Wall clock time and date at job start Tue Mar 31 2020 05:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00087 * 2 1 4 4 C 1.53001 * 109.47315 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47429 * 305.00806 * 4 3 2 6 6 C 1.53002 * 109.46489 * 65.00552 * 4 3 2 7 7 C 1.53002 * 109.47167 * 185.00018 * 4 3 2 8 8 C 1.50705 * 109.46959 * 175.00405 * 7 4 3 9 9 O 1.21282 * 119.99695 * 0.02562 * 8 7 4 10 10 N 1.34775 * 119.99753 * 179.97438 * 8 7 4 11 11 C 1.46504 * 119.99808 * 179.97438 * 10 8 7 12 12 H 1.09004 * 115.51481 * 350.59045 * 11 10 8 13 13 C 1.52994 * 117.44264 * 205.17175 * 11 10 8 14 14 H 1.08999 * 119.54506 * 4.11634 * 13 11 10 15 15 C 1.54389 * 118.12103 * 159.21910 * 13 11 10 16 16 N 1.51693 * 102.90068 * 88.04532 * 15 13 11 17 17 C 1.36932 * 127.61917 * 140.54077 * 16 15 13 18 18 H 1.07997 * 120.00339 * 194.72302 * 17 16 15 19 19 C 1.38819 * 119.99784 * 14.71823 * 17 16 15 20 20 N 1.31618 * 119.99701 * 9.01945 * 19 17 16 21 21 Si 1.86800 * 120.00033 * 189.01543 * 19 17 16 22 22 H 1.48494 * 109.46881 * 90.00182 * 21 19 17 23 23 H 1.48499 * 109.46840 * 210.00011 * 21 19 17 24 24 H 1.48494 * 109.47103 * 330.00126 * 21 19 17 25 25 C 1.48151 * 104.54509 * 320.30984 * 16 15 13 26 26 C 1.52995 * 117.43821 * 135.99923 * 11 10 8 27 27 H 1.08995 * 119.54533 * 355.88543 * 26 11 10 28 28 H 1.08994 * 109.47146 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47357 * 59.99826 * 1 2 3 30 30 H 1.09005 * 109.46868 * 299.99825 * 1 2 3 31 31 H 1.08995 * 109.47368 * 300.00545 * 3 2 1 32 32 H 1.09002 * 109.46708 * 60.00071 * 3 2 1 33 33 H 1.09006 * 109.47282 * 299.99406 * 6 4 3 34 34 H 1.08990 * 109.47734 * 59.99964 * 6 4 3 35 35 H 1.09009 * 109.46820 * 180.02562 * 6 4 3 36 36 H 1.08996 * 109.47368 * 295.00544 * 7 4 3 37 37 H 1.08998 * 109.46822 * 55.00444 * 7 4 3 38 38 H 0.97000 * 119.99935 * 0.02562 * 10 8 7 39 39 H 1.09003 * 110.40280 * 205.97379 * 15 13 11 40 40 H 1.08999 * 110.40583 * 328.40286 * 15 13 11 41 41 H 0.97002 * 120.00223 * 180.02562 * 20 19 17 42 42 H 1.08995 * 110.40773 * 281.02983 * 25 16 15 43 43 H 1.08999 * 110.40250 * 158.59296 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8508 0.5685 0.8426 6 6 3.9961 0.5366 -1.3065 7 6 4.1573 2.5770 0.1264 8 6 5.6538 2.4494 0.2504 9 8 6.1719 1.3529 0.2389 10 7 6.4163 3.5539 0.3731 11 6 7.8711 3.4299 0.4943 12 1 8.2456 2.4163 0.6374 13 6 8.6193 4.5640 1.1977 14 1 8.0563 5.3848 1.6421 15 6 10.0217 4.2654 1.7702 16 7 10.9353 4.5482 0.5928 17 6 12.1609 5.1587 0.6136 18 1 12.6035 5.5128 -0.3057 19 6 12.8344 5.3225 1.8163 20 7 12.3848 4.7388 2.9070 21 14 14.3786 6.3711 1.8869 22 1 14.0086 7.7773 2.1882 23 1 15.2779 5.8570 2.9509 24 1 15.0768 6.3127 0.5776 25 6 10.2073 4.0114 -0.5805 26 6 8.7315 4.3897 -0.3298 27 1 8.2523 5.0806 -1.0233 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5138 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 3.5532 -0.4554 -1.3961 34 1 3.6808 1.1527 -2.1485 35 1 5.0828 0.4501 -1.3059 36 1 3.9149 3.1645 -0.7591 37 1 3.7603 3.0735 1.0118 38 1 6.0019 4.4309 0.3820 39 1 10.2457 4.9389 2.5974 40 1 10.0860 3.2272 2.0960 41 1 12.8552 4.8535 3.7476 42 1 10.3183 2.9285 -0.6338 43 1 10.5684 4.4771 -1.4975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115054118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:13 Heat of formation + Delta-G solvation = -30.243838 kcal Electronic energy + Delta-G solvation = -21833.960627 eV Core-core repulsion = 18494.981946 eV Total energy + Delta-G solvation = -3338.978681 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.01943 -38.62560 -38.02736 -34.90914 -34.28996 -32.63443 -30.30100 -28.31225 -27.44932 -27.12858 -25.84675 -25.35859 -22.16281 -20.83834 -20.47677 -19.81038 -19.20560 -17.32659 -16.85162 -16.57321 -16.29499 -16.07391 -15.38808 -15.17969 -14.68556 -14.19872 -13.83934 -13.60940 -13.22515 -13.12683 -12.74662 -12.46694 -12.43246 -12.16347 -11.86441 -11.50623 -11.45737 -11.25099 -11.09060 -10.99934 -10.86962 -10.82014 -10.43263 -10.19799 -10.12302 -9.97223 -9.71970 -9.64199 -9.19645 -8.74149 -8.32317 -6.87563 -5.78292 -3.11540 2.65098 3.02774 3.38971 3.44090 3.46285 3.57568 4.31284 4.47107 4.51687 4.62791 4.76089 4.94233 4.98298 5.07903 5.11953 5.15240 5.16237 5.29189 5.33817 5.35705 5.39225 5.54887 5.57170 5.67957 5.79772 5.89715 5.98977 6.14497 6.15665 6.22951 6.40908 6.53622 6.69712 6.81633 6.85670 6.89842 7.31033 7.51724 7.59350 7.70349 8.15451 8.31203 9.07146 9.73553 10.50342 11.36669 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.061143 B = 0.002525 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.831437 B =11084.993052 C =11196.500613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.066 3.934 4 C -0.075 4.075 5 H 0.088 0.912 6 C -0.150 4.150 7 C -0.135 4.135 8 C 0.516 3.484 9 O -0.532 6.532 10 N -0.700 5.700 11 C 0.095 3.905 12 H 0.131 0.869 13 C -0.179 4.179 14 H 0.101 0.899 15 C 0.185 3.815 16 N -0.599 5.599 17 C -0.224 4.224 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.917 5.917 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.158 3.842 26 C -0.183 4.183 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.398 0.602 39 H 0.092 0.908 40 H 0.032 0.968 41 H 0.254 0.746 42 H 0.026 0.974 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.091 -3.040 -5.738 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.011 4.011 4 C -0.094 4.094 5 H 0.107 0.893 6 C -0.207 4.207 7 C -0.176 4.176 8 C 0.302 3.698 9 O -0.409 6.409 10 N -0.348 5.348 11 C -0.011 4.011 12 H 0.149 0.851 13 C -0.200 4.200 14 H 0.119 0.881 15 C 0.060 3.940 16 N -0.323 5.323 17 C -0.352 4.352 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.564 5.564 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.031 3.969 26 C -0.204 4.204 27 H 0.120 0.880 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.232 0.768 39 H 0.110 0.890 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.372 -3.936 -5.600 23.395 hybrid contribution 0.208 1.463 0.104 1.482 sum -22.164 -2.473 -5.496 22.969 Atomic orbital electron populations 1.22735 0.81197 1.02746 0.99847 1.87900 1.19448 1.27905 1.95362 1.22608 0.93834 0.84678 0.99998 1.20821 0.91841 0.95330 1.01361 0.89341 1.21895 1.03372 1.00510 0.94893 1.21643 0.92472 0.99130 1.04322 1.20476 0.89006 0.84334 0.75982 1.90692 1.74851 1.26132 1.49215 1.45431 1.06625 1.08903 1.73853 1.21874 0.77729 0.97712 1.03771 0.85096 1.24565 1.00217 0.99364 0.95820 0.88106 1.21684 0.81665 0.99165 0.91454 1.46040 1.17704 1.67555 1.01032 1.19019 0.92563 1.29557 0.94080 0.90514 1.24881 0.98698 1.00641 0.96265 1.69883 1.41256 1.45741 0.99473 0.86102 0.82409 0.79895 0.77258 1.21582 1.21678 1.20580 1.21064 0.87649 0.96181 0.91965 1.24354 0.97944 1.03052 0.95066 0.87996 0.89655 0.94177 0.94148 0.93266 0.93334 0.92207 0.93648 0.90413 0.88757 0.88777 0.76826 0.88989 0.95001 0.93572 0.95610 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.87 10.24 -35.23 -0.36 -4.24 16 3 C 0.07 0.54 5.32 37.16 0.20 0.74 16 4 C -0.07 -0.75 2.27 -90.62 -0.21 -0.96 16 5 H 0.09 1.07 7.95 -51.93 -0.41 0.66 16 6 C -0.15 -1.66 8.83 37.16 0.33 -1.34 16 7 C -0.14 -1.18 5.17 -27.88 -0.14 -1.32 16 8 C 0.52 6.75 7.55 -10.98 -0.08 6.67 16 9 O -0.53 -9.17 13.53 5.56 0.08 -9.09 16 10 N -0.70 -8.95 5.56 -53.81 -0.30 -9.25 16 11 C 0.10 1.59 5.97 -67.93 -0.41 1.18 16 12 H 0.13 2.51 7.40 -51.93 -0.38 2.13 16 13 C -0.18 -3.33 6.96 -89.29 -0.62 -3.95 16 14 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 15 C 0.19 4.44 5.92 -0.37 0.00 4.43 16 16 N -0.60 -15.42 3.45 -165.82 -0.57 -15.99 16 17 C -0.22 -6.26 10.36 -15.06 -0.16 -6.41 16 18 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 19 C -0.01 -0.22 5.42 -17.43 -0.09 -0.32 16 20 N -0.92 -26.92 10.82 55.49 0.60 -26.32 16 21 Si 0.91 21.99 29.56 -169.99 -5.03 16.97 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.16 3.37 7.05 -2.40 -0.02 3.35 16 26 C -0.18 -3.24 7.05 -89.29 -0.63 -3.87 16 27 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.68 7.82 -51.93 -0.41 0.27 16 34 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 1.06 5.95 -51.92 -0.31 0.75 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.40 3.86 8.83 -40.82 -0.36 3.50 16 39 H 0.09 2.44 6.57 -51.93 -0.34 2.10 16 40 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 349.90 15.07 5.27 5.27 Total: -1.00 -32.74 349.90 -8.29 -41.02 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.26 Total: 2.09 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -0.72 Total: -0.47 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.27 Total: -51.56 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.29 Total: -13.33 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.74 -8.29 -41.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115054118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.781 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds