Wall clock time and date at job start Tue Mar 31 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50696 * 120.00449 * 2 1 4 4 C 1.52999 * 109.47061 * 294.99928 * 3 2 1 5 5 C 1.53003 * 109.47095 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47023 * 180.02562 * 5 4 3 7 7 H 1.08006 * 120.00349 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00243 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99690 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00253 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46477 * 60.00669 * 10 8 6 12 12 H 1.48503 * 109.47064 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47604 * 300.00939 * 10 8 6 14 14 N 1.28018 * 119.99881 * 179.97438 * 2 1 3 15 15 N 1.40104 * 119.99730 * 0.02562 * 14 2 1 16 16 C 1.34773 * 119.99692 * 179.97438 * 15 14 2 17 17 O 1.21305 * 120.00274 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99991 * 180.02562 * 16 15 14 19 19 C 1.53175 * 109.54351 * 299.55662 * 18 16 15 20 20 C 1.53094 * 109.16661 * 183.15290 * 19 18 16 21 21 O 1.42898 * 109.41211 * 57.60371 * 20 19 18 22 22 C 1.42897 * 114.10001 * 298.84343 * 21 20 19 23 23 C 1.53089 * 109.41656 * 61.16248 * 22 21 20 24 24 H 1.09000 * 109.46962 * 270.00359 * 1 2 3 25 25 H 1.09001 * 109.47067 * 29.99845 * 1 2 3 26 26 H 1.08998 * 109.47430 * 150.00190 * 1 2 3 27 27 H 1.09008 * 109.47461 * 54.99809 * 3 2 1 28 28 H 1.08999 * 109.47214 * 174.99946 * 3 2 1 29 29 H 1.08996 * 109.47205 * 299.99906 * 4 3 2 30 30 H 1.08999 * 109.47092 * 59.99943 * 4 3 2 31 31 H 1.09003 * 109.47187 * 299.99658 * 5 4 3 32 32 H 1.08999 * 109.47096 * 60.00070 * 5 4 3 33 33 H 0.97002 * 119.99715 * 179.97438 * 9 8 6 34 34 H 0.97002 * 120.00231 * 359.97438 * 15 14 2 35 35 H 1.09004 * 109.61503 * 59.77219 * 18 16 15 36 36 H 1.09004 * 109.52259 * 303.05556 * 19 18 16 37 37 H 1.09006 * 109.52330 * 63.24389 * 19 18 16 38 38 H 1.09006 * 109.47665 * 297.62062 * 20 19 18 39 39 H 1.08993 * 109.47955 * 177.58818 * 20 19 18 40 40 H 1.09002 * 109.48425 * 301.17758 * 22 21 20 41 41 H 1.09001 * 109.49443 * 181.15303 * 22 21 20 42 42 H 1.08997 * 109.52675 * 182.48845 * 23 22 21 43 43 H 1.08995 * 109.52428 * 62.29514 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 1.9877 2.0515 -1.3073 5 6 2.7523 3.3768 -1.3071 6 6 2.4830 4.1123 -2.5945 7 1 1.8313 3.6782 -3.3384 8 6 3.0677 5.3400 -2.8224 9 7 3.8609 5.8689 -1.9164 10 14 2.7344 6.2514 -4.4186 11 1 1.2788 6.5191 -4.5410 12 1 3.4764 7.5377 -4.4183 13 1 3.1833 5.4217 -5.5655 14 7 2.1470 -1.1087 0.0005 15 7 1.4464 -2.3220 0.0005 16 6 2.1203 -3.4892 0.0005 17 8 3.3333 -3.4892 0.0000 18 6 1.3668 -4.7942 -0.0001 19 6 0.4934 -4.8822 1.2552 20 6 -0.2071 -6.2431 1.2858 21 8 0.7729 -7.2826 1.2527 22 6 1.5879 -7.2790 0.0790 23 6 2.3606 -5.9598 0.0000 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.9318 1.9145 0.8418 28 1 3.3288 1.1077 0.0896 29 1 2.3164 1.4421 -2.1491 30 1 0.9194 2.2488 -1.3969 31 1 2.4230 3.9860 -0.4653 32 1 3.8206 3.1799 -1.2173 33 1 4.2725 6.7324 -2.0769 34 1 0.4764 -2.3219 0.0005 35 1 0.7365 -4.8525 -0.8875 36 1 1.1181 -4.7742 2.1419 37 1 -0.2534 -4.0884 1.2358 38 1 -0.8628 -6.3339 0.4197 39 1 -0.7966 -6.3281 2.1986 40 1 0.9558 -7.3834 -0.8029 41 1 2.2915 -8.1104 0.1222 42 1 2.9491 -5.9367 -0.9171 43 1 3.0230 -5.8736 0.8612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119362069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:02 Heat of formation + Delta-G solvation = -71.787571 kcal Electronic energy + Delta-G solvation = -21552.832117 eV Core-core repulsion = 18212.051965 eV Total energy + Delta-G solvation = -3340.780152 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.54888 -38.96773 -37.59094 -34.72012 -34.13722 -32.91325 -31.61884 -31.12402 -28.68095 -27.42240 -26.10720 -24.01949 -23.66452 -21.70724 -20.44233 -20.20931 -19.42702 -17.60915 -16.54853 -16.43014 -16.35214 -16.09065 -15.55249 -15.20137 -14.66450 -14.44147 -14.26062 -14.13026 -13.80050 -13.67785 -13.40693 -12.83510 -12.42798 -12.09209 -11.99258 -11.82484 -11.76713 -11.56301 -11.36286 -11.21014 -10.90768 -10.81577 -10.71445 -10.57915 -10.27498 -10.04014 -9.78946 -9.68842 -9.38010 -9.13867 -8.62533 -8.34170 -5.99483 -4.01993 1.86182 2.45952 2.77125 3.33262 3.37998 3.40146 3.43880 4.09844 4.18866 4.29041 4.45763 4.50167 4.64663 4.71985 4.78953 4.91512 4.97870 5.04000 5.09270 5.11800 5.22616 5.31243 5.36165 5.36313 5.52459 5.64228 5.81237 5.83014 5.86693 5.97342 6.01926 6.42609 6.65745 6.73653 6.80973 7.04760 7.09271 7.57200 7.67193 7.81808 8.00289 8.40909 8.42345 9.04711 9.61907 11.11765 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039920 B = 0.002378 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.238738 B =11770.534352 C =11917.301515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.118 3.882 3 C -0.066 4.066 4 C -0.102 4.102 5 C 0.021 3.979 6 C -0.522 4.522 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.252 5.252 15 N -0.590 5.590 16 C 0.533 3.467 17 O -0.504 6.504 18 C -0.104 4.104 19 C -0.150 4.150 20 C 0.063 3.937 21 O -0.382 6.382 22 C 0.061 3.939 23 C -0.137 4.137 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.261 0.739 34 H 0.380 0.620 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.099 0.901 40 H 0.052 0.948 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.710 -23.789 6.425 27.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.076 4.076 3 C -0.106 4.106 4 C -0.141 4.141 5 C -0.016 4.016 6 C -0.560 4.560 7 H 0.072 0.928 8 C -0.145 4.145 9 N -0.534 5.534 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.056 5.056 15 N -0.333 5.333 16 C 0.319 3.681 17 O -0.376 6.376 18 C -0.127 4.127 19 C -0.188 4.188 20 C -0.013 4.013 21 O -0.301 6.301 22 C -0.016 4.016 23 C -0.175 4.175 24 H 0.100 0.900 25 H 0.113 0.887 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.219 0.781 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.118 0.882 42 H 0.102 0.898 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.838 -24.346 6.615 27.079 hybrid contribution -1.558 1.149 -1.187 2.271 sum -11.396 -23.197 5.428 26.409 Atomic orbital electron populations 1.21409 0.93284 1.04082 1.03358 1.25506 0.94437 0.94411 0.93228 1.20713 1.00083 0.88678 1.01129 1.21633 1.00649 0.98379 0.93462 1.19104 0.95447 0.89921 0.97125 1.21199 1.28515 1.03330 1.02946 0.92796 1.25023 0.95195 0.97566 0.96676 1.69955 1.31197 1.17991 1.34260 0.86666 0.78292 0.79036 0.84039 1.20279 1.21289 1.20272 1.74711 1.24140 0.91010 1.15753 1.47068 1.08315 1.03711 1.74206 1.20420 0.88276 0.83487 0.75954 1.90729 1.13748 1.86922 1.46203 1.21396 0.98251 0.92545 1.00526 1.22246 0.99547 0.99192 0.97799 1.22568 0.90264 0.85911 1.02604 1.87958 1.48809 1.51243 1.42045 1.22647 0.93571 0.97511 0.87835 1.22050 0.97746 0.92749 1.04948 0.89960 0.88746 0.92167 0.89653 0.90023 0.93123 0.92981 0.96368 0.96327 0.92929 0.78072 0.88156 0.90032 0.90406 0.92795 0.88334 0.92944 0.88236 0.89759 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.46 36.00 0.34 -1.31 16 2 C 0.12 1.69 6.55 -78.91 -0.52 1.17 16 3 C -0.07 -1.09 5.60 -27.89 -0.16 -1.24 16 4 C -0.10 -2.00 5.03 -26.73 -0.13 -2.14 16 5 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 6 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 7 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 10 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 N -0.25 -4.09 10.93 35.60 0.39 -3.70 16 15 N -0.59 -7.51 6.00 31.22 0.19 -7.32 16 16 C 0.53 7.06 7.27 -10.99 -0.08 6.98 16 17 O -0.50 -9.08 16.30 5.54 0.09 -8.99 16 18 C -0.10 -0.88 2.61 -91.59 -0.24 -1.12 16 19 C -0.15 -1.01 5.30 -26.59 -0.14 -1.15 16 20 C 0.06 0.38 6.84 37.21 0.25 0.63 16 21 O -0.38 -3.22 10.76 -35.23 -0.38 -3.60 16 22 C 0.06 0.42 6.84 37.20 0.25 0.67 16 23 C -0.14 -1.19 4.73 -26.59 -0.13 -1.31 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 0.98 6.91 -51.93 -0.36 0.62 16 26 H 0.06 0.51 6.31 -51.93 -0.33 0.18 16 27 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 28 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.94 7.01 -51.93 -0.36 0.58 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.38 3.43 5.90 -182.59 -1.08 2.35 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.38 7.70 -51.93 -0.40 -0.02 16 38 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.87 8.02 -51.93 -0.42 0.46 16 LS Contribution 351.65 15.07 5.30 5.30 Total: -1.00 -34.90 351.65 -7.77 -42.67 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -7.98 Total: -3.01 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -1.09 Total: -11.82 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 1.31 Total: -37.09 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.29 Total: -12.59 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.90 -7.77 -42.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119362069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.121 kcal (2) G-P(sol) polarization free energy of solvation -34.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds