Wall clock time and date at job start Tue Mar 31 2020 05:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 N 1.46501 * 109.47135 * 295.00335 * 4 2 1 6 6 C 1.34783 * 119.99675 * 179.97438 * 5 4 2 7 7 O 1.21342 * 120.00506 * 359.97438 * 6 5 4 8 8 C 1.49455 * 119.99738 * 179.97438 * 6 5 4 9 9 O 1.21348 * 120.00003 * 0.02562 * 8 6 5 10 10 N 1.34772 * 120.00320 * 179.97438 * 8 6 5 11 11 C 1.46494 * 120.00365 * 179.97438 * 10 8 6 12 12 C 1.53002 * 109.47345 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47469 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47339 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99742 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99828 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00221 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99667 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47095 * 89.99867 * 18 16 14 20 20 H 1.48496 * 109.46965 * 210.00084 * 18 16 14 21 21 H 1.48505 * 109.47188 * 329.99864 * 18 16 14 22 22 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 23 23 C 1.53002 * 117.50202 * 128.61899 * 22 2 1 24 24 C 1.52995 * 60.00289 * 252.51516 * 23 22 2 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 29 29 H 1.08997 * 109.47756 * 174.99755 * 4 2 1 30 30 H 0.96997 * 120.00359 * 0.02562 * 5 4 2 31 31 H 0.97004 * 119.99332 * 359.97438 * 10 8 6 32 32 H 1.08997 * 109.47417 * 300.00155 * 11 10 8 33 33 H 1.09008 * 109.47020 * 60.00160 * 11 10 8 34 34 H 1.09007 * 109.47055 * 300.00501 * 12 11 10 35 35 H 1.08999 * 109.47029 * 60.00372 * 12 11 10 36 36 H 1.08996 * 109.46883 * 300.00617 * 13 12 11 37 37 H 1.08999 * 109.46883 * 60.00048 * 13 12 11 38 38 H 0.96995 * 119.99872 * 179.97438 * 17 16 14 39 39 H 1.08997 * 115.55368 * 274.33497 * 22 2 1 40 40 H 1.09000 * 117.49728 * 0.02562 * 23 22 2 41 41 H 1.08999 * 117.50138 * 145.02181 * 23 22 2 42 42 H 1.09003 * 117.49858 * 252.51133 * 24 23 22 43 43 H 1.08997 * 117.50463 * 107.48857 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 0.0355 2.4424 6 6 1.9956 -0.4135 3.6660 7 8 2.6252 -1.4446 3.7795 8 6 1.6007 0.3587 4.8832 9 8 0.9707 1.3896 4.7697 10 7 1.9433 -0.0904 6.1068 11 6 1.5567 0.6668 7.2998 12 6 2.0649 -0.0555 8.5492 13 6 1.6606 0.7349 9.7952 14 6 2.1617 0.0238 11.0258 15 1 2.7137 -0.8994 10.9288 16 6 1.9154 0.5518 12.2754 17 7 1.2436 1.6762 12.3935 18 14 2.5359 -0.3301 13.8008 19 1 3.8975 0.1588 14.1357 20 1 1.6191 -0.0585 14.9369 21 1 2.5843 -1.7917 13.5423 22 6 2.0400 -0.7212 -1.2491 23 6 3.0742 0.0051 -2.1116 24 6 1.6358 -0.1495 -2.6095 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6054 -1.7198 1.2952 29 1 3.1263 -0.7995 1.2057 30 1 1.1482 0.8591 2.3518 31 1 2.4460 -0.9151 6.1974 32 1 1.9928 1.6646 7.2540 33 1 0.4705 0.7465 7.3433 34 1 1.6285 -1.0534 8.5948 35 1 3.1511 -0.1357 8.5060 36 1 2.0966 1.7328 9.7497 37 1 0.5744 0.8147 9.8382 38 1 1.0700 2.0474 13.2726 39 1 2.1267 -1.8044 -1.1642 40 1 3.3914 0.9967 -1.7889 41 1 3.8416 -0.6001 -2.5941 42 1 1.4569 -0.8566 -3.4196 43 1 1.0064 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117117723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:54 Heat of formation + Delta-G solvation = -75.504397 kcal Electronic energy + Delta-G solvation = -21038.361545 eV Core-core repulsion = 17697.420219 eV Total energy + Delta-G solvation = -3340.941326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.64848 -38.99652 -38.22102 -35.90239 -35.23397 -33.34595 -32.11235 -31.24494 -27.75878 -26.88595 -24.79091 -23.26774 -22.71933 -22.08593 -20.81472 -20.67263 -19.85719 -18.40229 -16.93036 -16.38597 -16.25556 -16.00002 -15.65867 -15.17968 -14.97347 -14.65910 -14.44627 -14.29966 -13.77706 -13.53170 -13.21276 -12.97442 -12.31246 -12.10387 -11.99079 -11.89328 -11.79294 -11.69179 -11.62078 -11.26797 -10.91445 -10.76441 -10.73340 -10.60563 -10.42565 -9.90326 -9.78203 -9.46606 -9.37381 -9.13352 -8.97888 -8.38096 -6.02846 -4.05820 1.42928 2.34286 3.23589 3.31091 3.31613 3.37445 3.40603 3.65758 4.10684 4.30086 4.42195 4.43749 4.51746 4.60401 4.78768 4.88451 5.00411 5.20068 5.28702 5.33127 5.34346 5.44626 5.47194 5.59341 5.60464 5.67502 5.69117 5.78455 5.88010 6.00625 6.07986 6.27233 6.54019 6.69207 6.91930 6.95130 7.40668 7.61568 7.72911 7.73205 7.95516 8.05473 8.36816 9.00668 9.58513 11.08408 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.057609 B = 0.002097 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.919565 B =13351.281575 C =13620.445457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.073 4.073 3 H 0.080 0.920 4 C 0.124 3.876 5 N -0.703 5.703 6 C 0.508 3.492 7 O -0.521 6.521 8 C 0.500 3.500 9 O -0.527 6.527 10 N -0.691 5.691 11 C 0.113 3.887 12 C -0.123 4.123 13 C 0.024 3.976 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.148 4.148 23 C -0.180 4.180 24 C -0.176 4.176 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.412 0.588 31 H 0.411 0.589 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.261 0.739 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.451 -3.567 -29.111 29.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 H 0.098 0.902 4 C 0.001 3.999 5 N -0.358 5.358 6 C 0.289 3.711 7 O -0.396 6.396 8 C 0.280 3.720 9 O -0.404 6.404 10 N -0.343 5.343 11 C -0.008 4.008 12 C -0.161 4.161 13 C -0.014 4.014 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.166 4.166 23 C -0.217 4.217 24 C -0.213 4.213 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.249 0.751 31 H 0.247 0.753 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.382 -3.450 -28.954 29.161 hybrid contribution 0.332 -0.420 0.875 1.026 sum 0.713 -3.870 -28.078 28.353 Atomic orbital electron populations 1.21869 0.94079 1.02593 1.02131 1.20961 0.96548 0.99503 0.92191 0.90199 1.21489 1.00625 0.95375 0.82404 1.45770 1.56762 1.28189 1.05038 1.20335 0.80350 0.85563 0.84894 1.90760 1.38534 1.23599 1.86706 1.20019 0.81381 0.85783 0.84864 1.90756 1.39304 1.23764 1.86617 1.46070 1.55062 1.27756 1.05390 1.21846 1.00660 0.95625 0.82718 1.21930 1.00414 0.99800 0.93941 1.19034 0.97101 0.95278 0.89942 1.21203 1.35357 1.08520 0.91023 0.92562 1.25030 0.95202 0.95029 0.99216 1.69961 1.40183 1.19408 1.23732 0.86568 0.78642 0.80013 0.82617 1.20655 1.21209 1.19873 1.22181 1.04053 0.99402 0.90980 1.23055 0.92584 1.02102 1.03921 1.22943 0.98141 1.03318 0.96899 0.92129 0.92080 0.92247 0.90786 0.90739 0.75091 0.75301 0.91087 0.91088 0.92419 0.92421 0.96197 0.96179 0.92924 0.87388 0.88666 0.88740 0.88749 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.91 37.16 0.33 -0.54 16 2 C -0.07 -0.44 2.58 -90.63 -0.23 -0.67 16 3 H 0.08 0.47 7.90 -51.93 -0.41 0.06 16 4 C 0.12 0.99 5.05 -4.04 -0.02 0.97 16 5 N -0.70 -6.99 5.28 -60.73 -0.32 -7.31 16 6 C 0.51 6.67 7.89 -11.58 -0.09 6.58 16 7 O -0.52 -7.84 16.48 5.50 0.09 -7.75 16 8 C 0.50 7.47 7.89 -11.58 -0.09 7.38 16 9 O -0.53 -8.91 16.48 5.50 0.09 -8.82 16 10 N -0.69 -10.41 5.55 -60.73 -0.34 -10.75 16 11 C 0.11 1.95 5.67 -4.04 -0.02 1.93 16 12 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 13 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 14 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 18 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.15 -0.81 5.15 -90.62 -0.47 -1.28 16 23 C -0.18 -0.94 10.18 -26.73 -0.27 -1.22 16 24 C -0.18 -0.87 9.73 -26.73 -0.26 -1.13 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.31 7.29 -51.93 -0.38 -0.07 16 27 H 0.06 0.37 7.18 -51.93 -0.37 0.00 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.41 3.69 7.12 -40.82 -0.29 3.40 16 31 H 0.41 5.67 7.94 -40.82 -0.32 5.34 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.26 8.14 -51.92 -0.42 0.83 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.11 0.58 8.11 -51.93 -0.42 0.16 16 40 H 0.09 0.49 8.05 -51.93 -0.42 0.08 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.45 7.61 -51.93 -0.40 0.05 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -31.71 362.60 -8.32 -40.03 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.20 Total: 1.97 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.82 Total: -3.39 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.08 Total: -43.99 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.18 Total: -16.57 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.71 -8.32 -40.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117117723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.474 kcal (2) G-P(sol) polarization free energy of solvation -31.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds