Wall clock time and date at job start Tue Mar 31 2020 05:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99895 * 2 1 4 4 H 1.08993 * 109.47899 * 330.00322 * 3 2 1 5 5 C 1.53009 * 109.46628 * 90.00280 * 3 2 1 6 6 C 1.50700 * 109.47145 * 209.99647 * 3 2 1 7 7 O 1.21282 * 120.00062 * 0.02562 * 6 3 2 8 8 N 1.34782 * 120.00148 * 180.02562 * 6 3 2 9 9 C 1.46497 * 120.00156 * 180.02562 * 8 6 3 10 10 C 1.53949 * 113.57877 * 154.99733 * 9 8 6 11 11 C 1.52903 * 86.78075 * 89.87216 * 10 9 8 12 12 C 1.52910 * 121.13886 * 259.17953 * 11 10 9 13 13 C 1.53950 * 86.78717 * 209.38108 * 12 11 10 14 14 N 1.46496 * 113.58021 * 139.33339 * 13 12 11 15 15 C 1.36940 * 119.99523 * 107.28284 * 14 13 12 16 16 H 1.07998 * 120.00443 * 359.97438 * 15 14 13 17 17 C 1.38824 * 119.99745 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99935 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99860 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47240 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47228 * 120.00177 * 19 17 15 22 22 H 1.48498 * 109.47040 * 239.99788 * 19 17 15 23 23 C 1.52917 * 121.14033 * 150.62039 * 11 10 9 24 24 C 1.52907 * 88.04638 * 24.89875 * 11 10 9 25 25 H 1.08996 * 109.47199 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47150 * 300.00006 * 1 2 3 27 27 H 1.09004 * 109.46555 * 59.99685 * 1 2 3 28 28 H 1.08995 * 109.47103 * 59.99983 * 5 3 2 29 29 H 1.09002 * 109.46943 * 179.97438 * 5 3 2 30 30 H 1.09000 * 109.47001 * 299.99356 * 5 3 2 31 31 H 0.96996 * 119.99710 * 0.02562 * 8 6 3 32 32 H 1.09008 * 112.87605 * 23.85967 * 9 8 6 33 33 H 1.08999 * 113.66653 * 335.39910 * 10 9 8 34 34 H 1.09000 * 113.66492 * 204.34103 * 10 9 8 35 35 H 1.09007 * 113.66009 * 323.85167 * 12 11 10 36 36 H 1.09002 * 113.66292 * 94.90250 * 12 11 10 37 37 H 1.09001 * 113.57502 * 270.13001 * 13 12 11 38 38 H 0.96998 * 120.00298 * 287.28307 * 14 13 12 39 39 H 0.96993 * 120.00000 * 180.02562 * 18 17 15 40 40 H 1.09001 * 113.65915 * 265.09197 * 23 11 10 41 41 H 1.08997 * 113.66386 * 36.04920 * 23 11 10 42 42 H 1.08995 * 113.66604 * 89.57097 * 24 11 10 43 43 H 1.08996 * 113.66613 * 220.63169 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3451 1.9994 -0.5137 5 6 2.2177 1.7712 1.4426 6 6 3.3387 1.2639 -0.7103 7 8 3.7473 0.2193 -1.1716 8 7 4.0728 2.3876 -0.8330 9 6 5.3639 2.3473 -1.5240 10 6 5.7876 3.7034 -2.1170 11 6 6.4708 3.9783 -0.7770 12 6 5.8149 4.8719 0.2764 13 6 7.2403 5.2324 0.7329 14 7 7.4088 6.6494 1.0641 15 6 7.5369 7.0363 2.3714 16 1 7.5132 6.2970 3.1583 17 6 7.6971 8.3791 2.6853 18 7 7.7264 9.2801 1.7263 19 14 7.8710 8.9070 4.4686 20 1 7.8051 7.7118 5.3474 21 1 9.1761 9.5898 4.6577 22 1 6.7694 9.8394 4.8185 23 6 7.7082 4.8725 -0.6890 24 6 6.5727 2.4657 -0.5780 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 2.8829 1.0773 1.9564 29 1 2.6615 2.7668 1.4427 30 1 1.2569 1.8013 1.9564 31 1 3.7461 3.2229 -0.4638 32 1 5.4415 1.5197 -2.2292 33 1 4.9510 4.3699 -2.3264 34 1 6.4821 3.6177 -2.9526 35 1 5.2646 5.7132 -0.1450 36 1 5.2427 4.3208 1.0227 37 1 7.6328 4.5676 1.5024 38 1 7.4297 7.3135 0.3574 39 1 7.8388 10.2183 1.9456 40 1 8.6485 4.3217 -0.7139 41 1 7.6908 5.7130 -1.3827 42 1 7.4878 2.0320 -0.9812 43 1 6.3631 2.1435 0.4419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120731921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:57 Heat of formation + Delta-G solvation = -28.904482 kcal Electronic energy + Delta-G solvation = -22450.633428 eV Core-core repulsion = 19111.712826 eV Total energy + Delta-G solvation = -3338.920602 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.78073 -39.50627 -37.68545 -35.77944 -33.66031 -32.62591 -31.16070 -29.53996 -27.10140 -25.77067 -25.29068 -24.82361 -23.99529 -22.26107 -20.65038 -19.87200 -17.93864 -17.63407 -17.10868 -17.01332 -16.00386 -15.58389 -15.24910 -15.02613 -14.69088 -14.45951 -14.00319 -13.75319 -13.46907 -13.14154 -12.94798 -12.77133 -12.52753 -12.36464 -12.16327 -11.98420 -11.66857 -11.45780 -11.29934 -11.02872 -10.86039 -10.80549 -10.27446 -10.19679 -9.99540 -9.86503 -9.77275 -9.60728 -9.37092 -9.04466 -8.87827 -6.97967 -5.80793 -3.09232 2.46529 2.70707 3.40345 3.46475 3.48478 3.71990 4.42325 4.54765 4.58417 4.62984 4.66977 4.73100 4.79357 4.92597 4.98259 5.04965 5.27423 5.33513 5.37117 5.40943 5.44522 5.65440 5.77885 5.81465 5.83025 5.85625 5.93273 5.97808 6.06837 6.18640 6.23576 6.33332 6.37423 6.50260 6.59287 6.74546 6.91903 7.10909 7.41709 7.67923 8.12027 8.38153 9.49273 10.08000 10.42269 11.41741 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020408 B = 0.003526 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.650648 B = 7938.191697 C = 8934.074771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.069 3.931 4 H 0.087 0.913 5 C -0.173 4.173 6 C 0.516 3.484 7 O -0.523 6.523 8 N -0.705 5.705 9 C 0.122 3.878 10 C -0.132 4.132 11 C -0.105 4.105 12 C -0.144 4.144 13 C 0.170 3.830 14 N -0.713 5.713 15 C -0.242 4.242 16 H 0.071 0.929 17 C -0.014 4.014 18 N -0.933 5.933 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.292 1.292 23 C -0.139 4.139 24 C -0.126 4.126 25 H 0.090 0.910 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.403 0.597 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.385 0.615 39 H 0.255 0.745 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.059 -14.535 -6.231 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.008 3.992 4 H 0.105 0.895 5 C -0.230 4.230 6 C 0.301 3.699 7 O -0.398 6.398 8 N -0.358 5.358 9 C 0.017 3.983 10 C -0.170 4.170 11 C -0.106 4.106 12 C -0.185 4.185 13 C 0.058 3.942 14 N -0.351 5.351 15 C -0.373 4.373 16 H 0.089 0.911 17 C -0.210 4.210 18 N -0.581 5.581 19 Si 0.737 3.263 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.178 4.178 24 C -0.164 4.164 25 H 0.108 0.892 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.239 0.761 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.625 -15.434 -6.352 20.340 hybrid contribution -0.312 1.317 0.927 1.640 sum -11.937 -14.117 -5.425 19.267 Atomic orbital electron populations 1.22881 0.80639 1.03211 1.00073 1.88046 1.19641 1.25200 1.94943 1.21946 0.93506 0.86827 0.96932 0.89501 1.22260 1.03550 1.02401 0.94822 1.20372 0.85858 0.83943 0.79734 1.90709 1.71522 1.30156 1.47424 1.45633 1.20360 1.11269 1.58554 1.21865 0.82325 0.99112 0.94965 1.23155 1.00414 0.95633 0.97793 1.22367 0.98844 0.93979 0.95399 1.23613 1.00946 0.97558 0.96359 1.21505 0.92255 0.87443 0.93036 1.42434 1.85738 1.01142 1.05813 1.19356 1.41764 0.91668 0.84530 0.91092 1.24762 1.02833 0.95936 0.97442 1.69666 1.57115 1.00763 1.30555 0.86133 0.77294 0.78291 0.84574 1.20525 1.21852 1.21870 1.23280 0.95972 0.98489 1.00053 1.23122 0.97912 0.95091 1.00309 0.89174 0.93751 0.93852 0.90932 0.90548 0.91149 0.76141 0.88351 0.91058 0.88910 0.90190 0.92821 0.90862 0.78126 0.93527 0.92232 0.90267 0.89189 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.30 16 2 O -0.36 -4.23 9.88 -55.14 -0.54 -4.77 16 3 C 0.07 0.69 3.14 -27.88 -0.09 0.61 16 4 H 0.09 0.65 7.79 -51.93 -0.40 0.25 16 5 C -0.17 -1.48 9.42 37.16 0.35 -1.13 16 6 C 0.52 6.62 7.23 -10.98 -0.08 6.54 16 7 O -0.52 -8.92 16.10 -14.35 -0.23 -9.15 16 8 N -0.71 -7.83 5.15 -52.85 -0.27 -8.10 16 9 C 0.12 1.44 4.31 -66.95 -0.29 1.15 16 10 C -0.13 -1.48 7.59 -26.29 -0.20 -1.68 16 11 C -0.11 -1.40 1.02 -154.71 -0.16 -1.55 16 12 C -0.14 -2.26 6.97 -26.28 -0.18 -2.44 16 13 C 0.17 3.24 4.48 -66.95 -0.30 2.94 16 14 N -0.71 -17.45 5.40 -52.47 -0.28 -17.74 16 15 C -0.24 -6.60 9.97 -15.05 -0.15 -6.75 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 19 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 23 C -0.14 -2.20 7.59 -26.28 -0.20 -2.40 16 24 C -0.13 -1.55 7.64 -26.28 -0.20 -1.75 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.26 7.87 -51.93 -0.41 -0.15 16 27 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.59 7.56 -51.93 -0.39 0.20 16 30 H 0.07 0.49 7.87 -51.93 -0.41 0.09 16 31 H 0.40 3.85 7.42 -40.82 -0.30 3.54 16 32 H 0.10 1.24 7.47 -51.92 -0.39 0.85 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 36 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 37 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 38 H 0.38 10.01 7.92 -40.82 -0.32 9.68 16 39 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.30 8.12 -51.93 -0.42 0.88 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 353.72 15.07 5.33 5.33 Total: -1.00 -32.85 353.72 -8.04 -40.89 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -7.24 Total: 9.20 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -0.50 Total: -5.65 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.17 Total: -52.88 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.78 Total: -13.93 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.85 -8.04 -40.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120731921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.988 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds