Wall clock time and date at job start Tue Mar 31 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00284 * 2 1 4 4 C 1.52998 * 109.47482 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46941 * 305.00621 * 4 3 2 6 6 C 1.53000 * 109.46734 * 64.99760 * 4 3 2 7 7 C 1.50699 * 109.47346 * 185.00145 * 4 3 2 8 8 O 1.21282 * 120.00005 * 359.97438 * 7 4 3 9 9 N 1.34780 * 119.99921 * 180.02562 * 7 4 3 10 10 C 1.46499 * 119.99985 * 179.97438 * 9 7 4 11 11 H 1.09002 * 110.68041 * 36.53231 * 10 9 7 12 12 C 1.54853 * 110.62704 * 273.54625 * 10 9 7 13 13 C 1.55847 * 103.44204 * 241.50844 * 12 10 9 14 14 H 1.09003 * 115.55501 * 158.81258 * 13 12 10 15 15 C 1.55837 * 105.06457 * 287.42301 * 13 12 10 16 16 C 1.56687 * 102.60192 * 72.30522 * 15 13 12 17 17 C 1.55840 * 110.62389 * 159.51611 * 10 9 7 18 18 H 1.08997 * 116.13297 * 319.34177 * 17 10 9 19 19 N 1.50239 * 101.05204 * 32.93944 * 13 12 10 20 20 C 1.36935 * 130.83819 * 126.00439 * 19 13 12 21 21 H 1.07996 * 119.99744 * 180.02562 * 20 19 13 22 22 C 1.38816 * 120.00006 * 0.03353 * 20 19 13 23 23 N 1.31613 * 119.99947 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99924 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46970 * 59.99417 * 24 22 20 26 26 H 1.48496 * 109.47104 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46898 * 299.99838 * 24 22 20 28 28 H 1.09001 * 109.47093 * 59.99529 * 1 2 3 29 29 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47133 * 300.00214 * 1 2 3 31 31 H 1.09003 * 109.46947 * 59.99476 * 3 2 1 32 32 H 1.08995 * 109.47086 * 300.00551 * 3 2 1 33 33 H 1.09002 * 109.47158 * 179.97438 * 6 4 3 34 34 H 1.09002 * 109.47536 * 300.00161 * 6 4 3 35 35 H 1.08997 * 109.47170 * 60.00485 * 6 4 3 36 36 H 0.96996 * 119.99773 * 359.97438 * 9 7 4 37 37 H 1.08997 * 110.62754 * 123.02138 * 12 10 9 38 38 H 1.08991 * 110.62474 * 359.97438 * 12 10 9 39 39 H 1.09002 * 110.62880 * 190.31987 * 15 13 12 40 40 H 1.09003 * 110.62640 * 313.33458 * 15 13 12 41 41 H 1.08997 * 110.35327 * 241.22021 * 16 15 13 42 42 H 1.09000 * 110.88830 * 118.35902 * 16 15 13 43 43 H 0.97000 * 119.99821 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5684 0.8426 6 6 3.9962 0.5363 -1.3064 7 6 4.1480 2.5559 0.1245 8 8 3.4348 3.5337 0.2039 9 7 5.4883 2.6959 0.1460 10 6 6.0838 4.0290 0.2658 11 1 5.4874 4.6591 0.9257 12 6 6.2336 4.6869 -1.1280 13 6 7.7718 4.8962 -1.2663 14 1 8.1412 5.0089 -2.2856 15 6 8.1102 6.0669 -0.2951 16 6 7.9635 5.3961 1.1133 17 6 7.5517 3.9304 0.7798 18 1 7.7367 3.1994 1.5668 19 7 8.2934 3.7088 -0.5078 20 6 9.1734 2.7267 -0.8768 21 1 9.4297 1.9420 -0.1805 22 6 9.7361 2.7398 -2.1457 23 7 9.4233 3.6959 -2.9944 24 14 10.9371 1.4004 -2.6488 25 1 10.2663 0.0780 -2.5673 26 1 11.3904 1.6400 -4.0424 27 1 12.1088 1.4181 -1.7366 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 5.0829 0.4507 -1.3062 34 1 3.5532 -0.4556 -1.3960 35 1 3.6809 1.1525 -2.1484 36 1 6.0586 1.9139 0.0821 37 1 5.7116 5.6432 -1.1594 38 1 5.8654 4.0211 -1.9084 39 1 9.1323 6.4122 -0.4512 40 1 7.4034 6.8871 -0.4214 41 1 7.1831 5.8923 1.6901 42 1 8.9099 5.4155 1.6535 43 1 9.8162 3.7049 -3.8812 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110379999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:13 Heat of formation + Delta-G solvation = -47.115807 kcal Electronic energy + Delta-G solvation = -23326.537247 eV Core-core repulsion = 19986.826943 eV Total energy + Delta-G solvation = -3339.710304 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.96215 -38.69497 -37.64624 -33.90357 -33.38693 -32.45658 -29.11145 -28.78495 -27.86521 -27.23521 -25.74974 -24.25030 -23.11967 -21.04525 -19.83628 -19.38806 -18.66146 -17.25495 -16.99231 -16.18882 -15.86736 -15.62389 -14.98140 -14.77775 -14.69129 -14.02339 -13.82197 -13.41719 -13.24904 -12.80268 -12.53075 -12.10638 -12.02638 -11.83376 -11.59918 -11.36219 -11.17030 -11.10607 -10.95614 -10.89637 -10.84566 -10.50540 -10.39442 -10.13011 -9.90434 -9.74945 -9.62277 -9.24320 -9.12471 -8.97008 -8.44469 -6.96471 -5.75563 -3.15013 2.96385 3.29302 3.35640 3.40369 3.41816 4.05448 4.39535 4.77017 4.93832 5.08273 5.12460 5.20263 5.21248 5.34138 5.43522 5.49700 5.61289 5.62284 5.68239 5.70218 5.87107 5.91310 6.00238 6.05185 6.11033 6.14458 6.28412 6.31697 6.42306 6.49080 6.59517 6.74344 6.82366 6.94534 7.03933 7.12413 7.32645 7.45338 7.77817 7.99818 8.16078 8.61457 9.05740 9.69160 10.50307 11.33165 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.004952 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.471634 B = 5652.809741 C = 6743.711528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.082 3.918 4 C -0.109 4.109 5 H 0.102 0.898 6 C -0.140 4.140 7 C 0.517 3.483 8 O -0.556 6.556 9 N -0.701 5.701 10 C 0.129 3.871 11 H 0.077 0.923 12 C -0.141 4.141 13 C 0.153 3.847 14 H 0.152 0.848 15 C -0.139 4.139 16 C -0.128 4.128 17 C 0.125 3.875 18 H 0.088 0.912 19 N -0.590 5.590 20 C -0.216 4.216 21 H 0.078 0.922 22 C -0.009 4.009 23 N -0.919 5.919 24 Si 0.915 3.085 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.286 1.286 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.403 0.597 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.548 -3.535 5.870 13.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.005 3.995 4 C -0.131 4.131 5 H 0.120 0.880 6 C -0.198 4.198 7 C 0.303 3.697 8 O -0.435 6.435 9 N -0.350 5.350 10 C 0.023 3.977 11 H 0.095 0.905 12 C -0.182 4.182 13 C 0.046 3.954 14 H 0.169 0.831 15 C -0.179 4.179 16 C -0.168 4.168 17 C 0.016 3.984 18 H 0.106 0.894 19 N -0.311 5.311 20 C -0.344 4.344 21 H 0.095 0.905 22 C -0.205 4.205 23 N -0.567 5.567 24 Si 0.745 3.255 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.213 1.213 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.238 0.762 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.696 -3.156 5.697 13.387 hybrid contribution 0.679 -0.778 -0.250 1.062 sum -11.017 -3.934 5.447 12.905 Atomic orbital electron populations 1.22706 0.81039 1.02472 1.00064 1.87804 1.19629 1.28243 1.95524 1.22224 0.91890 0.83840 1.01521 1.21168 0.94889 0.95301 1.01726 0.88026 1.21723 1.01923 1.01146 0.94998 1.20272 0.82870 0.90304 0.76259 1.90656 1.61187 1.40728 1.50955 1.45980 1.05778 1.10708 1.72533 1.22624 0.94633 0.82427 0.97998 0.90513 1.23446 1.00282 0.98787 0.95675 1.23720 0.88498 0.84262 0.98912 0.83131 1.23368 1.00178 0.98259 0.96049 1.23184 0.99777 0.96597 0.97239 1.23156 0.89569 0.95096 0.90547 0.89406 1.46505 1.48702 1.27035 1.08812 1.18948 1.16476 1.01743 0.97204 0.90459 1.24694 1.00664 0.98734 0.96367 1.69455 1.46876 1.33433 1.06905 0.86153 0.80816 0.80992 0.77501 1.21248 1.21619 1.21297 0.94079 0.89742 0.94140 0.92462 0.92537 0.91514 0.91026 0.92278 0.76197 0.92911 0.92271 0.92630 0.93141 0.93091 0.92431 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -4.87 10.24 -35.23 -0.36 -5.23 16 3 C 0.08 1.08 4.67 37.16 0.17 1.25 16 4 C -0.11 -1.48 2.96 -91.77 -0.27 -1.75 16 5 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 6 C -0.14 -1.83 8.99 37.16 0.33 -1.49 16 7 C 0.52 8.62 7.15 -10.98 -0.08 8.54 16 8 O -0.56 -10.90 15.64 5.56 0.09 -10.81 16 9 N -0.70 -11.94 4.99 -51.40 -0.26 -12.20 16 10 C 0.13 2.40 2.73 -65.44 -0.18 2.22 16 11 H 0.08 1.43 7.37 -51.93 -0.38 1.05 16 12 C -0.14 -2.90 6.22 -24.23 -0.15 -3.05 16 13 C 0.15 3.45 4.67 -62.80 -0.29 3.16 16 14 H 0.15 3.92 5.52 -51.93 -0.29 3.63 16 15 C -0.14 -2.74 6.58 -23.23 -0.15 -2.89 16 16 C -0.13 -2.30 6.49 -23.22 -0.15 -2.46 16 17 C 0.12 2.40 5.04 -62.80 -0.32 2.08 16 18 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 19 N -0.59 -13.77 2.99 -145.81 -0.44 -14.21 16 20 C -0.22 -5.56 10.59 -15.06 -0.16 -5.72 16 21 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 23 N -0.92 -25.51 10.46 55.49 0.58 -24.93 16 24 Si 0.91 21.18 29.55 -169.99 -5.02 16.15 16 25 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.76 7.96 -51.93 -0.41 0.35 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.89 7.56 -51.93 -0.39 0.50 16 34 H 0.07 0.86 7.82 -51.93 -0.41 0.45 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.40 6.62 8.04 -40.82 -0.33 6.30 16 37 H 0.05 1.02 7.80 -51.93 -0.40 0.61 16 38 H 0.06 1.31 7.98 -51.93 -0.41 0.90 16 39 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.05 0.89 7.80 -51.93 -0.41 0.48 16 41 H 0.05 0.81 7.82 -51.93 -0.41 0.40 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.25 6.94 8.31 -40.82 -0.34 6.61 16 LS Contribution 342.87 15.07 5.17 5.17 Total: -1.00 -29.35 342.87 -7.66 -37.01 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -7.19 Total: 8.05 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -0.23 Total: 1.00 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.11 Total: -51.34 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.27 Total: -16.04 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.35 -7.66 -37.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110379999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.107 kcal (2) G-P(sol) polarization free energy of solvation -29.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds