Wall clock time and date at job start Tue Mar 31 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00284 * 2 1 4 4 C 1.52998 * 109.47482 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46941 * 305.00621 * 4 3 2 6 6 C 1.53000 * 109.46734 * 64.99760 * 4 3 2 7 7 C 1.50699 * 109.47346 * 185.00145 * 4 3 2 8 8 O 1.21282 * 120.00005 * 359.97438 * 7 4 3 9 9 N 1.34780 * 119.99921 * 180.02562 * 7 4 3 10 10 C 1.46499 * 119.99985 * 179.97438 * 9 7 4 11 11 H 1.09002 * 110.68041 * 36.53231 * 10 9 7 12 12 C 1.54853 * 110.62704 * 273.54625 * 10 9 7 13 13 C 1.55847 * 103.44204 * 241.50844 * 12 10 9 14 14 H 1.09003 * 115.55501 * 158.81258 * 13 12 10 15 15 C 1.55837 * 105.06457 * 287.42301 * 13 12 10 16 16 C 1.56687 * 102.60192 * 72.30522 * 15 13 12 17 17 C 1.55840 * 110.62389 * 159.51611 * 10 9 7 18 18 H 1.08997 * 116.13297 * 319.34177 * 17 10 9 19 19 N 1.50239 * 101.05204 * 32.93944 * 13 12 10 20 20 C 1.36935 * 130.83819 * 126.00439 * 19 13 12 21 21 H 1.07996 * 119.99744 * 180.02562 * 20 19 13 22 22 C 1.38816 * 120.00006 * 0.03353 * 20 19 13 23 23 N 1.31613 * 119.99947 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99924 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46970 * 59.99417 * 24 22 20 26 26 H 1.48496 * 109.47104 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46898 * 299.99838 * 24 22 20 28 28 H 1.09001 * 109.47093 * 59.99529 * 1 2 3 29 29 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47133 * 300.00214 * 1 2 3 31 31 H 1.09003 * 109.46947 * 59.99476 * 3 2 1 32 32 H 1.08995 * 109.47086 * 300.00551 * 3 2 1 33 33 H 1.09002 * 109.47158 * 179.97438 * 6 4 3 34 34 H 1.09002 * 109.47536 * 300.00161 * 6 4 3 35 35 H 1.08997 * 109.47170 * 60.00485 * 6 4 3 36 36 H 0.96996 * 119.99773 * 359.97438 * 9 7 4 37 37 H 1.08997 * 110.62754 * 123.02138 * 12 10 9 38 38 H 1.08991 * 110.62474 * 359.97438 * 12 10 9 39 39 H 1.09002 * 110.62880 * 190.31987 * 15 13 12 40 40 H 1.09003 * 110.62640 * 313.33458 * 15 13 12 41 41 H 1.08997 * 110.35327 * 241.22021 * 16 15 13 42 42 H 1.09000 * 110.88830 * 118.35902 * 16 15 13 43 43 H 0.97000 * 119.99821 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5684 0.8426 6 6 3.9962 0.5363 -1.3064 7 6 4.1480 2.5559 0.1245 8 8 3.4348 3.5337 0.2039 9 7 5.4883 2.6959 0.1460 10 6 6.0838 4.0290 0.2658 11 1 5.4874 4.6591 0.9257 12 6 6.2336 4.6869 -1.1280 13 6 7.7718 4.8962 -1.2663 14 1 8.1412 5.0089 -2.2856 15 6 8.1102 6.0669 -0.2951 16 6 7.9635 5.3961 1.1133 17 6 7.5517 3.9304 0.7798 18 1 7.7367 3.1994 1.5668 19 7 8.2934 3.7088 -0.5078 20 6 9.1734 2.7267 -0.8768 21 1 9.4297 1.9420 -0.1805 22 6 9.7361 2.7398 -2.1457 23 7 9.4233 3.6959 -2.9944 24 14 10.9371 1.4004 -2.6488 25 1 10.2663 0.0780 -2.5673 26 1 11.3904 1.6400 -4.0424 27 1 12.1088 1.4181 -1.7366 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 5.0829 0.4507 -1.3062 34 1 3.5532 -0.4556 -1.3960 35 1 3.6809 1.1525 -2.1484 36 1 6.0586 1.9139 0.0821 37 1 5.7116 5.6432 -1.1594 38 1 5.8654 4.0211 -1.9084 39 1 9.1323 6.4122 -0.4512 40 1 7.4034 6.8871 -0.4214 41 1 7.1831 5.8923 1.6901 42 1 8.9099 5.4155 1.6535 43 1 9.8162 3.7049 -3.8812 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110379999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:12 Heat of formation + Delta-G solvation = -65.554984 kcal Electronic energy + Delta-G solvation = -23327.336830 eV Core-core repulsion = 19986.826943 eV Total energy + Delta-G solvation = -3340.509887 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.39789 -40.13459 -38.68868 -35.34574 -34.71080 -34.17662 -30.94408 -30.34877 -29.34623 -28.21084 -26.69000 -26.10465 -24.39042 -22.46809 -21.51375 -20.79212 -20.24168 -18.82328 -18.39774 -17.43213 -16.99168 -16.76516 -16.70650 -16.01021 -15.95310 -15.69445 -15.27167 -14.84261 -14.49606 -14.18393 -13.72008 -13.63111 -13.47208 -13.18528 -12.88892 -12.83444 -12.76903 -12.64127 -12.43282 -12.30379 -12.08478 -11.98820 -11.90350 -11.86905 -11.66279 -11.17163 -10.94162 -10.89092 -10.66106 -10.59436 -9.92763 -8.85285 -7.73271 -5.13290 1.51284 1.52534 1.58420 1.63405 2.11804 2.52438 2.99074 3.39723 3.47470 3.64471 3.86912 3.98011 4.05040 4.09204 4.29205 4.33546 4.45851 4.47631 4.49514 4.51547 4.62398 4.63805 4.67686 4.73004 4.84603 4.85154 4.87255 4.91941 4.97135 5.09380 5.18657 5.19337 5.25857 5.39535 5.53677 5.61685 5.73113 5.91147 6.15368 6.29196 6.63836 7.07942 7.26670 7.75179 8.60889 9.33698 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.004952 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.471634 B = 5652.809741 C = 6743.711528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.088 3.912 4 C -0.102 4.102 5 H 0.122 0.878 6 C -0.134 4.134 7 C 0.518 3.482 8 O -0.585 6.585 9 N -0.700 5.700 10 C 0.140 3.860 11 H 0.086 0.914 12 C -0.132 4.132 13 C 0.138 3.862 14 H 0.114 0.886 15 C -0.133 4.133 16 C -0.119 4.119 17 C 0.127 3.873 18 H 0.105 0.895 19 N -0.609 5.609 20 C -0.214 4.214 21 H 0.086 0.914 22 C -0.066 4.066 23 N -0.948 5.948 24 Si 0.973 3.027 25 H -0.278 1.278 26 H -0.302 1.302 27 H -0.282 1.282 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.407 0.593 37 H 0.063 0.937 38 H 0.032 0.968 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.451 -4.496 7.704 15.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C 0.011 3.989 4 C -0.123 4.123 5 H 0.140 0.860 6 C -0.192 4.192 7 C 0.305 3.695 8 O -0.466 6.466 9 N -0.349 5.349 10 C 0.033 3.967 11 H 0.104 0.896 12 C -0.172 4.172 13 C 0.032 3.968 14 H 0.131 0.869 15 C -0.172 4.172 16 C -0.159 4.159 17 C 0.020 3.980 18 H 0.123 0.877 19 N -0.330 5.330 20 C -0.343 4.343 21 H 0.104 0.896 22 C -0.258 4.258 23 N -0.598 5.598 24 Si 0.802 3.198 25 H -0.204 1.204 26 H -0.229 1.229 27 H -0.209 1.209 28 H 0.064 0.936 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.242 0.758 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -12.616 -4.132 7.568 15.281 hybrid contribution 0.883 -0.468 -0.804 1.282 sum -11.733 -4.600 6.764 14.303 Atomic orbital electron populations 1.22944 0.79316 1.04048 1.00732 1.87775 1.21513 1.27508 1.95591 1.22078 0.91560 0.84297 1.00962 1.21137 0.95132 0.93422 1.02629 0.86006 1.21672 1.01638 1.01577 0.94288 1.20778 0.82402 0.91232 0.75067 1.90641 1.61709 1.42061 1.52224 1.45951 1.06154 1.10270 1.72510 1.22437 0.94486 0.83221 0.96522 0.89649 1.23303 0.98690 0.98986 0.96243 1.23552 0.89693 0.85630 0.97948 0.86915 1.23274 0.99688 0.97837 0.96415 1.23138 1.00982 0.95517 0.96256 1.23370 0.89032 0.96323 0.89291 0.87704 1.46688 1.48813 1.26841 1.10700 1.19317 1.15842 1.02050 0.97108 0.89597 1.25407 1.02807 1.00775 0.96851 1.69718 1.48196 1.35134 1.06725 0.85227 0.79088 0.79131 0.76307 1.20388 1.22889 1.20893 0.93605 0.87764 0.93308 0.92722 0.93480 0.91957 0.89602 0.93504 0.75757 0.91826 0.94898 0.94362 0.90994 0.90072 0.92137 0.94598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.40 -9.20 10.24 -148.98 -1.53 -10.73 16 3 C 0.09 2.18 4.67 71.98 0.34 2.52 16 4 C -0.10 -2.58 2.96 -11.54 -0.03 -2.61 16 5 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 6 C -0.13 -3.32 8.99 71.98 0.65 -2.68 16 7 C 0.52 16.55 7.15 87.66 0.63 17.18 16 8 O -0.59 -22.26 15.64 -3.03 -0.05 -22.31 16 9 N -0.70 -22.82 4.99 -434.92 -2.17 -24.99 16 10 C 0.14 4.95 2.73 46.61 0.13 5.08 16 11 H 0.09 2.94 7.37 -2.39 -0.02 2.92 16 12 C -0.13 -5.35 6.22 32.21 0.20 -5.15 16 13 C 0.14 6.31 4.67 46.23 0.22 6.52 16 14 H 0.11 6.12 5.52 -2.39 -0.01 6.10 16 15 C -0.13 -5.08 6.58 32.86 0.22 -4.87 16 16 C -0.12 -3.97 6.49 32.87 0.21 -3.76 16 17 C 0.13 4.60 5.04 46.23 0.23 4.83 16 18 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 19 N -0.61 -28.14 2.99 -615.24 -1.84 -29.98 16 20 C -0.21 -10.96 10.59 84.03 0.89 -10.07 16 21 H 0.09 4.14 7.83 -2.91 -0.02 4.11 16 22 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16 23 N -0.95 -54.31 10.46 21.65 0.23 -54.09 16 24 Si 0.97 43.93 29.55 68.60 2.03 45.96 16 25 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 26 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 27 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.05 1.37 7.96 -2.39 -0.02 1.36 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.59 7.56 -2.39 -0.02 1.57 16 34 H 0.09 1.89 7.82 -2.39 -0.02 1.87 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.41 12.75 8.04 -92.71 -0.75 12.01 16 37 H 0.06 2.40 7.80 -2.39 -0.02 2.38 16 38 H 0.03 1.48 7.98 -2.39 -0.02 1.46 16 39 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.07 2.41 7.80 -2.39 -0.02 2.39 16 41 H 0.08 2.25 7.82 -2.39 -0.02 2.23 16 42 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.24 13.89 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -63.19 342.87 2.30 -60.89 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.25 Total: 29.67 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 5.39 Total: 5.59 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -3.79 Total: -109.06 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -1.57 Total: -33.04 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -63.19 2.30 -60.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110379999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.668 kcal (2) G-P(sol) polarization free energy of solvation -63.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds