Wall clock time and date at job start Tue Mar 31 2020 06:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47182 * 2 1 4 4 C 1.42902 * 114.00072 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.47182 * 179.97438 * 4 3 2 6 6 O 1.21275 * 119.99737 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00023 * 179.97438 * 5 4 3 8 8 C 1.46495 * 120.00085 * 180.02562 * 7 5 4 9 9 C 1.54321 * 112.36114 * 299.33770 * 8 7 5 10 10 C 1.55055 * 103.94234 * 262.39332 * 9 8 7 11 11 C 1.55057 * 102.10719 * 319.94280 * 10 9 8 12 12 C 1.54325 * 103.93678 * 40.05503 * 11 10 9 13 13 H 1.08996 * 111.68893 * 97.20228 * 12 11 10 14 14 C 1.53777 * 109.06510 * 221.16783 * 12 11 10 15 15 N 1.49316 * 105.33484 * 95.07756 * 14 12 11 16 16 C 1.36942 * 126.54476 * 211.25902 * 15 14 12 17 17 H 1.07998 * 119.99937 * 162.18803 * 16 15 14 18 18 C 1.38810 * 119.99713 * 342.19875 * 16 15 14 19 19 N 1.31621 * 119.99630 * 159.96585 * 18 16 15 20 20 Si 1.86795 * 119.99988 * 339.95767 * 18 16 15 21 21 H 1.48500 * 109.47267 * 84.71333 * 20 18 16 22 22 H 1.48507 * 109.47049 * 204.71363 * 20 18 16 23 23 H 1.48495 * 109.47473 * 324.71455 * 20 18 16 24 24 C 1.47218 * 106.75466 * 31.43278 * 15 14 12 25 25 H 1.08996 * 109.47238 * 300.00093 * 1 2 3 26 26 H 1.08995 * 109.46758 * 60.00112 * 1 2 3 27 27 H 1.08994 * 109.47063 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47238 * 239.99907 * 2 1 3 29 29 H 1.09004 * 109.47290 * 120.00094 * 2 1 3 30 30 H 1.09004 * 109.46835 * 59.99705 * 4 3 2 31 31 H 1.08999 * 109.47172 * 300.00016 * 4 3 2 32 32 H 0.97008 * 119.99988 * 0.02562 * 7 5 4 33 33 H 1.09002 * 110.53293 * 143.77627 * 9 8 7 34 34 H 1.09002 * 110.53485 * 21.00981 * 9 8 7 35 35 H 1.08994 * 110.90527 * 201.73990 * 10 9 8 36 36 H 1.08999 * 110.90159 * 78.13786 * 10 9 8 37 37 H 1.08995 * 110.53413 * 158.66915 * 11 10 9 38 38 H 1.09002 * 110.53189 * 281.44589 * 11 10 9 39 39 H 1.08996 * 110.07426 * 214.12187 * 14 12 11 40 40 H 1.09003 * 110.07131 * 335.66126 * 14 12 11 41 41 H 0.97007 * 119.99371 * 179.97438 * 19 18 16 42 42 H 1.09000 * 110.06851 * 209.29996 * 24 15 14 43 43 H 1.08994 * 110.11961 * 87.78511 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8195 2.9162 -0.0001 6 8 2.9611 3.7728 -0.0005 7 7 5.1210 3.2663 0.0008 8 6 5.4987 4.6817 0.0007 9 6 4.9755 5.4289 -1.2440 10 6 6.1891 5.4427 -2.2091 11 6 7.3702 5.7161 -1.2424 12 6 7.0366 4.8661 0.0018 13 1 7.5586 3.9094 -0.0122 14 6 7.3668 5.6759 1.2666 15 7 6.0812 6.3190 1.6706 16 6 5.9360 7.5263 2.3005 17 1 4.9800 8.0286 2.2911 18 6 7.0176 8.1044 2.9507 19 7 7.0173 9.3951 3.2084 20 14 8.4733 7.0505 3.4601 21 1 9.4093 6.9127 2.3154 22 1 9.1758 7.6941 4.5993 23 1 7.9922 5.7069 3.8705 24 6 5.0026 5.4029 1.2650 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 3.8340 0.9763 -0.8892 31 1 3.8333 0.9767 0.8908 32 1 5.8076 2.5810 0.0015 33 1 4.6820 6.4460 -0.9841 34 1 4.1388 4.8906 -1.6895 35 1 6.0936 6.2433 -2.9426 36 1 6.3052 4.4774 -2.7017 37 1 8.3109 5.3908 -1.6866 38 1 7.4144 6.7736 -0.9822 39 1 7.7236 5.0116 2.0536 40 1 8.1215 6.4296 1.0418 41 1 7.7730 9.7990 3.6631 42 1 4.0967 5.9669 1.0428 43 1 4.8078 4.6793 2.0564 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111574887.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:53 Heat of formation + Delta-G solvation = -52.957716 kcal Electronic energy + Delta-G solvation = -23364.218697 eV Core-core repulsion = 20024.255069 eV Total energy + Delta-G solvation = -3339.963629 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.39440 -38.74331 -37.42784 -34.49861 -33.54842 -31.78412 -31.65120 -29.88352 -28.71592 -27.02542 -25.16308 -24.04840 -23.02335 -21.43983 -20.75184 -19.80369 -19.02521 -17.39495 -17.02408 -16.58502 -16.42454 -15.84931 -15.06129 -14.84844 -14.54443 -14.16110 -13.87353 -13.63466 -13.50611 -13.03024 -12.99707 -12.87042 -12.65190 -12.02550 -11.65032 -11.59246 -11.44797 -11.28902 -11.10833 -10.91166 -10.76146 -10.69004 -10.41306 -10.37324 -10.09024 -9.90884 -9.87414 -9.49171 -9.39041 -8.90699 -8.62985 -7.04603 -5.89495 -3.20580 2.74289 2.80745 3.32476 3.48147 3.50085 3.87519 4.55964 4.59346 4.74765 4.76485 4.87481 4.92960 5.00488 5.04307 5.06557 5.08425 5.13602 5.40529 5.44734 5.61303 5.65786 5.66936 5.71550 5.83737 5.89070 5.91213 5.95562 6.16230 6.19297 6.32380 6.44727 6.52978 6.58720 6.69611 6.72605 6.75350 6.85352 7.00684 7.65335 7.68006 8.35146 8.40259 8.84485 9.71091 10.22012 11.26892 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022950 B = 0.004515 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.770657 B = 6199.800000 C = 6673.856705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.363 6.363 4 C 0.045 3.955 5 C 0.511 3.489 6 O -0.508 6.508 7 N -0.712 5.712 8 C 0.162 3.838 9 C -0.112 4.112 10 C -0.123 4.123 11 C -0.114 4.114 12 C -0.104 4.104 13 H 0.078 0.922 14 C 0.108 3.892 15 N -0.603 5.603 16 C -0.233 4.233 17 H 0.095 0.905 18 C 0.018 3.982 19 N -0.912 5.912 20 Si 0.884 3.116 21 H -0.286 1.286 22 H -0.303 1.303 23 H -0.276 1.276 24 C 0.142 3.858 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.396 0.604 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.028 0.972 40 H 0.071 0.929 41 H 0.262 0.738 42 H 0.062 0.938 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.327 -20.079 -10.381 22.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.281 6.281 4 C -0.035 4.035 5 C 0.295 3.705 6 O -0.381 6.381 7 N -0.366 5.366 8 C 0.076 3.924 9 C -0.151 4.151 10 C -0.160 4.160 11 C -0.152 4.152 12 C -0.124 4.124 13 H 0.096 0.904 14 C -0.017 4.017 15 N -0.329 5.329 16 C -0.360 4.360 17 H 0.112 0.888 18 C -0.179 4.179 19 N -0.557 5.557 20 Si 0.715 3.285 21 H -0.213 1.213 22 H -0.231 1.231 23 H -0.202 1.202 24 C 0.015 3.985 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.230 0.770 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.045 0.955 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -4.061 -19.029 -10.234 21.984 hybrid contribution 1.516 -1.283 0.514 2.051 sum -2.545 -20.311 -9.719 22.660 Atomic orbital electron populations 1.21726 0.93431 1.02114 1.03579 1.22533 0.96007 0.83545 1.00024 1.88045 1.18553 1.26105 1.95382 1.22202 0.83915 0.95142 1.02242 1.20132 0.82936 0.90274 0.77160 1.90753 1.49156 1.51397 1.46819 1.45902 1.06568 1.08127 1.75960 1.21678 0.94119 0.79239 0.97389 1.22665 0.97224 1.01153 0.94039 1.22578 0.95462 1.00635 0.97374 1.22499 0.97362 1.01111 0.94226 1.22764 0.93550 0.98755 0.97341 0.90402 1.22255 0.91269 0.95367 0.92790 1.45259 0.99578 1.19567 1.68540 1.18699 0.99243 0.91466 1.26587 0.88771 1.24958 0.97648 0.95756 0.99575 1.69819 1.31813 1.09025 1.45029 0.86974 0.83164 0.80598 0.77808 1.21321 1.23118 1.20170 1.21542 0.92579 0.92314 0.92090 0.91586 0.91685 0.91087 0.93349 0.93263 0.90617 0.90470 0.77002 0.89851 0.91364 0.91696 0.92269 0.92094 0.90120 0.95480 0.91141 0.92771 0.91933 0.96236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.06 0.48 6.66 37.16 0.25 0.73 16 3 O -0.36 -4.69 9.88 -55.14 -0.54 -5.24 16 4 C 0.05 0.48 6.42 36.01 0.23 0.71 16 5 C 0.51 7.53 7.23 -10.98 -0.08 7.45 16 6 O -0.51 -9.89 14.48 -14.35 -0.21 -10.10 16 7 N -0.71 -9.58 5.20 -45.68 -0.24 -9.81 16 8 C 0.16 2.74 0.92 -129.73 -0.12 2.62 16 9 C -0.11 -1.87 5.53 -24.95 -0.14 -2.01 16 10 C -0.12 -1.70 6.92 -24.56 -0.17 -1.87 16 11 C -0.11 -1.73 6.22 -24.95 -0.16 -1.89 16 12 C -0.10 -1.70 3.62 -88.53 -0.32 -2.02 16 13 H 0.08 1.03 7.71 -51.93 -0.40 0.63 16 14 C 0.11 2.31 4.15 -2.07 -0.01 2.30 16 15 N -0.60 -14.89 3.25 -169.40 -0.55 -15.44 16 16 C -0.23 -6.74 10.67 -15.06 -0.16 -6.90 16 17 H 0.09 2.92 8.06 -52.49 -0.42 2.49 16 18 C 0.02 0.54 5.46 -17.43 -0.10 0.45 16 19 N -0.91 -28.48 13.97 55.49 0.78 -27.70 16 20 Si 0.88 22.67 24.35 -169.99 -4.14 18.53 16 21 H -0.29 -6.94 6.33 56.52 0.36 -6.58 16 22 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 23 H -0.28 -6.99 6.48 56.52 0.37 -6.63 16 24 C 0.14 3.07 5.28 -3.25 -0.02 3.05 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.40 3.86 8.29 -40.82 -0.34 3.53 16 33 H 0.08 1.58 7.56 -51.93 -0.39 1.19 16 34 H 0.07 1.15 6.69 -51.93 -0.35 0.80 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.44 7.58 -51.93 -0.39 1.04 16 39 H 0.03 0.59 6.21 -51.93 -0.32 0.27 16 40 H 0.07 1.60 5.25 -51.93 -0.27 1.33 16 41 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 42 H 0.06 1.46 7.55 -51.93 -0.39 1.07 16 43 H 0.02 0.44 8.06 -51.93 -0.42 0.03 16 LS Contribution 333.09 15.07 5.02 5.02 Total: -1.00 -34.83 333.09 -7.43 -42.26 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.14 Total: 0.67 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -0.40 Total: 1.81 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.01 Total: -52.96 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.75 Total: -15.34 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.14 Total: 18.53 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.83 -7.43 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111574887.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.697 kcal (2) G-P(sol) polarization free energy of solvation -34.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds