Wall clock time and date at job start Tue Mar 31 2020 05:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42902 * 113.99771 * 2 1 4 4 C 1.52996 * 109.47330 * 179.97438 * 3 2 1 5 5 C 1.52991 * 109.47432 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47135 * 305.00327 * 5 4 3 7 7 C 1.53005 * 109.47198 * 65.00162 * 5 4 3 8 8 C 1.50701 * 109.47314 * 184.99765 * 5 4 3 9 9 O 1.21283 * 119.99870 * 0.02562 * 8 5 4 10 10 N 1.34778 * 120.00204 * 179.97438 * 8 5 4 11 11 C 1.46499 * 120.00087 * 180.02562 * 10 8 5 12 12 H 1.08998 * 115.49088 * 9.62496 * 11 10 8 13 13 C 1.57114 * 118.27237 * 223.46493 * 11 10 8 14 14 H 1.09000 * 121.24576 * 3.77484 * 13 11 10 15 15 C 1.54391 * 118.19972 * 162.01486 * 13 11 10 16 16 N 1.48155 * 104.61624 * 86.20383 * 15 13 11 17 17 C 1.36932 * 127.84099 * 140.41487 * 16 15 13 18 18 H 1.07997 * 120.00056 * 195.61544 * 17 16 15 19 19 C 1.38817 * 119.99827 * 15.61600 * 17 16 15 20 20 N 1.31614 * 120.00197 * 9.10103 * 19 17 16 21 21 Si 1.86804 * 119.99863 * 189.11079 * 19 17 16 22 22 H 1.48494 * 109.47290 * 89.99921 * 21 19 17 23 23 H 1.48504 * 109.46759 * 210.00088 * 21 19 17 24 24 H 1.48499 * 109.46879 * 329.99182 * 21 19 17 25 25 C 1.48150 * 104.32123 * 320.41234 * 16 15 13 26 26 C 1.53000 * 117.44049 * 155.00586 * 11 10 8 27 27 H 1.09006 * 119.54017 * 355.87820 * 26 11 10 28 28 H 1.08998 * 109.46960 * 60.00086 * 1 2 3 29 29 H 1.08997 * 109.46493 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47081 * 299.99758 * 1 2 3 31 31 H 1.09001 * 109.47041 * 59.99470 * 3 2 1 32 32 H 1.08999 * 109.47081 * 300.00147 * 3 2 1 33 33 H 1.09003 * 109.46808 * 59.99353 * 4 3 2 34 34 H 1.09002 * 109.46741 * 300.00119 * 4 3 2 35 35 H 1.09005 * 109.46728 * 299.99808 * 7 5 4 36 36 H 1.08994 * 109.47148 * 60.00010 * 7 5 4 37 37 H 1.09001 * 109.47528 * 180.02562 * 7 5 4 38 38 H 0.97008 * 119.99627 * 0.02562 * 10 8 5 39 39 H 1.08995 * 110.40805 * 327.42138 * 15 13 11 40 40 H 1.09001 * 110.50897 * 205.03264 * 15 13 11 41 41 H 0.96999 * 120.00326 * 179.97438 * 20 19 17 42 42 H 1.09003 * 110.40444 * 280.80193 * 25 16 15 43 43 H 1.08999 * 110.40302 * 158.37160 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 6 4.1577 2.5825 0.0000 6 1 3.7673 3.1536 -0.8423 7 6 3.8078 3.2972 1.3068 8 6 5.6552 2.4657 -0.1231 9 8 6.1736 1.3721 -0.2030 10 7 6.4182 3.5764 -0.1455 11 6 7.8738 3.4629 -0.2658 12 1 8.2491 2.4657 -0.4956 13 6 8.7694 4.3729 0.6497 14 1 8.3279 5.0283 1.4005 15 6 10.2498 3.9799 0.8442 16 7 10.9548 4.5997 -0.3019 17 6 12.1797 5.2119 -0.3033 18 1 12.4695 5.8381 -1.1341 19 6 13.0489 5.0276 0.7633 20 7 12.7768 4.1298 1.6864 21 14 14.6045 6.0542 0.8885 22 1 14.3199 7.2927 1.6566 23 1 15.6589 5.2723 1.5829 24 1 15.0716 6.4133 -0.4746 25 6 10.0340 4.4068 -1.4464 26 6 8.6272 4.6544 -0.8605 27 1 8.0675 5.5114 -1.2352 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8575 0.6436 -0.8891 34 1 3.8567 0.6440 0.8909 35 1 2.7247 3.3817 1.3959 36 1 4.1982 2.7261 2.1491 37 1 4.2507 4.2931 1.3062 38 1 6.0035 4.4511 -0.0820 39 1 10.3618 2.8961 0.8183 40 1 10.6302 4.3783 1.7848 41 1 13.3844 4.0007 2.4315 42 1 10.1124 3.3895 -1.8299 43 1 10.2502 5.1286 -2.2340 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115266236.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:08 Heat of formation + Delta-G solvation = -32.048470 kcal Electronic energy + Delta-G solvation = -21847.108710 eV Core-core repulsion = 18508.051774 eV Total energy + Delta-G solvation = -3339.056936 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.04428 -38.51115 -38.02311 -35.03070 -34.45558 -32.60057 -30.33079 -29.31882 -27.14344 -26.65204 -25.84110 -24.97030 -22.60538 -21.23145 -20.42923 -19.70199 -19.18710 -17.39073 -16.85929 -16.65660 -16.32881 -16.09572 -15.32899 -15.06478 -14.73433 -14.21262 -13.95994 -13.63706 -13.29459 -13.22136 -12.83502 -12.73894 -12.20378 -12.16469 -11.97052 -11.62157 -11.48659 -11.39665 -11.17815 -11.13124 -10.99037 -10.83391 -10.38892 -10.19064 -10.15769 -9.97064 -9.74468 -9.68636 -9.19140 -8.74428 -8.24428 -6.87004 -5.79501 -3.14190 2.63224 3.00689 3.38208 3.43227 3.45626 3.53847 4.25150 4.42020 4.47766 4.61661 4.67209 4.87848 4.90297 5.02332 5.07454 5.09904 5.13645 5.14971 5.31937 5.37184 5.38328 5.47435 5.51049 5.58492 5.72358 5.82981 5.89549 5.95787 6.06792 6.17992 6.27172 6.52473 6.68587 6.81140 6.84650 6.89288 7.37323 7.54405 7.58775 7.71900 8.20597 8.29552 9.10798 9.73475 10.50649 11.34739 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.055137 B = 0.002571 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.699972 B =10889.581150 C =10948.960913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.061 3.939 4 C -0.101 4.101 5 C -0.106 4.106 6 H 0.098 0.902 7 C -0.149 4.149 8 C 0.519 3.481 9 O -0.534 6.534 10 N -0.696 5.696 11 C 0.094 3.906 12 H 0.132 0.868 13 C -0.181 4.181 14 H 0.103 0.897 15 C 0.184 3.816 16 N -0.593 5.593 17 C -0.228 4.228 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.914 5.914 21 Si 0.914 3.086 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.154 3.846 26 C -0.179 4.179 27 H 0.101 0.899 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.398 0.602 39 H 0.026 0.974 40 H 0.091 0.909 41 H 0.255 0.745 42 H 0.027 0.973 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.003 -0.967 -2.412 24.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.139 4.139 5 C -0.128 4.128 6 H 0.116 0.884 7 C -0.206 4.206 8 C 0.305 3.695 9 O -0.410 6.410 10 N -0.344 5.344 11 C -0.012 4.012 12 H 0.150 0.850 13 C -0.203 4.203 14 H 0.121 0.879 15 C 0.058 3.942 16 N -0.317 5.317 17 C -0.356 4.356 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.560 5.560 21 Si 0.744 3.256 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.027 3.973 26 C -0.201 4.201 27 H 0.119 0.881 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.232 0.768 39 H 0.044 0.956 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.045 0.955 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.247 -1.907 -2.346 23.443 hybrid contribution 0.281 1.395 0.143 1.430 sum -22.966 -0.513 -2.203 23.077 Atomic orbital electron populations 1.22740 0.81093 1.02792 0.99881 1.87903 1.19606 1.28067 1.95394 1.22621 0.94162 0.84653 1.00160 1.21281 0.92050 0.95389 1.05172 1.21200 0.92358 0.98517 1.00707 0.88381 1.21875 1.02207 1.00444 0.96073 1.20457 0.88845 0.84257 0.75953 1.90727 1.74790 1.26631 1.48879 1.45340 1.06428 1.08747 1.73879 1.22481 0.77548 0.97305 1.03912 0.84998 1.25377 0.98942 1.02789 0.93142 0.87930 1.21073 0.83437 0.95663 0.94032 1.45191 1.17065 1.66773 1.02660 1.18992 0.89880 1.21300 1.05413 0.90517 1.24920 0.98259 0.98516 0.98632 1.69898 1.37948 1.34247 1.13941 0.86097 0.82450 0.79393 0.77678 1.21522 1.21632 1.20527 1.21142 0.86654 0.98082 0.91384 1.24302 0.98904 0.98585 0.98278 0.88122 0.94119 0.89619 0.94116 0.92999 0.93340 0.90044 0.90169 0.91407 0.91550 0.91838 0.76839 0.95650 0.89088 0.93500 0.95511 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -4.00 10.70 -35.23 -0.38 -4.37 16 3 C 0.06 0.50 5.69 37.16 0.21 0.71 16 4 C -0.10 -1.03 4.40 -26.74 -0.12 -1.15 16 5 C -0.11 -0.97 2.72 -91.77 -0.25 -1.22 16 6 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 7 C -0.15 -1.09 8.84 37.16 0.33 -0.76 16 8 C 0.52 7.07 7.15 -10.98 -0.08 6.99 16 9 O -0.53 -9.70 15.49 5.55 0.09 -9.62 16 10 N -0.70 -9.07 5.50 -51.65 -0.28 -9.36 16 11 C 0.09 1.58 6.16 -65.70 -0.40 1.17 16 12 H 0.13 2.56 7.40 -51.93 -0.38 2.18 16 13 C -0.18 -3.45 7.27 -86.99 -0.63 -4.08 16 14 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 15 C 0.18 4.49 5.73 -2.40 -0.01 4.47 16 16 N -0.59 -15.32 3.38 -168.85 -0.57 -15.89 16 17 C -0.23 -6.36 10.35 -15.06 -0.16 -6.52 16 18 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 19 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 20 N -0.91 -26.99 10.86 55.49 0.60 -26.39 16 21 Si 0.91 21.97 29.56 -169.99 -5.03 16.95 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.15 3.26 7.03 -2.41 -0.02 3.24 16 26 C -0.18 -3.15 6.91 -89.22 -0.62 -3.77 16 27 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.05 0.36 6.57 -51.93 -0.34 0.01 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.97 7.95 -51.93 -0.41 0.55 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.37 6.57 -51.93 -0.34 0.03 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.41 7.57 -51.93 -0.39 0.02 16 38 H 0.40 3.95 8.25 -40.82 -0.34 3.61 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.09 2.46 6.51 -51.93 -0.34 2.13 16 41 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -33.23 350.15 -8.19 -41.42 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.17 Total: 1.84 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -0.73 Total: 0.15 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.25 Total: -51.64 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.29 Total: -13.99 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.23 -8.19 -41.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115266236.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.371 kcal (2) G-P(sol) polarization free energy of solvation -33.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds