Wall clock time and date at job start Tue Mar 31 2020 05:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42909 * 113.99598 * 2 1 4 4 C 1.52995 * 109.46959 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47253 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47003 * 54.99948 * 5 4 3 7 7 C 1.52998 * 109.47014 * 294.99960 * 5 4 3 8 8 C 1.50700 * 109.47289 * 175.00108 * 5 4 3 9 9 O 1.21273 * 120.00297 * 359.97438 * 8 5 4 10 10 N 1.34782 * 119.99862 * 180.02562 * 8 5 4 11 11 C 1.46495 * 119.99954 * 179.97438 * 10 8 5 12 12 H 1.08999 * 115.49509 * 350.37803 * 11 10 8 13 13 C 1.53001 * 117.44437 * 204.99718 * 11 10 8 14 14 H 1.08998 * 119.53588 * 5.71500 * 13 11 10 15 15 C 1.54387 * 118.12347 * 160.81106 * 13 11 10 16 16 N 1.48138 * 104.62001 * 89.20684 * 15 13 11 17 17 C 1.36944 * 127.84114 * 140.41063 * 16 15 13 18 18 H 1.07995 * 119.99483 * 338.93940 * 17 16 15 19 19 C 1.38807 * 120.00029 * 158.92878 * 17 16 15 20 20 N 1.31619 * 120.00447 * 335.61590 * 19 17 16 21 21 Si 1.86805 * 119.99680 * 155.61871 * 19 17 16 22 22 H 1.48495 * 109.47169 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46757 * 240.00038 * 21 19 17 24 24 H 1.48496 * 109.47225 * 120.00112 * 21 19 17 25 25 C 1.48141 * 104.32594 * 320.67796 * 16 15 13 26 26 C 1.53984 * 104.81922 * 39.27207 * 25 16 15 27 27 H 1.09004 * 118.03470 * 115.98534 * 26 25 16 28 28 H 1.09005 * 109.46915 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46966 * 299.99194 * 1 2 3 30 30 H 1.08993 * 109.47408 * 60.00033 * 1 2 3 31 31 H 1.09004 * 109.46886 * 60.00141 * 3 2 1 32 32 H 1.08995 * 109.46791 * 300.00235 * 3 2 1 33 33 H 1.09004 * 109.47362 * 60.00242 * 4 3 2 34 34 H 1.09002 * 109.47358 * 300.00029 * 4 3 2 35 35 H 1.09005 * 109.47024 * 59.99959 * 7 5 4 36 36 H 1.08999 * 109.46941 * 179.97438 * 7 5 4 37 37 H 1.08997 * 109.47226 * 299.99852 * 7 5 4 38 38 H 0.97003 * 120.00346 * 359.97438 * 10 8 5 39 39 H 1.08999 * 110.40784 * 330.42411 * 15 13 11 40 40 H 1.09001 * 110.50666 * 208.04832 * 15 13 11 41 41 H 0.96996 * 119.99488 * 354.47572 * 20 19 17 42 42 H 1.09001 * 110.41080 * 158.10669 * 25 16 15 43 43 H 1.09002 * 110.40681 * 280.54106 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5353 1.1848 -0.0006 5 6 4.1576 2.5826 0.0000 6 1 3.7672 3.1537 0.8423 7 6 3.8076 3.2972 -1.3068 8 6 5.6550 2.4658 0.1232 9 8 6.1735 1.3724 0.2031 10 7 6.4180 3.5766 0.1456 11 6 7.8736 3.4631 0.2659 12 1 8.2490 2.4659 0.4956 13 6 8.6270 4.6545 0.8606 14 1 8.0665 5.5001 1.2591 15 6 10.0489 4.4145 1.4123 16 7 10.9423 4.6331 0.2511 17 6 12.1604 5.2587 0.2343 18 1 12.4254 5.9457 1.0243 19 6 13.0543 5.0097 -0.7979 20 7 12.9839 3.8814 -1.4718 21 14 14.3576 6.2762 -1.2306 22 1 14.2252 7.4500 -0.3307 23 1 14.1775 6.7103 -2.6393 24 1 15.7056 5.6753 -1.0663 25 6 10.2163 4.0271 -0.8892 26 6 8.7394 4.3953 -0.6561 27 1 8.2505 5.0396 -1.3870 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.6885 1.8465 0.8900 32 1 1.6884 1.8464 -0.8899 33 1 3.8567 0.6441 -0.8909 34 1 3.8574 0.6438 0.8891 35 1 2.7245 3.3817 -1.3959 36 1 4.2506 4.2931 -1.3061 37 1 4.1980 2.7261 -2.1491 38 1 6.0034 4.4512 0.0820 39 1 10.1465 3.3931 1.7800 40 1 10.2757 5.1265 2.2059 41 1 12.3612 3.1904 -1.1968 42 1 10.5680 4.4485 -1.8309 43 1 10.3404 2.9442 -0.8865 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115266235.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:05 Heat of formation + Delta-G solvation = -36.034223 kcal Electronic energy + Delta-G solvation = -21885.642278 eV Core-core repulsion = 18546.412507 eV Total energy + Delta-G solvation = -3339.229771 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.14424 -38.66362 -38.10755 -35.09362 -34.66034 -32.77561 -30.27073 -29.32803 -27.42611 -26.68309 -25.70300 -24.92026 -22.63972 -21.29847 -20.50484 -19.75427 -19.37313 -17.48796 -17.41509 -16.72090 -16.38798 -16.24038 -15.38793 -15.10838 -14.49091 -14.06464 -13.96840 -13.72322 -13.57099 -13.33708 -13.15519 -12.88526 -12.35831 -12.21173 -12.01240 -11.86452 -11.65581 -11.49049 -11.22254 -11.17654 -10.79980 -10.68784 -10.56804 -10.25888 -10.08471 -10.00558 -9.79148 -9.66534 -9.28174 -8.56411 -8.36641 -7.00587 -6.14425 -3.20589 2.55306 2.92997 3.48576 3.49839 3.53728 3.66195 4.09945 4.37108 4.54702 4.57062 4.62512 4.84103 4.86807 4.95063 4.99461 5.03637 5.08862 5.10756 5.21058 5.28858 5.30155 5.41299 5.42836 5.46752 5.67735 5.70720 5.76536 5.90978 5.94600 6.02257 6.11533 6.37526 6.57626 6.66985 6.74114 6.81605 6.96673 6.99020 7.49352 7.73238 8.21130 8.43448 8.96109 9.76757 10.39454 11.21649 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.052773 B = 0.002588 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.449914 B =10816.136400 C =10843.017577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.061 3.939 4 C -0.101 4.101 5 C -0.106 4.106 6 H 0.099 0.901 7 C -0.149 4.149 8 C 0.519 3.481 9 O -0.534 6.534 10 N -0.697 5.697 11 C 0.096 3.904 12 H 0.134 0.866 13 C -0.175 4.175 14 H 0.103 0.897 15 C 0.154 3.846 16 N -0.597 5.597 17 C -0.332 4.332 18 H 0.066 0.934 19 C -0.026 4.026 20 N -0.918 5.918 21 Si 1.075 2.925 22 H -0.292 1.292 23 H -0.289 1.289 24 H -0.293 1.293 25 C 0.166 3.834 26 C -0.178 4.178 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.399 0.601 39 H 0.026 0.974 40 H 0.054 0.946 41 H 0.270 0.730 42 H 0.068 0.932 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.777 -0.418 2.360 24.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.139 4.139 5 C -0.128 4.128 6 H 0.117 0.883 7 C -0.206 4.206 8 C 0.305 3.695 9 O -0.410 6.410 10 N -0.345 5.345 11 C -0.011 4.011 12 H 0.152 0.848 13 C -0.196 4.196 14 H 0.121 0.879 15 C 0.028 3.972 16 N -0.321 5.321 17 C -0.459 4.459 18 H 0.083 0.917 19 C -0.228 4.228 20 N -0.558 5.558 21 Si 0.905 3.095 22 H -0.218 1.218 23 H -0.216 1.216 24 H -0.220 1.220 25 C 0.039 3.961 26 C -0.199 4.199 27 H 0.124 0.876 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.233 0.767 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -22.896 -0.945 1.371 22.957 hybrid contribution -1.780 0.529 1.113 2.165 sum -24.676 -0.417 2.484 24.804 Atomic orbital electron populations 1.22742 0.81059 1.02818 0.99891 1.87902 1.19636 1.28034 1.95396 1.22618 0.94113 0.84683 1.00178 1.21284 0.92113 0.95332 1.05176 1.21200 0.92229 0.98588 1.00757 0.88331 1.21875 1.02283 1.00416 0.96036 1.20479 0.88903 0.84209 0.75861 1.90726 1.74792 1.26636 1.48804 1.45355 1.06335 1.08852 1.73984 1.22503 0.77777 0.97231 1.03553 0.84840 1.24317 0.98842 0.98833 0.97608 0.87891 1.21128 0.86611 0.98053 0.91448 1.45270 1.18104 1.67628 1.01136 1.19780 0.91395 1.21176 1.13561 0.91670 1.25897 0.99596 1.00157 0.97173 1.70698 1.37029 1.04059 1.44013 0.83386 0.75396 0.74708 0.76036 1.21808 1.21620 1.21996 1.21022 0.85731 0.96047 0.93264 1.25060 0.98188 1.03164 0.93517 0.87606 0.89598 0.94117 0.94096 0.93324 0.92984 0.90163 0.90040 0.91337 0.91851 0.91548 0.76745 0.95612 0.92782 0.91883 0.91390 0.95382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.94 10.70 -35.23 -0.38 -4.32 16 3 C 0.06 0.49 5.69 37.15 0.21 0.70 16 4 C -0.10 -1.01 4.40 -26.73 -0.12 -1.13 16 5 C -0.11 -0.94 2.72 -91.77 -0.25 -1.19 16 6 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 7 C -0.15 -1.05 8.84 37.16 0.33 -0.72 16 8 C 0.52 6.90 7.15 -10.98 -0.08 6.83 16 9 O -0.53 -9.51 15.48 5.56 0.09 -9.43 16 10 N -0.70 -8.82 5.46 -51.65 -0.28 -9.11 16 11 C 0.10 1.57 6.20 -65.70 -0.41 1.16 16 12 H 0.13 2.52 7.40 -51.93 -0.38 2.14 16 13 C -0.17 -3.03 6.91 -89.22 -0.62 -3.65 16 14 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 15 C 0.15 3.28 7.04 -2.41 -0.02 3.26 16 16 N -0.60 -15.40 3.23 -169.12 -0.55 -15.94 16 17 C -0.33 -9.45 10.19 -15.06 -0.15 -9.60 16 18 H 0.07 1.84 7.94 -52.49 -0.42 1.43 16 19 C -0.03 -0.76 5.12 -17.43 -0.09 -0.85 16 20 N -0.92 -28.10 12.82 55.49 0.71 -27.39 16 21 Si 1.08 25.53 29.98 -169.99 -5.10 20.43 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.17 3.92 5.01 -2.63 -0.01 3.90 16 26 C -0.18 -3.28 7.22 -87.20 -0.63 -3.91 16 27 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.35 6.57 -51.93 -0.34 0.01 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 0.95 7.95 -51.93 -0.41 0.54 16 35 H 0.07 0.36 6.57 -51.93 -0.34 0.02 16 36 H 0.06 0.39 7.57 -51.93 -0.39 0.00 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.40 3.81 8.25 -40.82 -0.34 3.48 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.27 8.33 6.41 -40.82 -0.26 8.07 16 42 H 0.07 1.76 7.47 -51.93 -0.39 1.37 16 43 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 LS Contribution 349.84 15.07 5.27 5.27 Total: -1.00 -34.26 349.84 -8.07 -42.33 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -7.12 Total: 2.04 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -0.72 Total: -3.89 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.12 Total: -52.44 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.29 Total: -13.75 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.10 Total: 20.43 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.26 -8.07 -42.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115266235.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.298 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds