 1.09006 * 109.47078 * 173.60681 * 25 23 22 42 42 H 1.08998 * 109.47155 * 293.60548 * 25 23 22 43 43 H 1.09004 * 109.47360 * 53.61303 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9077 2.4352 1.0328 6 6 4.9941 2.2567 2.0619 7 8 5.0897 1.2102 2.6674 8 7 5.8588 3.2604 2.3102 9 6 6.9186 3.0846 3.3062 10 6 7.7578 4.3612 3.3885 11 1 7.1220 5.2362 3.5234 12 6 8.6581 4.5155 2.1373 13 7 9.7853 5.3538 2.5844 14 6 10.5707 6.1322 1.7767 15 1 10.3846 6.1663 0.7134 16 6 11.6058 6.8775 2.3245 17 7 11.8321 6.8362 3.6205 18 14 12.6774 7.9387 1.2225 19 1 12.0869 9.2972 1.1173 20 1 14.0411 8.0353 1.8026 21 1 12.7564 7.3274 -0.1285 22 6 9.9274 5.2148 4.0412 23 6 8.8135 4.2608 4.5213 24 1 9.1897 3.2415 4.6084 25 6 8.2261 4.7346 5.8522 26 1 -0.5400 -0.9352 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3855 2.1161 0.2659 30 1 2.4755 1.4868 -0.9926 31 1 3.2678 3.2694 1.3205 32 1 4.3580 2.6408 0.0617 33 1 5.7820 4.0975 1.8261 34 1 6.4722 2.8798 4.2794 35 1 7.5555 2.2492 3.0156 36 1 9.0178 3.5413 1.8063 37 1 8.1112 5.0114 1.3354 38 1 12.5551 7.3572 4.0033 39 1 9.8137 6.1877 4.5193 40 1 10.9042 4.7940 4.2799 41 1 7.3694 4.1130 6.1130 42 1 8.9833 4.6555 6.6322 43 1 7.9068 5.7727 5.7594 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101816906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:25 Heat of formation + Delta-G solvation = -42.252074 kcal Electronic energy + Delta-G solvation = -21840.014584 eV Core-core repulsion = 18500.515187 eV Total energy + Delta-G solvation = -3339.499397 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.84048 -38.31054 -37.66557 -34.66591 -34.14792 -32.95789 -30.74637 -29.99647 -28.14673 -26.11351 -25.72005 -24.78436 -22.73570 -20.87463 -20.28551 -20.01344 -19.19661 -17.42533 -17.06625 -16.72415 -16.62928 -15.75203 -15.31803 -15.12606 -14.61687 -14.13973 -14.06367 -13.70412 -13.38743 -13.14101 -12.92897 -12.52800 -12.49047 -12.40207 -11.80172 -11.68057 -11.40285 -11.32747 -11.21905 -10.83051 -10.78647 -10.30000 -10.18366 -10.01644 -9.99216 -9.90602 -9.71198 -9.64691 -9.52065 -8.97586 -8.61554 -6.84348 -5.72460 -3.06089 1.77109 2.60832 2.81533 3.38389 3.43487 3.45609 3.85297 4.47648 4.56092 4.71273 4.75892 4.87756 4.91472 5.03518 5.10197 5.14168 5.20601 5.32244 5.49628 5.52218 5.55767 5.75477 5.86439 6.01876 6.09877 6.17999 6.20455 6.25913 6.27926 6.42117 6.48193 6.55816 6.61712 6.73154 6.78467 6.93555 7.51494 7.55507 7.63745 7.82793 8.22901 8.24961 9.20852 9.81193 10.47392 11.39112 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027107 B = 0.002847 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.699840 B = 9832.582908 C =10669.599511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.149 4.149 3 C 0.086 3.914 4 O -0.360 6.360 5 C 0.043 3.957 6 C 0.511 3.489 7 O -0.524 6.524 8 N -0.723 5.723 9 C 0.134 3.866 10 C -0.113 4.113 11 H 0.081 0.919 12 C 0.142 3.858 13 N -0.607 5.607 14 C -0.229 4.229 15 H 0.077 0.923 16 C -0.009 4.009 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.184 3.816 23 C -0.111 4.111 24 H 0.068 0.932 25 C -0.134 4.134 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.118 0.882 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.402 0.598 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.019 0.981 37 H 0.035 0.965 38 H 0.252 0.748 39 H 0.049 0.951 40 H 0.041 0.959 41 H 0.045 0.955 42 H 0.053 0.947 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.965 -7.324 -4.380 20.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.167 4.167 3 C 0.009 3.991 4 O -0.278 6.278 5 C -0.037 4.037 6 C 0.296 3.704 7 O -0.400 6.400 8 N -0.376 5.376 9 C 0.011 3.989 10 C -0.132 4.132 11 H 0.099 0.901 12 C 0.015 3.985 13 N -0.333 5.333 14 C -0.357 4.357 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.569 5.569 18 Si 0.743 3.257 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.059 3.941 23 C -0.131 4.131 24 H 0.086 0.914 25 C -0.192 4.192 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.136 0.864 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.236 0.764 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.037 0.963 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.651 -8.114 -3.796 20.691 hybrid contribution 0.569 1.272 -0.994 1.712 sum -18.082 -6.842 -4.790 19.918 Atomic orbital electron populations 1.23833 0.95500 1.02306 1.00194 1.22730 0.95616 0.98246 1.00068 1.21623 0.88801 0.96180 0.92460 1.88045 1.44304 1.35023 1.60413 1.22229 0.93306 0.89152 0.98990 1.20169 0.82485 0.84108 0.83673 1.90730 1.72396 1.26938 1.49888 1.45960 1.31798 1.17114 1.42778 1.21412 0.87915 0.98438 0.91146 1.22681 0.96185 0.95930 0.98448 0.90117 1.21588 0.88902 0.94317 0.93667 1.44470 1.33709 1.51475 1.03647 1.19044 1.08044 1.18478 0.90120 0.90512 1.24812 0.99139 1.00472 0.96116 1.69963 1.32920 1.44495 1.09486 0.86118 0.79878 0.80346 0.79404 1.21635 1.21676 1.20734 1.21221 0.93488 0.95804 0.83587 1.22443 0.96579 1.00652 0.93389 0.91405 1.21692 0.99823 1.00790 0.96873 0.87723 0.88419 0.86383 0.92550 0.92011 0.90218 0.90067 0.76396 0.91548 0.91300 0.96317 0.94640 0.93750 0.93295 0.94034 0.93638 0.92750 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 14.31 29.02 0.42 -0.79 16 2 C -0.15 -1.23 9.89 -36.02 -0.36 -1.59 16 3 C 0.09 0.72 6.35 36.01 0.23 0.95 16 4 O -0.36 -4.37 9.86 -55.14 -0.54 -4.91 16 5 C 0.04 0.43 6.42 36.01 0.23 0.66 16 6 C 0.51 6.96 7.91 -10.98 -0.09 6.87 16 7 O -0.52 -9.60 16.50 -14.36 -0.24 -9.84 16 8 N -0.72 -8.86 5.50 -60.30 -0.33 -9.19 16 9 C 0.13 1.92 5.13 -4.04 -0.02 1.90 16 10 C -0.11 -1.82 2.49 -88.47 -0.22 -2.04 16 11 H 0.08 1.27 8.05 -51.93 -0.42 0.86 16 12 C 0.14 2.78 6.65 -2.53 -0.02 2.76 16 13 N -0.61 -15.19 3.39 -170.07 -0.58 -15.77 16 14 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 15 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 16 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 17 N -0.92 -26.86 10.31 55.49 0.57 -26.29 16 18 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.18 4.36 4.97 -3.06 -0.02 4.34 16 23 C -0.11 -1.99 3.01 -88.78 -0.27 -2.25 16 24 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 25 C -0.13 -2.07 9.17 37.16 0.34 -1.73 16 26 H 0.10 0.57 8.06 -52.49 -0.42 0.15 16 27 H 0.10 0.54 7.90 -52.49 -0.41 0.12 16 28 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.06 0.38 7.86 -51.93 -0.41 -0.03 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.40 3.93 8.47 -40.82 -0.35 3.59 16 34 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 35 H 0.07 1.08 7.96 -51.93 -0.41 0.67 16 36 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.05 1.28 7.02 -51.93 -0.36 0.92 16 40 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 41 H 0.04 0.61 8.09 -51.93 -0.42 0.19 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -33.80 356.42 -8.13 -41.93 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.35 Total: -0.49 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -0.02 Total: 2.29 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.34 Total: -51.25 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.78 Total: -14.75 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.80 -8.13 -41.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101816906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.320 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds