Wall clock time and date at job start Tue Mar 31 2020 05:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47157 * 2 1 4 4 C 1.52996 * 109.46997 * 239.99640 * 2 1 3 5 5 C 1.53004 * 109.47039 * 176.76927 * 4 2 1 6 6 H 1.09005 * 109.46784 * 53.94279 * 5 4 2 7 7 C 1.52989 * 109.47354 * 293.93581 * 5 4 2 8 8 N 1.46498 * 109.47165 * 173.93463 * 5 4 2 9 9 C 1.34776 * 120.00410 * 207.81956 * 8 5 4 10 10 O 1.21745 * 119.99590 * 5.12561 * 9 8 5 11 11 C 1.41800 * 120.00234 * 185.12934 * 9 8 5 12 12 C 1.33454 * 118.78440 * 185.43563 * 11 9 8 13 13 O 1.34352 * 123.07655 * 180.41693 * 12 11 9 14 14 C 1.45351 * 117.48321 * 343.64636 * 13 12 11 15 15 C 1.53485 * 108.26051 * 47.47819 * 14 13 12 16 16 C 1.50410 * 118.78647 * 5.16770 * 11 9 8 17 17 N 1.46502 * 109.47375 * 119.99744 * 2 1 3 18 18 C 1.36934 * 120.00053 * 278.16821 * 17 2 1 19 19 H 1.08006 * 120.00258 * 354.92223 * 18 17 2 20 20 C 1.38815 * 120.00271 * 174.93106 * 18 17 2 21 21 N 1.31615 * 119.99842 * 5.08206 * 20 18 17 22 22 Si 1.86804 * 119.99920 * 185.08820 * 20 18 17 23 23 H 1.48492 * 109.47330 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.46919 * 119.99606 * 22 20 18 25 25 H 1.48493 * 109.47006 * 239.99613 * 22 20 18 26 26 H 1.08999 * 109.47495 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47342 * 300.00237 * 1 2 3 28 28 H 1.08993 * 109.47435 * 59.99848 * 1 2 3 29 29 H 1.08999 * 109.47147 * 296.77124 * 4 2 1 30 30 H 1.08999 * 109.47365 * 56.77547 * 4 2 1 31 31 H 1.09002 * 109.47469 * 59.99974 * 7 5 4 32 32 H 1.09003 * 109.47093 * 179.97438 * 7 5 4 33 33 H 1.08994 * 109.47698 * 299.99613 * 7 5 4 34 34 H 0.97000 * 119.99914 * 27.81584 * 8 5 4 35 35 H 1.08005 * 118.46429 * 0.39108 * 12 11 9 36 36 H 1.08992 * 109.70706 * 167.16972 * 14 13 12 37 37 H 1.09005 * 109.70799 * 287.75121 * 14 13 12 38 38 H 1.09004 * 109.70532 * 56.99019 * 15 14 13 39 39 H 1.09000 * 109.70643 * 177.56528 * 15 14 13 40 40 H 1.09001 * 109.45894 * 282.38392 * 16 11 9 41 41 H 1.09005 * 109.45409 * 42.32332 * 16 11 9 42 42 H 0.96994 * 120.00017 * 98.15687 * 17 2 1 43 43 H 0.97002 * 119.99909 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5678 -0.6513 -1.2905 6 1 3.9744 -1.0330 -0.3539 7 6 4.0068 0.8016 -1.4827 8 7 4.0639 -1.4628 -2.4047 9 6 5.2906 -2.0174 -2.3408 10 8 5.9490 -1.9227 -1.3211 11 6 5.8144 -2.7111 -3.4612 12 6 6.9826 -3.3440 -3.3364 13 8 7.5615 -4.0200 -4.3428 14 6 6.7308 -4.3642 -5.4848 15 6 5.9484 -3.1124 -5.9052 16 6 5.0299 -2.7114 -4.7444 17 7 2.0184 -0.6906 1.1962 18 6 2.0878 -0.0248 2.3908 19 1 1.8610 1.0303 2.4350 20 6 2.4497 -0.7057 3.5450 21 7 2.8229 -1.9660 3.4758 22 14 2.4071 0.1665 5.1963 23 1 1.9564 1.5683 5.0042 24 1 1.4650 -0.5369 6.1035 25 1 3.7665 0.1616 5.7939 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.7246 -1.7643 -1.2206 30 1 1.6302 -0.2420 -2.1382 31 1 3.6377 1.4055 -0.6537 32 1 5.0953 0.8515 -1.5117 33 1 3.6002 1.1832 -2.4193 34 1 3.5094 -1.6010 -3.1886 35 1 7.4866 -3.3110 -2.3817 36 1 7.3600 -4.6986 -6.3096 37 1 6.0357 -5.1570 -5.2081 38 1 6.6430 -2.3018 -6.1256 39 1 5.3489 -3.3331 -6.7883 40 1 4.2066 -3.4215 -4.6665 41 1 4.6319 -1.7132 -4.9269 42 1 2.2924 -1.6194 1.1421 43 1 3.0755 -2.4420 4.2824 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133888646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:35 Heat of formation + Delta-G solvation = -62.833341 kcal Electronic energy + Delta-G solvation = -22592.982889 eV Core-core repulsion = 19252.591021 eV Total energy + Delta-G solvation = -3340.391868 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.67630 -39.14422 -36.89092 -34.64198 -34.24429 -32.20931 -31.76238 -30.04747 -28.48300 -26.26047 -25.99205 -24.59003 -23.58156 -22.00145 -20.60550 -19.59975 -18.89101 -17.92528 -17.11486 -16.48320 -15.92131 -15.50835 -14.95110 -14.87002 -14.67903 -14.12371 -14.02893 -13.60347 -13.44654 -13.35502 -13.11039 -12.80678 -12.56509 -12.03713 -11.87287 -11.66435 -11.58631 -11.26195 -11.24098 -10.94560 -10.89554 -10.78676 -10.56336 -10.31903 -10.15294 -9.91020 -9.55826 -9.48012 -8.82285 -8.76599 -8.51729 -6.86427 -5.67702 -2.95902 1.40380 2.98761 3.49368 3.54614 3.57137 3.57195 3.64977 4.32277 4.40918 4.57958 4.66982 4.87174 4.97502 5.12210 5.20954 5.29746 5.36091 5.43524 5.53073 5.63258 5.71560 5.73452 5.82944 5.85475 5.91259 6.08555 6.09672 6.13437 6.25589 6.38170 6.48756 6.60064 6.60915 6.81202 6.94523 6.98283 7.08435 7.14733 7.79344 7.86943 8.50721 8.60513 9.61830 10.19840 10.54450 11.54859 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023159 B = 0.003715 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.718675 B = 7535.640952 C = 8260.191348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.127 4.127 5 C 0.139 3.861 6 H 0.109 0.891 7 C -0.156 4.156 8 N -0.724 5.724 9 C 0.566 3.434 10 O -0.550 6.550 11 C -0.313 4.313 12 C 0.152 3.848 13 O -0.313 6.313 14 C 0.052 3.948 15 C -0.156 4.156 16 C -0.073 4.073 17 N -0.723 5.723 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.929 5.929 22 Si 0.902 3.098 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.293 1.293 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.391 0.609 35 H 0.181 0.819 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.383 0.617 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.685 -2.411 -22.532 22.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.166 4.166 5 C 0.036 3.964 6 H 0.127 0.873 7 C -0.214 4.214 8 N -0.375 5.375 9 C 0.356 3.644 10 O -0.430 6.430 11 C -0.317 4.317 12 C 0.085 3.915 13 O -0.223 6.223 14 C -0.023 4.023 15 C -0.194 4.194 16 C -0.111 4.111 17 N -0.365 5.365 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.577 5.577 22 Si 0.734 3.266 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.220 1.220 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.225 0.775 35 H 0.198 0.802 36 H 0.125 0.875 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.217 0.783 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.353 -2.275 -21.701 22.249 hybrid contribution -0.610 0.118 0.503 0.800 sum 3.742 -2.157 -21.197 21.633 Atomic orbital electron populations 1.22426 0.99362 1.00765 0.99831 1.20224 0.91704 0.95565 0.86157 0.93331 1.22092 0.93917 1.01533 0.99083 1.21051 0.93975 0.90408 0.90989 0.87299 1.22141 1.01196 0.96624 1.01445 1.46051 1.17080 1.52866 1.21526 1.16582 0.81813 0.78771 0.87221 1.90868 1.59167 1.60903 1.32089 1.20116 1.01667 1.11890 0.98062 1.23013 0.91994 0.85780 0.90727 1.86274 1.39310 1.68900 1.27853 1.23539 0.94579 0.96952 0.87183 1.22209 0.99713 0.98510 0.98932 1.20293 0.97313 1.02540 0.90916 1.42457 1.76944 1.12773 1.04322 1.19229 1.38952 0.93111 0.85533 0.91254 1.24735 1.02354 0.96003 0.97725 1.69687 1.51136 1.09426 1.27456 0.86188 0.77140 0.78500 0.84813 1.20629 1.21983 1.21986 0.93605 0.92739 0.94718 0.91759 0.92212 0.90792 0.93004 0.93568 0.77483 0.80215 0.87521 0.90841 0.90352 0.89645 0.90716 0.90228 0.78291 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.45 37.16 0.35 -2.60 16 2 C 0.17 3.40 2.75 -67.93 -0.19 3.21 16 3 H 0.05 0.96 6.42 -51.93 -0.33 0.63 16 4 C -0.13 -2.04 4.41 -26.73 -0.12 -2.16 16 5 C 0.14 2.40 2.67 -67.94 -0.18 2.21 16 6 H 0.11 2.45 6.71 -51.93 -0.35 2.10 16 7 C -0.16 -2.49 9.29 37.15 0.34 -2.15 16 8 N -0.72 -10.45 4.92 -56.65 -0.28 -10.73 16 9 C 0.57 9.16 7.51 -14.90 -0.11 9.05 16 10 O -0.55 -11.52 15.52 5.15 0.08 -11.44 16 11 C -0.31 -3.85 5.69 -105.08 -0.60 -4.44 16 12 C 0.15 1.83 10.46 29.06 0.30 2.13 16 13 O -0.31 -3.23 10.48 -14.89 -0.16 -3.39 16 14 C 0.05 0.35 7.15 37.41 0.27 0.62 16 15 C -0.16 -1.01 6.24 -26.29 -0.16 -1.17 16 16 C -0.07 -0.62 4.92 -27.84 -0.14 -0.76 16 17 N -0.72 -18.15 4.47 -53.43 -0.24 -18.38 16 18 C -0.24 -6.64 9.90 -15.06 -0.15 -6.79 16 19 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.86 13.07 55.49 0.73 -28.13 16 22 Si 0.90 22.94 29.56 -169.99 -5.02 17.92 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.26 6.53 -51.93 -0.34 0.92 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.39 4.34 6.98 -40.82 -0.28 4.05 16 35 H 0.18 2.29 7.22 -52.48 -0.38 1.91 16 36 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.62 7.48 -51.93 -0.39 0.23 16 42 H 0.38 10.43 7.65 -40.82 -0.31 10.12 16 43 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 348.10 15.07 5.25 5.25 Total: -1.00 -33.93 348.10 -7.13 -41.06 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -7.01 Total: 11.14 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -0.47 Total: -3.29 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.21 Total: -57.24 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.08 Total: -14.83 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.93 -7.13 -41.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133888646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.776 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds