Wall clock time and date at job start Tue Mar 31 2020 06:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42901 * 109.47447 * 2 1 4 4 C 1.42897 * 114.00095 * 179.97438 * 3 2 1 5 5 C 1.50708 * 109.46984 * 180.02562 * 4 3 2 6 6 O 1.21276 * 119.99869 * 0.02562 * 5 4 3 7 7 N 1.34776 * 119.99671 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99661 * 179.97438 * 7 5 4 9 9 C 1.53957 * 113.58030 * 205.00293 * 8 7 5 10 10 C 1.52917 * 86.77928 * 220.66444 * 9 8 7 11 11 C 1.52910 * 121.13486 * 259.17796 * 10 9 8 12 12 C 1.53949 * 86.78077 * 209.38575 * 11 10 9 13 13 N 1.46498 * 113.58269 * 139.33921 * 12 11 10 14 14 C 1.36938 * 119.99858 * 107.27989 * 13 12 11 15 15 H 1.07998 * 120.00416 * 359.97438 * 14 13 12 16 16 C 1.38820 * 119.99593 * 180.02562 * 14 13 12 17 17 N 1.31613 * 119.99901 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99783 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47162 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47095 * 119.99593 * 18 16 14 21 21 H 1.48499 * 109.46925 * 239.99781 * 18 16 14 22 22 C 1.52905 * 121.13340 * 150.61497 * 10 9 8 23 23 C 1.52909 * 88.04253 * 24.89691 * 10 9 8 24 24 H 1.09000 * 109.47322 * 299.99960 * 1 2 3 25 25 H 1.08998 * 109.47297 * 59.99842 * 1 2 3 26 26 H 1.09003 * 109.47217 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47322 * 240.00040 * 2 1 3 28 28 H 1.09008 * 109.47341 * 120.00347 * 2 1 3 29 29 H 1.09001 * 109.46771 * 60.00656 * 4 3 2 30 30 H 1.09000 * 109.47557 * 300.00499 * 4 3 2 31 31 H 0.96996 * 120.00391 * 0.02562 * 7 5 4 32 32 H 1.09001 * 112.88003 * 336.14559 * 8 7 5 33 33 H 1.08997 * 113.66354 * 106.19621 * 9 8 7 34 34 H 1.09002 * 113.65722 * 335.13352 * 9 8 7 35 35 H 1.09006 * 113.66074 * 323.85230 * 11 10 9 36 36 H 1.08994 * 113.66448 * 94.91195 * 11 10 9 37 37 H 1.09009 * 113.57633 * 270.12923 * 12 11 10 38 38 H 0.97003 * 119.99770 * 287.27692 * 13 12 11 39 39 H 0.96998 * 120.00002 * 180.02562 * 17 16 14 40 40 H 1.08990 * 113.66878 * 265.09053 * 22 10 9 41 41 H 1.09000 * 113.66430 * 36.05678 * 22 10 9 42 42 H 1.09001 * 113.66026 * 89.57323 * 23 10 9 43 43 H 1.08998 * 113.66179 * 220.53611 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4600 0.0006 5 6 3.8194 2.9161 0.0012 6 8 2.9610 3.7728 0.0016 7 7 5.1210 3.2662 0.0013 8 6 5.4987 4.6816 0.0012 9 6 6.8931 4.9469 -0.5950 10 6 7.0895 5.9575 0.5357 11 6 6.9222 7.4579 0.2930 12 6 7.9529 7.6666 1.4173 13 7 8.9188 8.7317 1.1367 14 6 8.8379 9.9232 1.8067 15 1 8.0620 10.0779 2.5417 16 6 9.7529 10.9327 1.5403 17 7 10.6982 10.7444 0.6442 18 14 9.6423 12.5584 2.4538 19 1 8.4992 12.5172 3.4009 20 1 10.9013 12.7899 3.2065 21 1 9.4380 13.6605 1.4798 22 6 8.4804 6.2564 1.0961 23 6 6.0624 5.1686 1.3485 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8339 0.9764 -0.8892 30 1 3.8333 0.9766 0.8907 31 1 5.8075 2.5810 0.0006 32 1 4.7206 5.3279 -0.4050 33 1 6.8662 5.3994 -1.5863 34 1 7.5639 4.0897 -0.5371 35 1 7.2714 7.7842 -0.6867 36 1 5.9278 7.8321 0.5361 37 1 7.5064 7.7498 2.4083 38 1 9.6155 8.5929 0.4762 39 1 11.3378 11.4496 0.4583 40 1 8.7309 5.6709 1.9806 41 1 9.2678 6.2435 0.3424 42 1 6.4998 4.3737 1.9527 43 1 5.3729 5.7980 1.9110 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120563710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:56 Heat of formation + Delta-G solvation = -32.630791 kcal Electronic energy + Delta-G solvation = -21532.467122 eV Core-core repulsion = 18193.384935 eV Total energy + Delta-G solvation = -3339.082187 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.59736 -39.43173 -37.87972 -35.83269 -33.67461 -32.34660 -31.76338 -29.60465 -27.89636 -25.77329 -25.18394 -24.16036 -23.19866 -22.45057 -20.75587 -20.07054 -17.84462 -17.39777 -17.14090 -16.97953 -16.78894 -16.03523 -15.30771 -14.94610 -14.75756 -14.57270 -14.09243 -13.46855 -13.44908 -13.20092 -12.90663 -12.73837 -12.56804 -12.46948 -11.93869 -11.79008 -11.65297 -11.61853 -11.26703 -11.17739 -10.84834 -10.75739 -10.28458 -10.10258 -10.01836 -9.90582 -9.78572 -9.67944 -9.37344 -9.09366 -8.84515 -6.93403 -5.76560 -3.04752 2.42082 2.57132 3.44140 3.50182 3.52223 3.66672 4.43012 4.57521 4.59114 4.60722 4.67499 4.69801 4.80081 4.81810 4.83669 4.92211 4.93389 5.26128 5.39985 5.46175 5.50857 5.57004 5.70477 5.74560 5.81256 5.92264 5.95018 5.98775 6.10519 6.20814 6.26041 6.37492 6.43081 6.49562 6.66028 6.68624 6.95120 7.15508 7.33455 7.72632 8.05729 8.42438 9.53550 10.12308 10.46663 11.46035 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.051386 B = 0.002362 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.767347 B =11852.181597 C =12148.319977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.044 3.956 5 C 0.511 3.489 6 O -0.519 6.519 7 N -0.718 5.718 8 C 0.125 3.875 9 C -0.130 4.130 10 C -0.101 4.101 11 C -0.142 4.142 12 C 0.168 3.832 13 N -0.713 5.713 14 C -0.241 4.241 15 H 0.072 0.928 16 C -0.015 4.015 17 N -0.933 5.933 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.135 4.135 23 C -0.125 4.125 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.399 0.601 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.385 0.615 39 H 0.254 0.746 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.922 -24.712 -2.308 27.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.036 4.036 5 C 0.296 3.704 6 O -0.393 6.393 7 N -0.371 5.371 8 C 0.021 3.979 9 C -0.168 4.168 10 C -0.103 4.103 11 C -0.183 4.183 12 C 0.056 3.944 13 N -0.351 5.351 14 C -0.372 4.372 15 H 0.090 0.910 16 C -0.211 4.211 17 N -0.582 5.582 18 Si 0.738 3.262 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.174 4.174 23 C -0.164 4.164 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.234 0.766 32 H 0.132 0.868 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.219 0.781 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.725 -23.743 -2.184 27.511 hybrid contribution 0.812 0.195 0.182 0.855 sum -12.913 -23.547 -2.002 26.930 Atomic orbital electron populations 1.21733 0.93340 1.02259 1.03566 1.22554 0.96073 0.83329 1.00162 1.88039 1.18458 1.26378 1.95415 1.22210 0.84084 0.94826 1.02493 1.20280 0.83000 0.90463 0.76650 1.90746 1.49337 1.51727 1.47477 1.45959 1.06626 1.08878 1.75614 1.22635 0.96629 0.80897 0.97768 1.23186 0.94959 0.99424 0.99265 1.22092 0.96991 0.95123 0.96063 1.23607 1.01120 0.91207 1.02392 1.21541 0.90338 0.86911 0.95583 1.42427 1.33487 1.11890 1.47332 1.19373 1.10715 0.90976 1.16176 0.91034 1.24763 0.98052 0.98638 0.99604 1.69668 1.18891 1.33471 1.36129 0.86120 0.77180 0.83997 0.78929 1.20517 1.21894 1.21881 1.23262 0.94919 0.99214 1.00053 1.23148 0.97677 0.99241 0.96286 0.91621 0.91648 0.90948 0.93192 0.93171 0.90339 0.90311 0.76647 0.86760 0.90765 0.89900 0.90099 0.92485 0.90784 0.78133 0.93568 0.92292 0.90214 0.89898 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.15 0.38 -0.57 16 2 C 0.06 0.38 6.66 37.15 0.25 0.63 16 3 O -0.36 -3.93 9.88 -55.14 -0.54 -4.48 16 4 C 0.04 0.35 6.42 36.01 0.23 0.59 16 5 C 0.51 5.96 7.91 -10.98 -0.09 5.87 16 6 O -0.52 -8.74 16.10 -14.35 -0.23 -8.97 16 7 N -0.72 -6.75 5.35 -52.85 -0.28 -7.04 16 8 C 0.12 1.46 4.24 -66.95 -0.28 1.18 16 9 C -0.13 -1.47 7.59 -26.28 -0.20 -1.67 16 10 C -0.10 -1.41 1.11 -154.71 -0.17 -1.58 16 11 C -0.14 -2.47 7.64 -26.28 -0.20 -2.67 16 12 C 0.17 3.34 4.48 -66.95 -0.30 3.04 16 13 N -0.71 -17.97 5.40 -52.47 -0.28 -18.25 16 14 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 15 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 16 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 17 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 18 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 C -0.14 -2.17 7.59 -26.28 -0.20 -2.37 16 23 C -0.12 -1.55 7.64 -26.28 -0.20 -1.75 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.27 8.14 -51.92 -0.42 -0.16 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.40 2.39 8.73 -40.82 -0.36 2.03 16 32 H 0.11 1.60 7.47 -51.93 -0.39 1.21 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.49 8.10 -51.92 -0.42 1.07 16 38 H 0.38 10.23 7.92 -40.82 -0.32 9.91 16 39 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.32 8.12 -51.93 -0.42 0.90 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 358.12 15.07 5.40 5.40 Total: -1.00 -34.25 358.12 -8.65 -42.89 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -7.37 Total: 7.22 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -1.03 Total: -6.74 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: 0.16 Total: -52.85 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.78 Total: -13.45 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.25 -8.65 -42.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120563710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.261 kcal (2) G-P(sol) polarization free energy of solvation -34.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds