Wall clock time and date at job start Tue Mar 31 2020 05:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50708 * 120.00224 * 2 1 4 4 O 1.42898 * 109.46832 * 134.99971 * 3 2 1 5 5 C 1.42900 * 113.99575 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47361 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99488 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00290 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 5 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 H 1.08999 * 110.88696 * 51.11497 * 10 9 8 12 12 C 1.54913 * 111.00482 * 287.19269 * 10 9 8 13 13 N 1.47418 * 104.83646 * 204.91582 * 12 10 9 14 14 C 1.36937 * 125.65451 * 204.08524 * 13 12 10 15 15 H 1.08002 * 119.99201 * 0.02562 * 14 13 12 16 16 C 1.38812 * 120.00689 * 180.02562 * 14 13 12 17 17 N 1.31622 * 119.99545 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00200 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47467 * 89.99541 * 18 16 14 20 20 H 1.48500 * 109.47092 * 209.99608 * 18 16 14 21 21 H 1.48499 * 109.47376 * 329.99565 * 18 16 14 22 22 C 1.47022 * 108.70212 * 24.12905 * 13 12 10 23 23 C 1.54323 * 107.27316 * 358.94056 * 22 13 12 24 24 H 1.08999 * 110.72315 * 96.16525 * 23 22 13 25 25 C 1.52996 * 110.87391 * 219.37425 * 23 22 13 26 26 H 1.07994 * 120.00221 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99846 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99846 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46755 * 14.99730 * 3 2 1 30 30 H 1.08994 * 109.46862 * 255.00255 * 3 2 1 31 31 H 1.08998 * 109.47421 * 59.99896 * 5 4 3 32 32 H 1.09002 * 109.47461 * 300.00159 * 5 4 3 33 33 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 35 35 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 36 36 H 1.08998 * 110.36634 * 323.75648 * 12 10 9 37 37 H 1.09003 * 110.36516 * 86.07315 * 12 10 9 38 38 H 0.96992 * 119.99683 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.88679 * 239.52692 * 22 13 12 40 40 H 1.08999 * 109.88236 * 118.35898 * 22 13 12 41 41 H 1.09006 * 109.47078 * 173.60681 * 25 23 22 42 42 H 1.08998 * 109.47155 * 293.60548 * 25 23 22 43 43 H 1.09004 * 109.47360 * 53.61303 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9077 2.4352 1.0328 6 6 4.9941 2.2567 2.0619 7 8 5.0897 1.2102 2.6674 8 7 5.8588 3.2604 2.3102 9 6 6.9186 3.0846 3.3062 10 6 7.7578 4.3612 3.3885 11 1 7.1220 5.2362 3.5234 12 6 8.6581 4.5155 2.1373 13 7 9.7853 5.3538 2.5844 14 6 10.5707 6.1322 1.7767 15 1 10.3846 6.1663 0.7134 16 6 11.6058 6.8775 2.3245 17 7 11.8321 6.8362 3.6205 18 14 12.6774 7.9387 1.2225 19 1 12.0869 9.2972 1.1173 20 1 14.0411 8.0353 1.8026 21 1 12.7564 7.3274 -0.1285 22 6 9.9274 5.2148 4.0412 23 6 8.8135 4.2608 4.5213 24 1 9.1897 3.2415 4.6084 25 6 8.2261 4.7346 5.8522 26 1 -0.5400 -0.9352 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3855 2.1161 0.2659 30 1 2.4755 1.4868 -0.9926 31 1 3.2678 3.2694 1.3205 32 1 4.3580 2.6408 0.0617 33 1 5.7820 4.0975 1.8261 34 1 6.4722 2.8798 4.2794 35 1 7.5555 2.2492 3.0156 36 1 9.0178 3.5413 1.8063 37 1 8.1112 5.0114 1.3354 38 1 12.5551 7.3572 4.0033 39 1 9.8137 6.1877 4.5193 40 1 10.9042 4.7940 4.2799 41 1 7.3694 4.1130 6.1130 42 1 8.9833 4.6555 6.6322 43 1 7.9068 5.7727 5.7594 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101816906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:25 Heat of formation + Delta-G solvation = -64.882327 kcal Electronic energy + Delta-G solvation = -21840.995906 eV Core-core repulsion = 18500.515187 eV Total energy + Delta-G solvation = -3340.480718 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.91598 -39.65698 -38.65195 -36.03549 -34.75257 -34.66164 -32.53753 -31.27684 -29.19841 -27.76548 -26.76536 -26.05022 -24.31439 -21.98095 -21.60105 -20.99460 -20.58139 -18.87788 -18.19760 -17.93773 -17.38900 -16.93658 -16.60780 -16.12799 -16.08495 -15.58895 -15.38480 -14.89760 -14.63712 -14.38224 -14.13568 -14.01794 -13.43690 -13.34265 -13.16247 -13.09859 -13.02548 -12.82328 -12.68314 -12.40094 -11.94131 -11.87408 -11.82730 -11.55845 -11.40106 -11.35756 -10.97026 -10.80128 -10.69077 -10.24564 -10.08429 -8.88386 -7.83677 -5.19264 1.21162 1.46290 1.48170 1.56696 1.59534 1.93829 2.50124 3.10792 3.34258 3.62089 3.69697 3.86058 3.95370 3.96716 4.09326 4.19259 4.27522 4.31781 4.38682 4.48701 4.51096 4.61326 4.62854 4.75038 4.82816 4.86839 4.98323 4.99865 5.09894 5.16664 5.34914 5.38693 5.48464 5.49590 5.67497 5.71360 5.72644 5.82799 6.10802 6.21470 6.57700 7.11561 7.24203 7.79480 8.44052 9.26583 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027107 B = 0.002847 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.699840 B = 9832.582908 C =10669.599511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.178 4.178 3 C 0.083 3.917 4 O -0.397 6.397 5 C 0.046 3.954 6 C 0.508 3.492 7 O -0.578 6.578 8 N -0.712 5.712 9 C 0.145 3.855 10 C -0.089 4.089 11 H 0.093 0.907 12 C 0.137 3.863 13 N -0.630 5.630 14 C -0.240 4.240 15 H 0.084 0.916 16 C -0.070 4.070 17 N -0.952 5.952 18 Si 0.979 3.021 19 H -0.284 1.284 20 H -0.297 1.297 21 H -0.269 1.269 22 C 0.192 3.808 23 C -0.103 4.103 24 H 0.072 0.928 25 C -0.127 4.127 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.417 0.583 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.016 0.984 37 H 0.053 0.947 38 H 0.246 0.754 39 H 0.017 0.983 40 H -0.002 1.002 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.318 -6.884 -5.644 23.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C 0.008 3.992 4 O -0.317 6.317 5 C -0.033 4.033 6 C 0.295 3.705 7 O -0.458 6.458 8 N -0.366 5.366 9 C 0.021 3.979 10 C -0.108 4.108 11 H 0.112 0.888 12 C 0.012 3.988 13 N -0.356 5.356 14 C -0.369 4.369 15 H 0.102 0.898 16 C -0.263 4.263 17 N -0.601 5.601 18 Si 0.807 3.193 19 H -0.211 1.211 20 H -0.224 1.224 21 H -0.194 1.194 22 C 0.067 3.933 23 C -0.123 4.123 24 H 0.090 0.910 25 C -0.185 4.185 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.123 0.877 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.254 0.746 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.033 0.967 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.035 0.965 40 H 0.016 0.984 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.042 -7.659 -5.104 22.967 hybrid contribution 1.265 1.091 -0.640 1.789 sum -19.777 -6.568 -5.744 21.616 Atomic orbital electron populations 1.24054 0.94978 1.03515 0.97819 1.22801 0.96367 0.98106 1.02341 1.21801 0.88332 0.96642 0.92460 1.87997 1.45525 1.36418 1.61743 1.22340 0.92643 0.89453 0.98858 1.20909 0.82858 0.83136 0.83605 1.90708 1.73896 1.29062 1.52099 1.45814 1.30860 1.17698 1.42188 1.21134 0.88046 0.96532 0.92159 1.22467 0.95406 0.97442 0.95511 0.88849 1.21781 0.88080 0.93252 0.95713 1.44810 1.34939 1.51750 1.04109 1.19470 1.08264 1.18269 0.90900 0.89792 1.25677 1.00826 1.02290 0.97478 1.70196 1.33317 1.45430 1.11138 0.85073 0.77499 0.78687 0.78042 1.21074 1.22423 1.19396 1.20972 0.93691 0.95242 0.83394 1.22323 0.95315 0.99267 0.95368 0.91005 1.21636 1.00693 1.01024 0.95113 0.86794 0.86916 0.87724 0.90673 0.90637 0.86900 0.87325 0.74620 0.90875 0.92688 0.96658 0.92916 0.94513 0.96463 0.98403 0.90638 0.92847 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 14.31 67.78 0.97 -0.91 16 2 C -0.18 -2.75 9.89 25.65 0.25 -2.50 16 3 C 0.08 1.21 6.35 71.24 0.45 1.66 16 4 O -0.40 -8.98 9.86 -129.94 -1.28 -10.26 16 5 C 0.05 0.77 6.42 71.24 0.46 1.23 16 6 C 0.51 12.81 7.91 87.66 0.69 13.50 16 7 O -0.58 -20.83 16.50 16.00 0.26 -20.56 16 8 N -0.71 -15.53 5.50 -463.07 -2.55 -18.08 16 9 C 0.15 3.86 5.13 86.38 0.44 4.31 16 10 C -0.09 -2.70 2.49 -9.40 -0.02 -2.72 16 11 H 0.09 2.67 8.05 -2.39 -0.02 2.65 16 12 C 0.14 5.20 6.65 86.86 0.58 5.78 16 13 N -0.63 -31.81 3.39 -691.99 -2.35 -34.16 16 14 C -0.24 -13.29 10.28 84.03 0.86 -12.42 16 15 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 16 C -0.07 -3.97 5.49 84.86 0.47 -3.51 16 17 N -0.95 -57.43 10.31 21.65 0.22 -57.21 16 18 Si 0.98 45.54 29.55 68.60 2.03 47.57 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 20 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 22 C 0.19 9.40 4.97 86.73 0.43 9.83 16 23 C -0.10 -3.63 3.01 -9.60 -0.03 -3.66 16 24 H 0.07 2.49 8.04 -2.39 -0.02 2.47 16 25 C -0.13 -3.73 9.17 71.98 0.66 -3.07 16 26 H 0.11 1.02 8.06 -2.91 -0.02 1.00 16 27 H 0.11 0.91 7.90 -2.91 -0.02 0.89 16 28 H 0.10 1.82 8.06 -2.91 -0.02 1.80 16 29 H 0.08 0.78 7.86 -2.39 -0.02 0.76 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.42 6.67 8.47 -92.71 -0.79 5.88 16 34 H 0.07 1.92 8.09 -2.38 -0.02 1.90 16 35 H 0.05 1.65 7.96 -2.39 -0.02 1.63 16 36 H 0.02 0.61 7.91 -2.39 -0.02 0.59 16 37 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 39 H 0.02 0.94 7.02 -2.39 -0.02 0.92 16 40 H 0.00 -0.13 7.51 -2.39 -0.02 -0.15 16 41 H 0.07 1.79 8.09 -2.38 -0.02 1.77 16 42 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.05 1.53 8.07 -2.38 -0.02 1.51 16 Total: -1.00 -76.43 356.42 2.74 -73.69 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.19 Total: 11.50 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 6.22 Total: 7.51 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -4.67 Total: -109.45 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -1.02 Total: -30.82 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -76.43 2.74 -73.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101816906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.807 kcal (2) G-P(sol) polarization free energy of solvation -76.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds