Wall clock time and date at job start Tue Mar 31 2020 05:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47393 * 2 1 4 4 C 1.52996 * 109.47341 * 240.00105 * 2 1 3 5 5 N 1.46500 * 109.47431 * 65.00056 * 4 2 1 6 6 C 1.34775 * 120.00509 * 180.02562 * 5 4 2 7 7 O 1.21352 * 119.99898 * 0.02562 * 6 5 4 8 8 C 1.49449 * 120.00313 * 179.97438 * 6 5 4 9 9 O 1.21352 * 119.99789 * 0.02562 * 8 6 5 10 10 N 1.34779 * 119.99928 * 179.97438 * 8 6 5 11 11 C 1.46498 * 119.99620 * 179.97438 * 10 8 6 12 12 C 1.52996 * 109.46928 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47391 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47470 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00018 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00004 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00026 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00035 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47071 * 89.99613 * 18 16 14 20 20 H 1.48506 * 109.46664 * 209.99320 * 18 16 14 21 21 H 1.48492 * 109.47049 * 329.99150 * 18 16 14 22 22 C 1.52996 * 109.47177 * 119.99918 * 2 1 3 23 23 C 1.53000 * 117.49997 * 300.00307 * 22 2 1 24 24 C 1.53002 * 60.02940 * 252.49592 * 23 22 2 25 25 H 1.08995 * 109.47239 * 300.00014 * 1 2 3 26 26 H 1.09006 * 109.46923 * 60.00194 * 1 2 3 27 27 H 1.08998 * 109.47393 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47563 * 185.00383 * 4 2 1 29 29 H 1.09003 * 109.47451 * 305.00142 * 4 2 1 30 30 H 0.97001 * 119.99830 * 359.97438 * 5 4 2 31 31 H 0.97001 * 120.00047 * 359.97438 * 10 8 6 32 32 H 1.08998 * 109.47460 * 300.00551 * 11 10 8 33 33 H 1.09007 * 109.47109 * 60.00212 * 11 10 8 34 34 H 1.08998 * 109.47563 * 300.00565 * 12 11 10 35 35 H 1.09003 * 109.47451 * 60.00323 * 12 11 10 36 36 H 1.09005 * 109.47140 * 300.00256 * 13 12 11 37 37 H 1.09000 * 109.47411 * 59.99962 * 13 12 11 38 38 H 0.96999 * 120.00229 * 180.02562 * 17 16 14 39 39 H 1.09008 * 115.56055 * 85.68820 * 22 2 1 40 40 H 1.09002 * 117.49833 * 359.97438 * 23 22 2 41 41 H 1.09002 * 117.49953 * 144.99738 * 23 22 2 42 42 H 1.09000 * 117.49996 * 107.50493 * 24 23 22 43 43 H 1.08999 * 117.49664 * 252.51862 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6525 0.0354 -2.4424 6 6 1.9956 -0.4135 -3.6660 7 8 2.6252 -1.4447 -3.7794 8 6 1.5998 0.3580 -4.8832 9 8 0.9698 1.3890 -4.7698 10 7 1.9435 -0.0907 -6.1067 11 6 1.5550 0.6654 -7.2999 12 6 2.0658 -0.0554 -8.5490 13 6 1.6606 0.7345 -9.7952 14 6 2.1632 0.0243 -11.0256 15 1 2.7159 -0.8985 -10.9286 16 6 1.9165 0.5519 -12.2753 17 7 2.3546 -0.0681 -13.3491 18 14 0.9598 2.1476 -12.4432 19 1 1.9023 3.2949 -12.4178 20 1 0.2164 2.1460 -13.7288 21 1 0.0002 2.2703 -11.3166 22 6 2.0399 -0.7212 1.2492 23 6 1.6356 -0.1495 2.6096 24 6 3.0743 0.0053 2.1125 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 3.1263 -0.7995 -1.2056 29 1 1.6054 -1.7198 -1.2952 30 1 1.1483 0.8591 -2.3518 31 1 2.4480 -0.9142 -6.1973 32 1 0.4686 0.7428 -7.3432 33 1 1.9888 1.6643 -7.2543 34 1 3.1521 -0.1324 -8.5054 35 1 1.6323 -1.0544 -8.5949 36 1 0.5742 0.8119 -9.8390 37 1 2.0944 1.7334 -9.7492 38 1 2.1814 0.3033 -14.2283 39 1 2.1270 -1.8045 1.1643 40 1 1.0066 0.7407 2.6146 41 1 1.4564 -0.8566 3.4195 42 1 3.3916 0.9972 1.7905 43 1 3.8415 -0.6001 2.5951 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117117724.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:56 Heat of formation + Delta-G solvation = -93.867485 kcal Electronic energy + Delta-G solvation = -21090.975233 eV Core-core repulsion = 17749.237624 eV Total energy + Delta-G solvation = -3341.737609 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.74897 -39.89473 -38.99494 -37.23913 -36.23147 -35.14415 -33.31253 -32.76905 -29.42622 -28.06340 -25.97970 -24.35447 -23.10432 -23.05714 -22.27726 -21.55841 -20.70323 -19.55922 -18.86079 -17.97724 -17.28373 -16.79284 -16.72172 -16.32757 -16.23848 -15.87503 -15.55175 -15.17114 -14.84018 -14.76958 -14.60754 -13.81932 -13.79015 -13.65393 -13.53722 -12.91759 -12.73905 -12.69511 -12.62533 -12.42083 -12.08709 -11.90912 -11.78357 -11.73929 -11.60489 -11.33439 -11.17730 -10.86123 -10.75297 -10.70418 -10.36171 -10.26204 -8.28183 -6.32696 0.30011 1.28395 1.38674 1.40312 1.52111 2.09973 2.37696 2.60507 2.91835 3.07487 3.39977 3.59625 3.84085 3.97098 4.01921 4.15083 4.17472 4.28602 4.40299 4.47933 4.53778 4.69953 4.81104 4.81636 4.83885 4.86451 4.93982 5.01867 5.03791 5.07684 5.17344 5.21969 5.29758 5.34330 5.43837 5.46480 5.55513 5.65207 5.88670 6.28228 6.31110 6.68577 6.75701 6.89834 7.32002 8.88340 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.051621 B = 0.002203 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.288156 B =12705.483074 C =13024.019062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.064 4.064 3 H 0.084 0.916 4 C 0.123 3.877 5 N -0.687 5.687 6 C 0.511 3.489 7 O -0.543 6.543 8 C 0.503 3.497 9 O -0.546 6.546 10 N -0.689 5.689 11 C 0.124 3.876 12 C -0.105 4.105 13 C -0.011 4.011 14 C -0.533 4.533 15 H 0.034 0.966 16 C 0.002 3.998 17 N -0.952 5.952 18 Si 0.951 3.049 19 H -0.267 1.267 20 H -0.286 1.286 21 H -0.244 1.244 22 C -0.153 4.153 23 C -0.172 4.172 24 C -0.184 4.184 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.419 0.581 31 H 0.418 0.582 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.025 0.975 37 H 0.024 0.976 38 H 0.266 0.734 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 1.834 33.688 33.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.082 4.082 3 H 0.103 0.897 4 C 0.001 3.999 5 N -0.340 5.340 6 C 0.291 3.709 7 O -0.420 6.420 8 C 0.284 3.716 9 O -0.424 6.424 10 N -0.341 5.341 11 C 0.001 3.999 12 C -0.143 4.143 13 C -0.049 4.049 14 C -0.571 4.571 15 H 0.052 0.948 16 C -0.195 4.195 17 N -0.592 5.592 18 Si 0.774 3.226 19 H -0.192 1.192 20 H -0.212 1.212 21 H -0.167 1.167 22 C -0.172 4.172 23 C -0.209 4.209 24 C -0.221 4.221 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.257 0.743 31 H 0.255 0.745 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.075 0.925 39 H 0.126 0.874 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.114 0.886 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.102 1.834 33.517 33.711 hybrid contribution -0.063 0.256 -0.837 0.878 sum -3.165 2.090 32.680 32.899 Atomic orbital electron populations 1.21867 0.93803 1.02548 1.02385 1.20881 0.96643 0.99443 0.91279 0.89748 1.21633 1.00573 0.95402 0.82296 1.45775 1.55456 1.28157 1.04602 1.19997 0.80530 0.85176 0.85157 1.90770 1.39888 1.24462 1.86919 1.20267 0.80687 0.85495 0.85172 1.90744 1.40156 1.24541 1.86934 1.45902 1.55086 1.28056 1.05042 1.21553 1.00536 0.95406 0.82390 1.21524 1.01041 0.99394 0.92330 1.19463 0.96884 0.96017 0.92528 1.21481 1.35073 1.09051 0.91504 0.94751 1.26040 0.96626 1.01395 0.95422 1.70070 1.48427 1.41955 0.98779 0.85649 0.79594 0.79155 0.78206 1.19187 1.21209 1.16685 1.22180 1.04574 0.99430 0.91015 1.23006 0.97883 1.03462 0.96535 1.23130 0.92900 1.02154 1.03933 0.91174 0.92642 0.92350 0.90971 0.90921 0.74311 0.74465 0.90895 0.90843 0.91829 0.91841 0.95636 0.95744 0.92540 0.87365 0.88260 0.88179 0.88601 0.88433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.91 71.98 0.64 -0.73 16 2 C -0.06 -0.61 2.58 -10.80 -0.03 -0.64 16 3 H 0.08 0.77 7.90 -2.39 -0.02 0.75 16 4 C 0.12 1.73 5.05 86.38 0.44 2.17 16 5 N -0.69 -12.06 5.28 -464.42 -2.45 -14.51 16 6 C 0.51 12.32 7.89 87.27 0.69 13.01 16 7 O -0.54 -15.46 16.48 -3.25 -0.05 -15.51 16 8 C 0.50 13.63 7.89 87.27 0.69 14.32 16 9 O -0.55 -16.62 16.48 -3.25 -0.05 -16.67 16 10 N -0.69 -18.74 5.55 -464.41 -2.58 -21.32 16 11 C 0.12 3.74 5.67 86.38 0.49 4.23 16 12 C -0.10 -3.77 5.27 30.59 0.16 -3.61 16 13 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 14 C -0.53 -30.28 9.66 25.60 0.25 -30.03 16 15 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 16 C 0.00 0.11 5.47 84.65 0.46 0.57 16 17 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 18 Si 0.95 43.85 27.47 68.60 1.88 45.73 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 21 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 22 C -0.15 -1.38 5.15 -10.77 -0.06 -1.43 16 23 C -0.17 -1.32 9.73 30.60 0.30 -1.03 16 24 C -0.18 -1.59 10.18 30.62 0.31 -1.27 16 25 H 0.07 0.53 7.29 -2.39 -0.02 0.52 16 26 H 0.05 0.56 7.18 -2.38 -0.02 0.54 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.42 6.38 7.12 -92.71 -0.66 5.72 16 31 H 0.42 10.58 7.94 -92.71 -0.74 9.85 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.06 2.27 8.14 -2.39 -0.02 2.26 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.03 1.11 7.20 -2.38 -0.02 1.10 16 37 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 38 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 39 H 0.11 0.98 8.11 -2.38 -0.02 0.96 16 40 H 0.10 0.69 7.61 -2.39 -0.02 0.67 16 41 H 0.10 0.66 8.14 -2.39 -0.02 0.65 16 42 H 0.10 0.81 8.05 -2.39 -0.02 0.79 16 43 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -68.87 359.01 1.06 -67.81 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -0.45 Total: 18.67 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 4.46 Total: -4.83 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -4.73 Total: -95.20 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.11 Total: -32.18 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.73 kcal Total: -68.87 1.06 -67.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117117724.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.062 kcal (2) G-P(sol) polarization free energy of solvation -68.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds