Wall clock time and date at job start Tue Mar 31 2020 05:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 114.00159 * 2 1 4 4 H 1.08993 * 109.47173 * 330.00469 * 3 2 1 5 5 C 1.52999 * 109.47021 * 90.00334 * 3 2 1 6 6 C 1.50697 * 109.47007 * 210.00015 * 3 2 1 7 7 O 1.21283 * 120.00521 * 359.72812 * 6 3 2 8 8 N 1.34784 * 119.99774 * 179.97438 * 6 3 2 9 9 C 1.46499 * 119.99893 * 179.72962 * 8 6 3 10 10 C 1.54183 * 111.61146 * 299.01851 * 9 8 6 11 11 C 1.54088 * 104.66882 * 260.48711 * 10 9 8 12 12 C 1.54851 * 103.09893 * 322.89097 * 11 10 9 13 13 C 1.54186 * 104.30049 * 37.52991 * 12 11 10 14 14 H 1.09004 * 112.24318 * 98.78690 * 13 12 11 15 15 C 1.53788 * 109.12882 * 223.08148 * 13 12 11 16 16 N 1.47221 * 106.35869 * 132.67646 * 15 13 12 17 17 C 1.36938 * 126.70405 * 148.75743 * 16 15 13 18 18 H 1.07997 * 119.99842 * 180.02562 * 17 16 15 19 19 C 1.38816 * 120.00056 * 0.03509 * 17 16 15 20 20 N 1.31622 * 119.99781 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99946 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47091 * 89.99774 * 21 19 17 23 23 H 1.48497 * 109.47008 * 209.99729 * 21 19 17 24 24 H 1.48501 * 109.47225 * 329.99576 * 21 19 17 25 25 C 1.47224 * 106.59732 * 328.76673 * 16 15 13 26 26 H 1.09000 * 109.47123 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46641 * 299.99667 * 1 2 3 28 28 H 1.08997 * 109.47310 * 59.99358 * 1 2 3 29 29 H 1.08996 * 109.47277 * 179.97438 * 5 3 2 30 30 H 1.09003 * 109.47126 * 299.99977 * 5 3 2 31 31 H 1.09001 * 109.47339 * 60.00055 * 5 3 2 32 32 H 0.97005 * 119.99846 * 359.72750 * 8 6 3 33 33 H 1.09000 * 110.46753 * 20.30358 * 10 9 8 34 34 H 1.09005 * 110.46693 * 142.89672 * 10 9 8 35 35 H 1.08999 * 111.10095 * 204.21559 * 11 10 9 36 36 H 1.08996 * 110.22461 * 81.15835 * 11 10 9 37 37 H 1.09004 * 110.46772 * 278.82433 * 12 11 10 38 38 H 1.08994 * 110.46727 * 156.23629 * 12 11 10 39 39 H 1.09001 * 110.08097 * 251.90017 * 15 13 12 40 40 H 1.09004 * 110.07896 * 13.45349 * 15 13 12 41 41 H 0.97000 * 119.99914 * 180.02562 * 20 19 17 42 42 H 1.09000 * 110.07502 * 272.01724 * 25 16 15 43 43 H 1.08994 * 110.08365 * 150.45897 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5137 5 6 2.2177 1.7713 1.4425 6 6 3.3386 1.2639 -0.7104 7 8 3.7497 0.2182 -1.1670 8 7 4.0722 2.3878 -0.8340 9 6 5.3663 2.3461 -1.5194 10 6 6.3540 1.3977 -0.8107 11 6 7.2513 2.3261 0.0302 12 6 7.4188 3.5692 -0.8778 13 6 6.0418 3.7375 -1.5509 14 1 5.4309 4.4934 -1.0573 15 6 6.2451 4.0574 -3.0413 16 7 5.3344 3.1704 -3.7838 17 6 4.7191 3.4422 -4.9766 18 1 4.0678 2.7083 -5.4277 19 6 4.9327 4.6609 -5.6060 20 7 5.7262 5.5554 -5.0559 21 14 4.0939 5.0312 -7.2334 22 1 2.7804 5.6752 -6.9780 23 1 4.9470 5.9469 -8.0328 24 1 3.8876 3.7661 -7.9831 25 6 5.2142 1.9342 -2.9933 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 2.6615 2.7669 1.4425 30 1 1.2569 1.8014 1.9564 31 1 2.8830 1.0774 1.9563 32 1 3.7433 3.2242 -0.4691 33 1 5.8165 0.6902 -0.1794 34 1 6.9659 0.8692 -1.5417 35 1 8.2167 1.8619 0.2317 36 1 6.7505 2.5923 0.9611 37 1 8.1903 3.3925 -1.6273 38 1 7.6609 4.4479 -0.2802 39 1 5.9949 5.1000 -3.2379 40 1 7.2777 3.8593 -3.3291 41 1 5.8752 6.4072 -5.4955 42 1 6.0035 1.2352 -3.2697 43 1 4.2371 1.4796 -3.1559 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111628647.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:52 Heat of formation + Delta-G solvation = -54.746022 kcal Electronic energy + Delta-G solvation = -23814.380923 eV Core-core repulsion = 20474.339748 eV Total energy + Delta-G solvation = -3340.041175 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.31146 -38.69917 -37.11490 -34.52211 -33.53047 -31.71874 -31.17215 -29.36567 -27.66828 -26.89259 -24.73819 -24.71775 -23.69232 -21.24178 -20.24620 -19.41364 -18.82098 -17.39730 -16.87347 -16.50512 -15.62535 -15.43151 -14.89915 -14.75017 -14.61154 -14.01451 -13.78310 -13.47083 -13.30676 -12.84382 -12.65131 -12.51591 -12.40595 -11.91321 -11.63141 -11.42963 -11.24724 -11.19242 -10.94901 -10.76556 -10.68177 -10.57830 -10.24894 -10.20272 -9.97711 -9.92682 -9.73309 -9.48324 -9.13769 -8.72914 -8.52906 -6.84335 -5.63060 -3.07414 2.92561 3.08439 3.39455 3.45020 3.47291 4.02459 4.48758 4.71044 4.83152 4.90525 5.01203 5.06404 5.15449 5.26813 5.27549 5.39614 5.49319 5.55168 5.56376 5.71823 5.81921 5.86895 5.90682 5.92985 6.04320 6.10730 6.18708 6.28990 6.45028 6.49547 6.58998 6.71636 6.79459 6.86788 6.96409 7.22395 7.47728 7.62920 7.80458 7.90980 8.40578 8.58541 9.22739 9.83043 10.51044 11.37871 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015131 B = 0.005955 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.113858 B = 4701.051030 C = 5994.991629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.067 3.933 4 H 0.086 0.914 5 C -0.168 4.168 6 C 0.513 3.487 7 O -0.518 6.518 8 N -0.703 5.703 9 C 0.163 3.837 10 C -0.118 4.118 11 C -0.123 4.123 12 C -0.113 4.113 13 C -0.112 4.112 14 H 0.074 0.926 15 C 0.139 3.861 16 N -0.598 5.598 17 C -0.214 4.214 18 H 0.077 0.923 19 C -0.014 4.014 20 N -0.923 5.923 21 Si 0.915 3.085 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.136 3.864 26 H 0.088 0.912 27 H 0.041 0.959 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.395 0.605 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.123 0.877 40 H 0.012 0.988 41 H 0.252 0.748 42 H 0.027 0.973 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.014 -3.923 14.488 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.006 3.994 4 H 0.103 0.897 5 C -0.226 4.226 6 C 0.297 3.703 7 O -0.393 6.393 8 N -0.355 5.355 9 C 0.076 3.924 10 C -0.156 4.156 11 C -0.161 4.161 12 C -0.151 4.151 13 C -0.133 4.133 14 H 0.092 0.908 15 C 0.014 3.986 16 N -0.321 5.321 17 C -0.342 4.342 18 H 0.095 0.905 19 C -0.208 4.208 20 N -0.573 5.573 21 Si 0.745 3.255 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.009 3.991 26 H 0.107 0.893 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.230 0.770 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.140 0.860 40 H 0.030 0.970 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.630 -4.706 13.929 15.415 hybrid contribution -0.878 0.842 -0.641 1.375 sum -5.508 -3.865 13.288 14.895 Atomic orbital electron populations 1.22858 0.80955 1.03013 0.99948 1.88039 1.19393 1.25375 1.94916 1.21980 0.94229 0.86670 0.96560 0.89657 1.22217 1.03066 1.02020 0.95297 1.20196 0.85626 0.84358 0.80130 1.90706 1.70938 1.30262 1.47348 1.45946 1.20551 1.10477 1.58531 1.21753 0.81343 0.96106 0.93152 1.22489 0.96635 0.97314 0.99198 1.22399 0.99091 0.96515 0.98096 1.22442 0.97216 0.97115 0.98318 1.23008 0.94994 0.94165 1.01123 0.90807 1.22077 0.92120 1.00520 0.83900 1.44587 1.53028 1.12574 1.21931 1.19116 1.20654 0.99471 0.94966 0.90530 1.24750 1.00117 0.96675 0.99285 1.69600 1.40933 1.07757 1.38970 0.86058 0.78560 0.77805 0.83044 1.21711 1.21621 1.20746 1.21653 0.99282 0.90025 0.88170 0.89334 0.94069 0.93781 0.90920 0.91542 0.91182 0.77024 0.91192 0.90980 0.92011 0.92328 0.91058 0.92068 0.85996 0.96994 0.93732 0.95570 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.38 16 2 O -0.36 -5.17 9.88 -55.14 -0.54 -5.72 16 3 C 0.07 0.87 3.14 -27.88 -0.09 0.78 16 4 H 0.09 0.97 7.79 -51.93 -0.40 0.56 16 5 C -0.17 -1.63 9.42 37.16 0.35 -1.28 16 6 C 0.51 8.60 6.22 -10.98 -0.07 8.53 16 7 O -0.52 -10.79 14.08 -14.35 -0.20 -10.99 16 8 N -0.70 -11.21 5.12 -45.83 -0.23 -11.44 16 9 C 0.16 2.99 0.93 -129.89 -0.12 2.87 16 10 C -0.12 -1.96 5.60 -25.54 -0.14 -2.10 16 11 C -0.12 -1.72 6.86 -25.19 -0.17 -1.89 16 12 C -0.11 -1.74 6.38 -25.14 -0.16 -1.90 16 13 C -0.11 -2.06 3.67 -88.69 -0.33 -2.38 16 14 H 0.07 1.27 7.69 -51.93 -0.40 0.87 16 15 C 0.14 3.31 5.77 -3.24 -0.02 3.29 16 16 N -0.60 -15.52 3.39 -171.11 -0.58 -16.10 16 17 C -0.21 -6.04 10.34 -15.06 -0.16 -6.20 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 19 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 20 N -0.92 -26.52 10.08 55.49 0.56 -25.96 16 21 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.14 3.11 6.04 -3.23 -0.02 3.09 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.32 7.87 -51.93 -0.41 -0.09 16 28 H 0.04 0.41 8.08 -51.93 -0.42 0.00 16 29 H 0.07 0.59 7.57 -51.93 -0.39 0.20 16 30 H 0.07 0.53 7.87 -51.93 -0.41 0.12 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.40 5.27 7.71 -40.82 -0.31 4.95 16 33 H 0.07 1.20 6.66 -51.93 -0.35 0.86 16 34 H 0.07 1.26 7.23 -51.93 -0.38 0.88 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.17 7.17 -51.93 -0.37 0.79 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.12 3.25 5.45 -51.93 -0.28 2.97 16 40 H 0.01 0.30 7.12 -51.93 -0.37 -0.07 16 41 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.03 0.62 7.18 -51.93 -0.37 0.25 16 43 H 0.05 1.16 6.84 -51.93 -0.36 0.80 16 LS Contribution 333.18 15.07 5.02 5.02 Total: -1.00 -32.84 333.18 -7.81 -40.65 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.88 Total: 3.66 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 0.08 Total: 3.73 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.26 Total: -53.50 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.75 Total: -16.71 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.84 -7.81 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111628647.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.094 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds