Wall clock time and date at job start Tue Mar 31 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46948 * 55.00400 * 4 3 2 6 6 C 1.53001 * 109.47553 * 294.99784 * 4 3 2 7 7 C 1.50701 * 109.47164 * 174.99886 * 4 3 2 8 8 O 1.21282 * 119.99870 * 359.97438 * 7 4 3 9 9 N 1.34771 * 120.00355 * 180.02562 * 7 4 3 10 10 C 1.46501 * 120.00225 * 179.97438 * 9 7 4 11 11 H 1.08999 * 110.55554 * 36.45291 * 10 9 7 12 12 C 1.54843 * 110.62854 * 273.54792 * 10 9 7 13 13 C 1.55849 * 103.44573 * 241.51022 * 12 10 9 14 14 H 1.08998 * 115.56218 * 158.81522 * 13 12 10 15 15 C 1.55845 * 105.06444 * 287.42251 * 13 12 10 16 16 C 1.56689 * 102.59816 * 72.30007 * 15 13 12 17 17 C 1.55843 * 103.59613 * 359.66784 * 16 15 13 18 18 H 1.09007 * 116.12573 * 159.38263 * 17 16 15 19 19 N 1.50232 * 101.05159 * 32.93983 * 13 12 10 20 20 C 1.36935 * 130.84065 * 126.00978 * 19 13 12 21 21 H 1.08001 * 120.00053 * 180.02562 * 20 19 13 22 22 C 1.38809 * 119.99928 * 0.02742 * 20 19 13 23 23 N 1.31621 * 120.00284 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00066 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47156 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47313 * 120.00009 * 24 22 20 27 27 H 1.48509 * 109.47230 * 239.99833 * 24 22 20 28 28 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 29 29 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 30 30 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 32 32 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 33 33 H 1.08999 * 109.47385 * 179.97438 * 6 4 3 34 34 H 1.08997 * 109.46949 * 300.00734 * 6 4 3 35 35 H 1.09006 * 109.46667 * 59.99667 * 6 4 3 36 36 H 0.97006 * 120.00184 * 0.02562 * 9 7 4 37 37 H 1.08999 * 110.63196 * 0.02562 * 12 10 9 38 38 H 1.09001 * 110.62657 * 123.02357 * 12 10 9 39 39 H 1.08998 * 110.63150 * 190.31366 * 15 13 12 40 40 H 1.09002 * 110.62621 * 313.33947 * 15 13 12 41 41 H 1.08995 * 110.35783 * 241.22210 * 16 15 13 42 42 H 1.08997 * 110.88102 * 118.36325 * 16 15 13 43 43 H 0.96998 * 120.00236 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8514 0.5683 -0.8410 6 6 3.9953 0.5370 1.3083 7 6 4.1480 2.5560 -0.1232 8 8 3.4349 3.5336 -0.2045 9 7 5.4883 2.6959 -0.1447 10 6 6.0838 4.0290 -0.2657 11 1 5.4935 4.7630 0.2828 12 6 6.2137 4.4354 -1.7541 13 6 7.7495 4.6157 -1.9479 14 1 8.1048 4.5499 -2.9762 15 6 8.1000 5.9366 -1.1987 16 6 7.9733 5.5198 0.3064 17 6 7.5588 4.0191 0.2373 18 1 7.7461 3.4276 1.1337 19 7 8.2829 3.5770 -1.0026 20 6 9.1590 2.5447 -1.2080 21 1 9.4258 1.8921 -0.3899 22 6 9.7040 2.3373 -2.4676 23 7 9.3785 3.1324 -3.4647 24 14 10.8997 0.9296 -2.7476 25 1 11.0995 0.1895 -1.4759 26 1 10.3493 0.0096 -3.7751 27 1 12.2013 1.4711 -3.2145 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 5.0818 0.4505 1.3085 34 1 3.6792 1.1534 2.1498 35 1 3.5521 -0.4549 1.3979 36 1 6.0587 1.9139 -0.0808 37 1 5.8347 3.6454 -2.4025 38 1 5.6902 5.3725 -1.9434 39 1 9.1194 6.2483 -1.4262 40 1 7.3905 6.7233 -1.4552 41 1 7.2004 6.1093 0.7993 42 1 8.9271 5.6313 0.8220 43 1 9.7591 2.9872 -4.3450 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110380000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:15 Heat of formation + Delta-G solvation = -47.331119 kcal Electronic energy + Delta-G solvation = -23270.626631 eV Core-core repulsion = 19930.906990 eV Total energy + Delta-G solvation = -3339.719641 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.96743 -38.70172 -37.64816 -33.91577 -33.41017 -32.46019 -29.11531 -28.78405 -27.86552 -27.26559 -25.78279 -24.25524 -23.15103 -21.01203 -19.83922 -19.44545 -18.64925 -17.24059 -17.00834 -16.13532 -15.95759 -15.62353 -15.02250 -14.86597 -14.55735 -13.94955 -13.90916 -13.48699 -13.23030 -12.85375 -12.53682 -12.16918 -12.02927 -11.85767 -11.62324 -11.38726 -11.16452 -11.11757 -10.94649 -10.92889 -10.87319 -10.50627 -10.40605 -10.08848 -9.90676 -9.75202 -9.62726 -9.24726 -9.13275 -8.97900 -8.44629 -6.96581 -5.76089 -3.15531 2.96686 3.28588 3.35147 3.40359 3.43216 4.04939 4.39157 4.75106 4.91218 5.06419 5.12066 5.19371 5.20495 5.33792 5.42268 5.49275 5.58327 5.62385 5.64144 5.70443 5.81690 5.86846 5.95314 6.04426 6.10503 6.14206 6.18245 6.29809 6.41720 6.48771 6.59359 6.74144 6.82064 6.94217 7.03720 7.12238 7.32329 7.45814 7.77546 7.99537 8.15828 8.61196 9.05438 9.68835 10.49800 11.32791 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017433 B = 0.004838 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.802803 B = 5785.796524 C = 6739.346117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.082 3.918 4 C -0.112 4.112 5 H 0.105 0.895 6 C -0.138 4.138 7 C 0.518 3.482 8 O -0.556 6.556 9 N -0.701 5.701 10 C 0.129 3.871 11 H 0.077 0.923 12 C -0.142 4.142 13 C 0.152 3.848 14 H 0.152 0.848 15 C -0.139 4.139 16 C -0.127 4.127 17 C 0.125 3.875 18 H 0.088 0.912 19 N -0.590 5.590 20 C -0.214 4.214 21 H 0.079 0.921 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.914 3.086 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.291 1.291 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.403 0.597 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.482 -2.365 7.579 13.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.006 3.994 4 C -0.133 4.133 5 H 0.123 0.877 6 C -0.196 4.196 7 C 0.303 3.697 8 O -0.435 6.435 9 N -0.350 5.350 10 C 0.022 3.978 11 H 0.095 0.905 12 C -0.182 4.182 13 C 0.046 3.954 14 H 0.169 0.831 15 C -0.178 4.178 16 C -0.167 4.167 17 C 0.017 3.983 18 H 0.106 0.894 19 N -0.311 5.311 20 C -0.342 4.342 21 H 0.097 0.903 22 C -0.206 4.206 23 N -0.567 5.567 24 Si 0.745 3.255 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.238 0.762 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.635 -2.029 7.340 13.905 hybrid contribution 0.666 -0.811 -0.185 1.066 sum -10.969 -2.840 7.154 13.400 Atomic orbital electron populations 1.22707 0.81027 1.02486 1.00061 1.87808 1.19642 1.28223 1.95524 1.22217 0.91850 0.83860 1.01521 1.21182 0.94941 0.95434 1.01738 0.87737 1.21709 1.01561 1.01301 0.95035 1.20252 0.82868 0.90273 0.76263 1.90657 1.61175 1.40699 1.50993 1.45983 1.05788 1.10741 1.72492 1.22645 0.94720 0.82683 0.97717 0.90504 1.23452 1.00305 0.99643 0.94840 1.23720 0.88357 0.84963 0.98375 0.83130 1.23367 1.00206 0.99023 0.95245 1.23166 0.99806 0.96474 0.97270 1.23156 0.89605 0.94014 0.91536 0.89407 1.46524 1.49257 1.31553 1.03773 1.19043 1.16673 1.03627 0.94890 0.90331 1.24703 1.00742 0.99429 0.95685 1.69478 1.47099 1.39091 1.00983 0.86000 0.80506 0.81302 0.77655 1.20588 1.21819 1.21826 0.94141 0.94068 0.89734 0.92347 0.92638 0.91844 0.92416 0.90945 0.76206 0.92303 0.92887 0.92614 0.93126 0.93075 0.92417 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -4.88 10.24 -35.23 -0.36 -5.24 16 3 C 0.08 1.08 4.67 37.16 0.17 1.25 16 4 C -0.11 -1.50 2.96 -91.77 -0.27 -1.77 16 5 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 6 C -0.14 -1.58 8.99 37.16 0.33 -1.25 16 7 C 0.52 8.62 7.15 -10.99 -0.08 8.54 16 8 O -0.56 -10.89 15.64 5.56 0.09 -10.80 16 9 N -0.70 -11.94 4.99 -51.40 -0.26 -12.19 16 10 C 0.13 2.39 2.73 -65.44 -0.18 2.21 16 11 H 0.08 1.43 7.36 -51.93 -0.38 1.05 16 12 C -0.14 -2.92 6.22 -24.24 -0.15 -3.07 16 13 C 0.15 3.46 4.67 -62.80 -0.29 3.16 16 14 H 0.15 3.93 5.52 -51.93 -0.29 3.65 16 15 C -0.14 -2.73 6.58 -23.22 -0.15 -2.89 16 16 C -0.13 -2.29 6.49 -23.22 -0.15 -2.44 16 17 C 0.13 2.41 5.04 -62.80 -0.32 2.09 16 18 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 19 N -0.59 -13.82 2.99 -145.82 -0.44 -14.25 16 20 C -0.21 -5.53 10.59 -15.06 -0.16 -5.69 16 21 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 23 N -0.92 -25.60 10.47 55.49 0.58 -25.02 16 24 Si 0.91 21.25 29.55 -169.99 -5.02 16.22 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.81 7.95 -51.93 -0.41 0.40 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.69 7.57 -51.93 -0.39 0.30 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.78 7.82 -51.93 -0.41 0.37 16 36 H 0.40 6.62 8.04 -40.82 -0.33 6.29 16 37 H 0.06 1.31 7.98 -51.93 -0.41 0.90 16 38 H 0.05 1.02 7.80 -51.93 -0.40 0.62 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.05 0.89 7.80 -51.93 -0.41 0.49 16 41 H 0.05 0.81 7.82 -51.93 -0.41 0.40 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 342.87 15.07 5.17 5.17 Total: -1.00 -29.56 342.87 -7.66 -37.22 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.19 Total: 7.68 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -0.23 Total: 1.22 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.11 Total: -51.47 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.27 Total: -16.05 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.56 -7.66 -37.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110380000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.107 kcal (2) G-P(sol) polarization free energy of solvation -29.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds