Wall clock time and date at job start Tue Mar 31 2020 05:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42909 * 113.99598 * 2 1 4 4 C 1.52995 * 109.46959 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47253 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47003 * 54.99948 * 5 4 3 7 7 C 1.52998 * 109.47014 * 294.99960 * 5 4 3 8 8 C 1.50700 * 109.47289 * 175.00108 * 5 4 3 9 9 O 1.21273 * 120.00297 * 359.97438 * 8 5 4 10 10 N 1.34782 * 119.99862 * 180.02562 * 8 5 4 11 11 C 1.46495 * 119.99954 * 179.97438 * 10 8 5 12 12 H 1.08999 * 115.49509 * 350.37803 * 11 10 8 13 13 C 1.53001 * 117.44437 * 204.99718 * 11 10 8 14 14 H 1.08998 * 119.53588 * 5.71500 * 13 11 10 15 15 C 1.54387 * 118.12347 * 160.81106 * 13 11 10 16 16 N 1.48138 * 104.62001 * 89.20684 * 15 13 11 17 17 C 1.36944 * 127.84114 * 140.41063 * 16 15 13 18 18 H 1.07995 * 119.99483 * 338.93940 * 17 16 15 19 19 C 1.38807 * 120.00029 * 158.92878 * 17 16 15 20 20 N 1.31619 * 120.00447 * 335.61590 * 19 17 16 21 21 Si 1.86805 * 119.99680 * 155.61871 * 19 17 16 22 22 H 1.48495 * 109.47169 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46757 * 240.00038 * 21 19 17 24 24 H 1.48496 * 109.47225 * 120.00112 * 21 19 17 25 25 C 1.48141 * 104.32594 * 320.67796 * 16 15 13 26 26 C 1.53984 * 104.81922 * 39.27207 * 25 16 15 27 27 H 1.09004 * 118.03470 * 115.98534 * 26 25 16 28 28 H 1.09005 * 109.46915 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46966 * 299.99194 * 1 2 3 30 30 H 1.08993 * 109.47408 * 60.00033 * 1 2 3 31 31 H 1.09004 * 109.46886 * 60.00141 * 3 2 1 32 32 H 1.08995 * 109.46791 * 300.00235 * 3 2 1 33 33 H 1.09004 * 109.47362 * 60.00242 * 4 3 2 34 34 H 1.09002 * 109.47358 * 300.00029 * 4 3 2 35 35 H 1.09005 * 109.47024 * 59.99959 * 7 5 4 36 36 H 1.08999 * 109.46941 * 179.97438 * 7 5 4 37 37 H 1.08997 * 109.47226 * 299.99852 * 7 5 4 38 38 H 0.97003 * 120.00346 * 359.97438 * 10 8 5 39 39 H 1.08999 * 110.40784 * 330.42411 * 15 13 11 40 40 H 1.09001 * 110.50666 * 208.04832 * 15 13 11 41 41 H 0.96996 * 119.99488 * 354.47572 * 20 19 17 42 42 H 1.09001 * 110.41080 * 158.10669 * 25 16 15 43 43 H 1.09002 * 110.40681 * 280.54106 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5353 1.1848 -0.0006 5 6 4.1576 2.5826 0.0000 6 1 3.7672 3.1537 0.8423 7 6 3.8076 3.2972 -1.3068 8 6 5.6550 2.4658 0.1232 9 8 6.1735 1.3724 0.2031 10 7 6.4180 3.5766 0.1456 11 6 7.8736 3.4631 0.2659 12 1 8.2490 2.4659 0.4956 13 6 8.6270 4.6545 0.8606 14 1 8.0665 5.5001 1.2591 15 6 10.0489 4.4145 1.4123 16 7 10.9423 4.6331 0.2511 17 6 12.1604 5.2587 0.2343 18 1 12.4254 5.9457 1.0243 19 6 13.0543 5.0097 -0.7979 20 7 12.9839 3.8814 -1.4718 21 14 14.3576 6.2762 -1.2306 22 1 14.2252 7.4500 -0.3307 23 1 14.1775 6.7103 -2.6393 24 1 15.7056 5.6753 -1.0663 25 6 10.2163 4.0271 -0.8892 26 6 8.7394 4.3953 -0.6561 27 1 8.2505 5.0396 -1.3870 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.6885 1.8465 0.8900 32 1 1.6884 1.8464 -0.8899 33 1 3.8567 0.6441 -0.8909 34 1 3.8574 0.6438 0.8891 35 1 2.7245 3.3817 -1.3959 36 1 4.2506 4.2931 -1.3061 37 1 4.1980 2.7261 -2.1491 38 1 6.0034 4.4512 0.0820 39 1 10.1465 3.3931 1.7800 40 1 10.2757 5.1265 2.2059 41 1 12.3612 3.1904 -1.1968 42 1 10.5680 4.4485 -1.8309 43 1 10.3404 2.9442 -0.8865 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115266235.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:04 Heat of formation + Delta-G solvation = -60.281570 kcal Electronic energy + Delta-G solvation = -21886.693722 eV Core-core repulsion = 18546.412507 eV Total energy + Delta-G solvation = -3340.281215 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.31869 -40.09139 -38.86861 -36.31666 -35.90216 -34.42996 -32.00536 -30.09641 -29.20905 -27.44021 -27.21471 -25.90396 -23.94198 -22.59976 -22.03200 -21.02723 -20.73664 -19.54129 -18.37403 -17.79689 -17.23081 -17.00561 -16.28536 -16.17351 -15.91371 -15.73736 -15.36417 -15.12129 -14.94009 -14.82347 -14.00551 -13.84551 -13.70640 -13.47213 -13.32550 -12.77560 -12.62920 -12.59448 -12.55965 -12.33117 -12.21005 -11.91997 -11.87991 -11.86586 -11.82527 -11.66973 -11.02111 -10.81997 -10.63905 -10.55489 -9.73872 -9.12771 -8.40930 -5.43802 1.47167 1.56874 1.65836 1.82036 1.86084 2.60719 2.67055 2.85771 3.16228 3.39940 3.53464 3.64866 3.78161 3.88225 3.98291 3.99542 4.21995 4.25431 4.29344 4.31992 4.40946 4.47789 4.57029 4.57945 4.68156 4.75287 4.83417 4.86340 4.89346 4.91884 4.96660 5.01043 5.15218 5.19726 5.24352 5.32813 5.44489 5.60328 6.22434 6.27393 6.48032 6.76896 7.18839 7.60922 8.27946 8.94860 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.052773 B = 0.002588 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.449914 B =10816.136400 C =10843.017577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.063 3.937 4 C -0.100 4.100 5 C -0.092 4.092 6 H 0.134 0.866 7 C -0.147 4.147 8 C 0.515 3.485 9 O -0.586 6.586 10 N -0.680 5.680 11 C 0.116 3.884 12 H 0.105 0.895 13 C -0.151 4.151 14 H 0.143 0.857 15 C 0.145 3.855 16 N -0.622 5.622 17 C -0.339 4.339 18 H 0.066 0.934 19 C -0.083 4.083 20 N -0.949 5.949 21 Si 1.129 2.871 22 H -0.268 1.268 23 H -0.286 1.286 24 H -0.290 1.290 25 C 0.169 3.831 26 C -0.181 4.181 27 H 0.132 0.868 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.420 0.580 39 H 0.015 0.985 40 H 0.063 0.937 41 H 0.252 0.748 42 H 0.036 0.964 43 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.608 2.214 2.901 27.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.013 4.013 4 C -0.139 4.139 5 C -0.113 4.113 6 H 0.152 0.848 7 C -0.204 4.204 8 C 0.303 3.697 9 O -0.466 6.466 10 N -0.330 5.330 11 C 0.009 3.991 12 H 0.123 0.877 13 C -0.172 4.172 14 H 0.161 0.839 15 C 0.020 3.980 16 N -0.348 5.348 17 C -0.467 4.467 18 H 0.084 0.916 19 C -0.278 4.278 20 N -0.591 5.591 21 Si 0.952 3.048 22 H -0.192 1.192 23 H -0.212 1.212 24 H -0.217 1.217 25 C 0.043 3.957 26 C -0.203 4.203 27 H 0.150 0.850 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.258 0.742 39 H 0.033 0.967 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -25.796 1.722 1.938 25.926 hybrid contribution -0.940 -0.407 1.017 1.443 sum -26.736 1.315 2.955 26.931 Atomic orbital electron populations 1.22921 0.79311 1.03673 1.01124 1.87856 1.21681 1.29368 1.95682 1.22651 0.92197 0.84404 1.02036 1.21237 0.94125 0.95686 1.02811 1.21206 0.88216 0.98517 1.03370 0.84787 1.21917 1.04114 1.00501 0.93881 1.21406 0.90816 0.83249 0.74180 1.90718 1.76081 1.28751 1.51024 1.45156 1.04272 1.10103 1.73433 1.22013 0.79957 0.95553 1.01615 0.87746 1.24180 0.96939 1.00177 0.95878 0.83946 1.21286 0.88389 0.97701 0.90670 1.45574 1.18255 1.67635 1.03297 1.20101 0.92555 1.20643 1.13384 0.91631 1.27442 1.01923 1.01064 0.97409 1.70834 1.37946 1.04969 1.45340 0.82695 0.72794 0.73034 0.76287 1.19232 1.21243 1.21721 1.20809 0.89254 0.94070 0.91530 1.24808 0.95507 1.04924 0.95039 0.85004 0.89131 0.92850 0.92795 0.91335 0.91001 0.92610 0.92516 0.88708 0.90184 0.93295 0.74168 0.96708 0.91819 0.93769 0.94520 0.98124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.43 -8.06 10.70 -148.98 -1.59 -9.65 16 3 C 0.06 0.87 5.69 71.98 0.41 1.28 16 4 C -0.10 -1.92 4.40 30.59 0.13 -1.79 16 5 C -0.09 -1.38 2.72 -11.54 -0.03 -1.41 16 6 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 7 C -0.15 -1.53 8.84 71.98 0.64 -0.90 16 8 C 0.51 12.95 7.15 87.66 0.63 13.58 16 9 O -0.59 -21.34 15.48 -3.01 -0.05 -21.39 16 10 N -0.68 -15.38 5.46 -435.71 -2.38 -17.76 16 11 C 0.12 3.70 6.20 46.44 0.29 3.99 16 12 H 0.10 4.05 7.40 -2.39 -0.02 4.04 16 13 C -0.15 -4.90 6.91 -9.89 -0.07 -4.97 16 14 H 0.14 3.60 8.14 -2.39 -0.02 3.58 16 15 C 0.14 6.14 7.04 86.54 0.61 6.75 16 16 N -0.62 -32.79 3.23 -688.98 -2.22 -35.01 16 17 C -0.34 -19.59 10.19 84.03 0.86 -18.73 16 18 H 0.07 3.71 7.94 -2.91 -0.02 3.68 16 19 C -0.08 -4.89 5.12 84.86 0.43 -4.45 16 20 N -0.95 -60.37 12.82 21.65 0.28 -60.09 16 21 Si 1.13 51.78 29.98 68.60 2.06 53.83 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 25 C 0.17 8.34 5.01 86.40 0.43 8.77 16 26 C -0.18 -6.53 7.22 -8.58 -0.06 -6.59 16 27 H 0.13 4.09 8.14 -2.38 -0.02 4.07 16 28 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.07 0.70 6.57 -2.39 -0.02 0.68 16 33 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.06 1.35 7.95 -2.39 -0.02 1.33 16 35 H 0.09 0.54 6.57 -2.38 -0.02 0.53 16 36 H 0.08 0.60 7.57 -2.39 -0.02 0.58 16 37 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 38 H 0.42 6.09 8.25 -92.71 -0.76 5.32 16 39 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.25 16.51 6.41 -92.71 -0.59 15.91 16 42 H 0.04 1.99 7.47 -2.39 -0.02 1.97 16 43 H 0.00 0.05 7.67 -2.39 -0.02 0.03 16 Total: -1.00 -79.64 349.84 2.01 -77.63 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.40 Total: 15.39 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 5.51 Total: -2.95 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -4.33 Total: -112.86 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -1.64 Total: -31.04 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 2.06 Total: 53.83 kcal Total: -79.64 2.01 -77.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115266235.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.348 kcal (2) G-P(sol) polarization free energy of solvation -79.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds