Wall clock time and date at job start Tue Mar 31 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50696 * 120.00449 * 2 1 4 4 C 1.52999 * 109.47061 * 294.99928 * 3 2 1 5 5 C 1.53003 * 109.47095 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47023 * 180.02562 * 5 4 3 7 7 H 1.08006 * 120.00349 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00243 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99690 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00253 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46477 * 60.00669 * 10 8 6 12 12 H 1.48503 * 109.47064 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47604 * 300.00939 * 10 8 6 14 14 N 1.28018 * 119.99881 * 179.97438 * 2 1 3 15 15 N 1.40104 * 119.99730 * 0.02562 * 14 2 1 16 16 C 1.34773 * 119.99692 * 179.97438 * 15 14 2 17 17 O 1.21305 * 120.00274 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99991 * 180.02562 * 16 15 14 19 19 C 1.53175 * 109.54351 * 299.55662 * 18 16 15 20 20 C 1.53094 * 109.16661 * 183.15290 * 19 18 16 21 21 O 1.42898 * 109.41211 * 57.60371 * 20 19 18 22 22 C 1.42897 * 114.10001 * 298.84343 * 21 20 19 23 23 C 1.53089 * 109.41656 * 61.16248 * 22 21 20 24 24 H 1.09000 * 109.46962 * 270.00359 * 1 2 3 25 25 H 1.09001 * 109.47067 * 29.99845 * 1 2 3 26 26 H 1.08998 * 109.47430 * 150.00190 * 1 2 3 27 27 H 1.09008 * 109.47461 * 54.99809 * 3 2 1 28 28 H 1.08999 * 109.47214 * 174.99946 * 3 2 1 29 29 H 1.08996 * 109.47205 * 299.99906 * 4 3 2 30 30 H 1.08999 * 109.47092 * 59.99943 * 4 3 2 31 31 H 1.09003 * 109.47187 * 299.99658 * 5 4 3 32 32 H 1.08999 * 109.47096 * 60.00070 * 5 4 3 33 33 H 0.97002 * 119.99715 * 179.97438 * 9 8 6 34 34 H 0.97002 * 120.00231 * 359.97438 * 15 14 2 35 35 H 1.09004 * 109.61503 * 59.77219 * 18 16 15 36 36 H 1.09004 * 109.52259 * 303.05556 * 19 18 16 37 37 H 1.09006 * 109.52330 * 63.24389 * 19 18 16 38 38 H 1.09006 * 109.47665 * 297.62062 * 20 19 18 39 39 H 1.08993 * 109.47955 * 177.58818 * 20 19 18 40 40 H 1.09002 * 109.48425 * 301.17758 * 22 21 20 41 41 H 1.09001 * 109.49443 * 181.15303 * 22 21 20 42 42 H 1.08997 * 109.52675 * 182.48845 * 23 22 21 43 43 H 1.08995 * 109.52428 * 62.29514 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 1.9877 2.0515 -1.3073 5 6 2.7523 3.3768 -1.3071 6 6 2.4830 4.1123 -2.5945 7 1 1.8313 3.6782 -3.3384 8 6 3.0677 5.3400 -2.8224 9 7 3.8609 5.8689 -1.9164 10 14 2.7344 6.2514 -4.4186 11 1 1.2788 6.5191 -4.5410 12 1 3.4764 7.5377 -4.4183 13 1 3.1833 5.4217 -5.5655 14 7 2.1470 -1.1087 0.0005 15 7 1.4464 -2.3220 0.0005 16 6 2.1203 -3.4892 0.0005 17 8 3.3333 -3.4892 0.0000 18 6 1.3668 -4.7942 -0.0001 19 6 0.4934 -4.8822 1.2552 20 6 -0.2071 -6.2431 1.2858 21 8 0.7729 -7.2826 1.2527 22 6 1.5879 -7.2790 0.0790 23 6 2.3606 -5.9598 0.0000 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.9318 1.9145 0.8418 28 1 3.3288 1.1077 0.0896 29 1 2.3164 1.4421 -2.1491 30 1 0.9194 2.2488 -1.3969 31 1 2.4230 3.9860 -0.4653 32 1 3.8206 3.1799 -1.2173 33 1 4.2725 6.7324 -2.0769 34 1 0.4764 -2.3219 0.0005 35 1 0.7365 -4.8525 -0.8875 36 1 1.1181 -4.7742 2.1419 37 1 -0.2534 -4.0884 1.2358 38 1 -0.8628 -6.3339 0.4197 39 1 -0.7966 -6.3281 2.1986 40 1 0.9558 -7.3834 -0.8029 41 1 2.2915 -8.1104 0.1222 42 1 2.9491 -5.9367 -0.9171 43 1 3.0230 -5.8736 0.8612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119362069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:02 Heat of formation + Delta-G solvation = -95.687789 kcal Electronic energy + Delta-G solvation = -21553.868509 eV Core-core repulsion = 18212.051965 eV Total energy + Delta-G solvation = -3341.816544 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.41053 -39.75989 -38.71602 -36.32209 -35.00708 -34.51208 -32.82717 -32.01381 -29.74244 -28.96357 -26.92789 -25.47680 -24.50728 -22.70735 -22.01731 -21.07484 -20.53949 -18.67398 -18.23478 -17.44708 -17.07931 -16.95441 -16.52284 -16.46167 -15.80024 -15.62564 -15.50966 -15.00555 -14.93536 -14.62252 -14.32850 -14.13329 -13.67421 -13.35369 -13.23235 -12.92376 -12.80713 -12.60118 -12.57799 -12.42782 -12.35544 -12.34382 -11.77566 -11.54030 -11.50210 -11.40496 -11.20200 -11.12132 -10.90683 -10.52203 -10.51426 -9.78105 -8.17670 -6.28484 0.77561 1.41228 1.44310 1.49740 1.52180 1.74837 2.42764 2.96883 3.15636 3.33150 3.56622 3.59674 3.68706 3.90728 3.96974 4.16488 4.18309 4.26901 4.37564 4.45816 4.52555 4.56846 4.61637 4.62805 4.69316 4.75405 4.81546 4.96568 5.02187 5.06779 5.08509 5.19245 5.20774 5.24091 5.30984 5.55224 5.78384 5.88995 6.10959 6.26100 6.27098 6.53948 6.88895 7.40502 7.42385 8.93893 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039920 B = 0.002378 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.238738 B =11770.534352 C =11917.301515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 C -0.062 4.062 4 C -0.086 4.086 5 C 0.022 3.978 6 C -0.542 4.542 7 H 0.061 0.939 8 C -0.003 4.003 9 N -0.934 5.934 10 Si 0.964 3.036 11 H -0.262 1.262 12 H -0.285 1.285 13 H -0.271 1.271 14 N -0.302 5.302 15 N -0.577 5.577 16 C 0.527 3.473 17 O -0.563 6.563 18 C -0.095 4.095 19 C -0.145 4.145 20 C 0.061 3.939 21 O -0.405 6.405 22 C 0.066 3.934 23 C -0.137 4.137 24 H 0.107 0.893 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.002 0.998 32 H -0.015 1.015 33 H 0.263 0.737 34 H 0.401 0.599 35 H 0.133 0.867 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.022 -24.796 5.527 29.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.069 4.069 3 C -0.101 4.101 4 C -0.124 4.124 5 C -0.015 4.015 6 C -0.580 4.580 7 H 0.080 0.920 8 C -0.200 4.200 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.187 1.187 12 H -0.210 1.210 13 H -0.196 1.196 14 N -0.107 5.107 15 N -0.322 5.322 16 C 0.315 3.685 17 O -0.439 6.439 18 C -0.117 4.117 19 C -0.183 4.183 20 C -0.015 4.015 21 O -0.324 6.324 22 C -0.011 4.011 23 C -0.176 4.176 24 H 0.125 0.875 25 H 0.115 0.885 26 H 0.100 0.900 27 H 0.120 0.880 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.021 0.979 32 H 0.004 0.996 33 H 0.072 0.928 34 H 0.243 0.757 35 H 0.151 0.849 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.130 0.870 40 H 0.093 0.907 41 H 0.124 0.876 42 H 0.095 0.905 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.205 -25.357 5.719 29.156 hybrid contribution -0.493 1.466 -0.861 1.770 sum -13.699 -23.891 4.858 27.965 Atomic orbital electron populations 1.21492 0.89723 1.05258 1.05313 1.25375 0.96497 0.92774 0.92224 1.20512 0.99289 0.90307 1.00040 1.21357 1.00849 0.95452 0.94777 1.19030 0.94195 0.92555 0.95756 1.21687 1.28503 1.03841 1.04001 0.92034 1.25990 0.94898 0.98695 1.00436 1.70097 1.32322 1.18494 1.36500 0.85525 0.78823 0.77492 0.79352 1.18711 1.21040 1.19573 1.74615 1.26587 0.92589 1.16915 1.46927 1.09284 1.02482 1.73485 1.21435 0.87957 0.84818 0.74251 1.90701 1.16473 1.87766 1.48975 1.21468 0.98134 0.89203 1.02906 1.22263 0.99429 1.00928 0.95698 1.22763 0.89915 0.84448 1.04422 1.87935 1.49465 1.52154 1.42815 1.22684 0.93787 0.96290 0.88336 1.22036 0.97819 0.94332 1.03365 0.87457 0.88525 0.89986 0.88042 0.92421 0.94205 0.90794 0.97915 0.99638 0.92840 0.75651 0.84947 0.92189 0.87870 0.90473 0.87003 0.90700 0.87637 0.90464 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.46 71.23 0.67 -2.02 16 2 C 0.12 3.40 6.55 46.53 0.30 3.70 16 3 C -0.06 -2.03 5.60 29.85 0.17 -1.86 16 4 C -0.09 -3.34 5.03 30.59 0.15 -3.19 16 5 C 0.02 1.13 4.97 29.85 0.15 1.28 16 6 C -0.54 -30.58 9.11 25.60 0.23 -30.35 16 7 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 8 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 9 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 10 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 11 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 14 N -0.30 -9.68 10.93 -41.20 -0.45 -10.13 16 15 N -0.58 -13.83 6.00 -173.52 -1.04 -14.87 16 16 C 0.53 13.77 7.27 87.66 0.64 14.41 16 17 O -0.56 -21.15 16.30 -3.11 -0.05 -21.20 16 18 C -0.09 -1.44 2.61 -11.42 -0.03 -1.47 16 19 C -0.15 -1.60 5.30 30.68 0.16 -1.43 16 20 C 0.06 0.54 6.84 72.01 0.49 1.03 16 21 O -0.40 -6.03 10.76 -148.98 -1.60 -7.63 16 22 C 0.07 0.79 6.84 72.01 0.49 1.28 16 23 C -0.14 -2.34 4.73 30.68 0.15 -2.19 16 24 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.10 1.65 6.91 -2.39 -0.02 1.63 16 26 H 0.08 1.04 6.31 -2.39 -0.02 1.02 16 27 H 0.10 2.97 8.14 -2.38 -0.02 2.95 16 28 H 0.06 2.15 8.11 -2.39 -0.02 2.13 16 29 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 2.56 7.01 -2.39 -0.02 2.54 16 31 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 32 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 33 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.40 5.95 5.90 -213.32 -1.26 4.69 16 35 H 0.13 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.10 0.60 7.70 -2.38 -0.02 0.59 16 38 H 0.08 0.36 8.14 -2.38 -0.02 0.34 16 39 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.06 1.25 8.02 -2.39 -0.02 1.23 16 Total: -1.00 -79.26 351.65 2.94 -76.32 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -0.27 Total: 8.66 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: 4.04 Total: -20.50 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -1.21 Total: -81.77 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -1.65 Total: -28.84 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -79.26 2.94 -76.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119362069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.365 kcal (2) G-P(sol) polarization free energy of solvation -79.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds