Wall clock time and date at job start Tue Mar 31 2020 05:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47393 * 2 1 4 4 C 1.52996 * 109.47341 * 240.00105 * 2 1 3 5 5 N 1.46500 * 109.47431 * 65.00056 * 4 2 1 6 6 C 1.34775 * 120.00509 * 180.02562 * 5 4 2 7 7 O 1.21352 * 119.99898 * 0.02562 * 6 5 4 8 8 C 1.49449 * 120.00313 * 179.97438 * 6 5 4 9 9 O 1.21352 * 119.99789 * 0.02562 * 8 6 5 10 10 N 1.34779 * 119.99928 * 179.97438 * 8 6 5 11 11 C 1.46498 * 119.99620 * 179.97438 * 10 8 6 12 12 C 1.52996 * 109.46928 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47391 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47470 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00018 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00004 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00026 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00035 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47071 * 89.99613 * 18 16 14 20 20 H 1.48506 * 109.46664 * 209.99320 * 18 16 14 21 21 H 1.48492 * 109.47049 * 329.99150 * 18 16 14 22 22 C 1.52996 * 109.47177 * 119.99918 * 2 1 3 23 23 C 1.53000 * 117.49997 * 300.00307 * 22 2 1 24 24 C 1.53002 * 60.02940 * 252.49592 * 23 22 2 25 25 H 1.08995 * 109.47239 * 300.00014 * 1 2 3 26 26 H 1.09006 * 109.46923 * 60.00194 * 1 2 3 27 27 H 1.08998 * 109.47393 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47563 * 185.00383 * 4 2 1 29 29 H 1.09003 * 109.47451 * 305.00142 * 4 2 1 30 30 H 0.97001 * 119.99830 * 359.97438 * 5 4 2 31 31 H 0.97001 * 120.00047 * 359.97438 * 10 8 6 32 32 H 1.08998 * 109.47460 * 300.00551 * 11 10 8 33 33 H 1.09007 * 109.47109 * 60.00212 * 11 10 8 34 34 H 1.08998 * 109.47563 * 300.00565 * 12 11 10 35 35 H 1.09003 * 109.47451 * 60.00323 * 12 11 10 36 36 H 1.09005 * 109.47140 * 300.00256 * 13 12 11 37 37 H 1.09000 * 109.47411 * 59.99962 * 13 12 11 38 38 H 0.96999 * 120.00229 * 180.02562 * 17 16 14 39 39 H 1.09008 * 115.56055 * 85.68820 * 22 2 1 40 40 H 1.09002 * 117.49833 * 359.97438 * 23 22 2 41 41 H 1.09002 * 117.49953 * 144.99738 * 23 22 2 42 42 H 1.09000 * 117.49996 * 107.50493 * 24 23 22 43 43 H 1.08999 * 117.49664 * 252.51862 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6525 0.0354 -2.4424 6 6 1.9956 -0.4135 -3.6660 7 8 2.6252 -1.4447 -3.7794 8 6 1.5998 0.3580 -4.8832 9 8 0.9698 1.3890 -4.7698 10 7 1.9435 -0.0907 -6.1067 11 6 1.5550 0.6654 -7.2999 12 6 2.0658 -0.0554 -8.5490 13 6 1.6606 0.7345 -9.7952 14 6 2.1632 0.0243 -11.0256 15 1 2.7159 -0.8985 -10.9286 16 6 1.9165 0.5519 -12.2753 17 7 2.3546 -0.0681 -13.3491 18 14 0.9598 2.1476 -12.4432 19 1 1.9023 3.2949 -12.4178 20 1 0.2164 2.1460 -13.7288 21 1 0.0002 2.2703 -11.3166 22 6 2.0399 -0.7212 1.2492 23 6 1.6356 -0.1495 2.6096 24 6 3.0743 0.0053 2.1125 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 3.1263 -0.7995 -1.2056 29 1 1.6054 -1.7198 -1.2952 30 1 1.1483 0.8591 -2.3518 31 1 2.4480 -0.9142 -6.1973 32 1 0.4686 0.7428 -7.3432 33 1 1.9888 1.6643 -7.2543 34 1 3.1521 -0.1324 -8.5054 35 1 1.6323 -1.0544 -8.5949 36 1 0.5742 0.8119 -9.8390 37 1 2.0944 1.7334 -9.7492 38 1 2.1814 0.3033 -14.2283 39 1 2.1270 -1.8045 1.1643 40 1 1.0066 0.7407 2.6146 41 1 1.4564 -0.8566 3.4195 42 1 3.3916 0.9972 1.7905 43 1 3.8415 -0.6001 2.5951 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117117724.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:56 Heat of formation + Delta-G solvation = -71.764500 kcal Electronic energy + Delta-G solvation = -21090.016775 eV Core-core repulsion = 17749.237624 eV Total energy + Delta-G solvation = -3340.779152 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.70283 -39.03943 -38.26424 -35.98494 -35.30903 -33.35257 -32.14605 -31.48174 -27.97189 -27.15358 -24.85942 -23.19568 -22.73738 -22.03767 -20.85620 -20.62055 -19.85990 -18.48933 -16.98889 -16.73367 -16.31105 -16.04986 -15.73921 -15.25641 -15.10007 -14.71241 -14.37958 -14.20217 -13.74539 -13.62379 -13.24087 -13.01362 -12.72940 -12.14856 -12.07479 -12.00766 -11.97028 -11.75962 -11.64666 -11.29574 -11.11749 -10.92425 -10.75793 -10.44584 -10.17951 -9.98355 -9.79017 -9.52264 -9.50250 -9.24341 -9.07349 -8.56560 -6.06881 -4.05893 1.37245 2.28617 3.17612 3.29380 3.30187 3.37838 3.41322 3.59712 4.08100 4.27403 4.39966 4.43224 4.45656 4.57727 4.76276 4.85968 4.97987 5.18159 5.26043 5.26767 5.31721 5.42222 5.43500 5.44955 5.56383 5.57788 5.65644 5.75859 5.85385 5.92699 5.96940 6.15595 6.38492 6.53465 6.73571 6.85895 7.19685 7.33034 7.33747 7.67346 7.74427 7.98284 8.49495 8.97198 9.54885 11.06311 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.051621 B = 0.002203 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.288156 B =12705.483074 C =13024.019062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.073 4.073 3 H 0.080 0.920 4 C 0.124 3.876 5 N -0.703 5.703 6 C 0.508 3.492 7 O -0.519 6.519 8 C 0.501 3.499 9 O -0.528 6.528 10 N -0.691 5.691 11 C 0.111 3.889 12 C -0.115 4.115 13 C -0.011 4.011 14 C -0.523 4.523 15 H 0.073 0.927 16 C 0.066 3.934 17 N -0.902 5.902 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.148 4.148 23 C -0.176 4.176 24 C -0.180 4.180 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.412 0.588 31 H 0.413 0.587 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.019 0.981 37 H 0.015 0.985 38 H 0.263 0.737 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.117 0.396 31.603 31.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 H 0.098 0.902 4 C 0.001 3.999 5 N -0.357 5.357 6 C 0.288 3.712 7 O -0.394 6.394 8 C 0.281 3.719 9 O -0.405 6.405 10 N -0.343 5.343 11 C -0.011 4.011 12 C -0.153 4.153 13 C -0.048 4.048 14 C -0.561 4.561 15 H 0.091 0.909 16 C -0.135 4.135 17 N -0.541 5.541 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.166 4.166 23 C -0.213 4.213 24 C -0.217 4.217 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.249 0.751 31 H 0.249 0.751 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.038 0.962 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.109 0.393 31.380 31.454 hybrid contribution -0.420 0.785 -0.238 0.921 sum -2.529 1.178 31.143 31.267 Atomic orbital electron populations 1.21867 0.94087 1.02607 1.02110 1.20958 0.96537 0.99496 0.92202 0.90212 1.21495 1.00660 0.95382 0.82367 1.45765 1.56745 1.28182 1.05044 1.20297 0.80427 0.85584 0.84867 1.90772 1.38462 1.23526 1.86681 1.20029 0.81282 0.85740 0.84868 1.90753 1.39355 1.23756 1.86646 1.46019 1.55024 1.27949 1.05297 1.21848 1.00596 0.95676 0.82965 1.21743 1.00988 0.99792 0.92816 1.19506 0.96786 0.95658 0.92900 1.21092 1.35810 1.10005 0.89174 0.90932 1.25034 0.95354 0.97271 0.95846 1.69912 1.46442 1.39682 0.98047 0.86771 0.80735 0.84113 0.77634 1.20247 1.21362 1.18921 1.22193 1.04059 0.99411 0.90961 1.22945 0.98138 1.03309 0.96905 1.23068 0.92588 1.02092 1.03921 0.92081 0.92277 0.92111 0.90702 0.90749 0.75114 0.75121 0.91100 0.91112 0.91804 0.91779 0.96240 0.96667 0.92682 0.87367 0.88674 0.88735 0.88670 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.91 37.15 0.33 -0.49 16 2 C -0.07 -0.42 2.58 -90.63 -0.23 -0.65 16 3 H 0.08 0.44 7.90 -51.93 -0.41 0.03 16 4 C 0.12 0.96 5.05 -4.04 -0.02 0.94 16 5 N -0.70 -6.71 5.28 -60.73 -0.32 -7.03 16 6 C 0.51 6.44 7.89 -11.59 -0.09 6.35 16 7 O -0.52 -7.64 16.48 5.49 0.09 -7.55 16 8 C 0.50 7.16 7.89 -11.58 -0.09 7.07 16 9 O -0.53 -8.51 16.48 5.49 0.09 -8.42 16 10 N -0.69 -9.91 5.55 -60.73 -0.34 -10.24 16 11 C 0.11 1.79 5.67 -4.04 -0.02 1.76 16 12 C -0.12 -2.14 5.27 -26.73 -0.14 -2.28 16 13 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 14 C -0.52 -14.68 9.66 -34.44 -0.33 -15.02 16 15 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 16 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 18 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 22 C -0.15 -0.78 5.15 -90.59 -0.47 -1.25 16 23 C -0.18 -0.84 9.73 -26.73 -0.26 -1.10 16 24 C -0.18 -0.91 10.18 -26.69 -0.27 -1.19 16 25 H 0.06 0.30 7.29 -51.93 -0.38 -0.08 16 26 H 0.06 0.35 7.18 -51.93 -0.37 -0.02 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.41 3.51 7.12 -40.82 -0.29 3.22 16 31 H 0.41 5.45 7.94 -40.82 -0.32 5.13 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 37 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 39 H 0.11 0.56 8.11 -51.92 -0.42 0.14 16 40 H 0.09 0.43 7.61 -51.93 -0.40 0.03 16 41 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.48 8.05 -51.93 -0.42 0.06 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -32.24 359.01 -7.94 -40.18 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.17 Total: 2.05 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -1.81 Total: -4.39 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.12 Total: -44.19 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.18 Total: -15.97 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.24 -7.94 -40.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117117724.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.583 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds