Wall clock time and date at job start Tue Mar 31 2020 05:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 H 1.09004 * 109.47346 * 305.00346 * 5 4 2 7 7 C 1.52997 * 109.47504 * 185.00270 * 5 4 2 8 8 N 1.46497 * 109.47195 * 64.99866 * 5 4 2 9 9 C 1.36939 * 120.00530 * 204.99728 * 8 5 4 10 10 H 1.07999 * 119.99437 * 0.02562 * 9 8 5 11 11 C 1.38808 * 120.00276 * 179.97438 * 9 8 5 12 12 N 1.31624 * 120.00057 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00117 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47073 * 90.00442 * 13 11 9 15 15 H 1.48503 * 109.47509 * 210.00409 * 13 11 9 16 16 H 1.48503 * 109.47025 * 330.00544 * 13 11 9 17 17 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 18 18 C 1.34777 * 119.99688 * 274.99602 * 17 2 1 19 19 O 1.21738 * 119.99954 * 0.02562 * 18 17 2 20 20 C 1.41795 * 119.99783 * 180.02562 * 18 17 2 21 21 C 1.33457 * 118.78457 * 179.73693 * 20 18 17 22 22 O 1.34354 * 123.07900 * 180.11232 * 21 20 18 23 23 C 1.45349 * 117.54398 * 344.21844 * 22 21 20 24 24 C 1.53479 * 108.26669 * 47.22163 * 23 22 21 25 25 C 1.50419 * 118.78672 * 359.97438 * 20 18 17 26 26 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 27 27 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 28 28 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 30 30 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 31 31 H 1.09004 * 109.46881 * 300.00361 * 7 5 4 32 32 H 1.09002 * 109.47016 * 59.99741 * 7 5 4 33 33 H 1.09000 * 109.47400 * 180.02562 * 7 5 4 34 34 H 0.97001 * 119.99762 * 25.00311 * 8 5 4 35 35 H 0.97002 * 119.99591 * 179.97438 * 12 11 9 36 36 H 0.96993 * 119.99992 * 94.99462 * 17 2 1 37 37 H 1.07999 * 118.46198 * 0.38932 * 21 20 18 38 38 H 1.09001 * 109.70318 * 287.52898 * 23 22 21 39 39 H 1.08997 * 109.74051 * 166.93782 * 23 22 21 40 40 H 1.09004 * 109.70565 * 177.60187 * 24 23 22 41 41 H 1.09007 * 109.70411 * 56.99235 * 24 23 22 42 42 H 1.08998 * 109.45507 * 282.35582 * 25 20 18 43 43 H 1.08995 * 109.45514 * 42.32541 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6241 8 7 4.1536 -1.3342 -0.1825 9 6 5.3943 -0.9857 0.2805 10 1 5.9386 -0.1791 -0.1881 11 6 5.9520 -1.6685 1.3527 12 7 5.2885 -2.6512 1.9241 13 14 7.6442 -1.1926 1.9847 14 1 7.5054 -0.1550 3.0381 15 1 8.3147 -2.3892 2.5539 16 1 8.4578 -0.6551 0.8647 17 7 2.0184 -0.6907 1.1962 18 6 2.1471 -0.0184 2.3571 19 8 1.8572 1.1627 2.4119 20 6 2.6203 -0.6868 3.5147 21 6 2.7435 0.0036 4.6502 22 8 3.1848 -0.5419 5.7959 23 6 3.2052 -1.9925 5.8855 24 6 3.8492 -2.5445 4.6063 25 6 2.9700 -2.1464 3.4162 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.7515 -1.7715 -1.2057 30 1 1.6053 -0.2617 -2.1370 31 1 3.7721 -2.2741 -2.6701 32 1 3.6262 -0.6886 -3.4658 33 1 5.1508 -1.1485 -2.6699 34 1 3.6647 -2.0585 0.2385 35 1 5.6785 -3.1285 2.6731 36 1 2.2490 -1.6319 1.1525 37 1 2.4716 1.0488 4.6491 38 1 2.1865 -2.3695 5.9763 39 1 3.7893 -2.2996 6.7530 40 1 3.9152 -3.6308 4.6673 41 1 4.8464 -2.1214 4.4848 42 1 2.0559 -2.7401 3.4251 43 1 3.5120 -2.3281 2.4882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133888648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:40 Heat of formation + Delta-G solvation = -51.546380 kcal Electronic energy + Delta-G solvation = -24338.131536 eV Core-core repulsion = 20998.229107 eV Total energy + Delta-G solvation = -3339.902428 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.96778 -38.64976 -36.73275 -34.14501 -33.64449 -32.03662 -31.17720 -30.10274 -28.52369 -26.30660 -25.05975 -23.80368 -23.64699 -21.31282 -20.22441 -19.93683 -18.22334 -17.25968 -17.13603 -15.95811 -15.45027 -14.97347 -14.73506 -14.50452 -14.05898 -13.76843 -13.61652 -13.27718 -12.97333 -12.84277 -12.61991 -12.31277 -12.13659 -11.97692 -11.79932 -11.66925 -11.62577 -10.99674 -10.84222 -10.77320 -10.58938 -10.34205 -10.26125 -10.20450 -9.95568 -9.84762 -9.63636 -9.02448 -8.92377 -8.27478 -7.71148 -6.93897 -5.82842 -3.09892 2.12704 3.41265 3.46216 3.49391 3.71852 4.07798 4.29378 4.55899 5.15369 5.29954 5.36237 5.43456 5.48615 5.51621 5.56440 5.72891 5.77321 5.83132 5.87800 5.95851 6.03253 6.04557 6.15046 6.22112 6.26489 6.33063 6.40130 6.47898 6.58181 6.63139 6.70177 6.85272 6.86245 7.00668 7.06185 7.35671 7.56424 7.71795 7.86718 8.37625 8.43490 9.13087 9.47653 9.98964 10.35334 11.34879 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012151 B = 0.009564 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.738968 B = 2926.914642 C = 4588.384378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.081 0.919 4 C -0.133 4.133 5 C 0.168 3.832 6 H 0.048 0.952 7 C -0.163 4.163 8 N -0.716 5.716 9 C -0.214 4.214 10 H 0.067 0.933 11 C -0.014 4.014 12 N -0.927 5.927 13 Si 0.903 3.097 14 H -0.291 1.291 15 H -0.293 1.293 16 H -0.285 1.285 17 N -0.696 5.696 18 C 0.582 3.418 19 O -0.586 6.586 20 C -0.272 4.272 21 C 0.115 3.885 22 O -0.320 6.320 23 C 0.049 3.951 24 C -0.134 4.134 25 C -0.115 4.115 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.035 0.965 33 H 0.052 0.948 34 H 0.377 0.623 35 H 0.257 0.743 36 H 0.403 0.597 37 H 0.168 0.832 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.042 0.958 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.735 -1.008 0.404 7.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 H 0.099 0.901 4 C -0.172 4.172 5 C 0.059 3.941 6 H 0.066 0.934 7 C -0.223 4.223 8 N -0.359 5.359 9 C -0.345 4.345 10 H 0.085 0.915 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.735 3.265 14 H -0.219 1.219 15 H -0.219 1.219 16 H -0.211 1.211 17 N -0.348 5.348 18 C 0.374 3.626 19 O -0.471 6.471 20 C -0.276 4.276 21 C 0.048 3.952 22 O -0.232 6.232 23 C -0.025 4.025 24 C -0.172 4.172 25 C -0.152 4.152 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.212 0.788 35 H 0.068 0.932 36 H 0.242 0.758 37 H 0.185 0.815 38 H 0.080 0.920 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.060 0.940 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.670 -0.051 0.620 7.695 hybrid contribution 0.958 -0.650 0.369 1.215 sum -6.713 -0.701 0.990 6.821 Atomic orbital electron populations 1.22203 0.96548 1.01444 1.01779 1.20753 0.92358 0.97733 0.84792 0.90052 1.22203 0.97676 1.00569 0.96767 1.20295 0.89829 0.95876 0.88111 0.93376 1.22412 1.01481 1.00342 0.98066 1.42485 1.18639 1.39900 1.34856 1.19265 0.92977 1.12422 1.09826 0.91459 1.24471 0.98658 0.98840 0.98829 1.68939 1.36993 1.25132 1.26763 0.86219 0.84309 0.77226 0.78733 1.21851 1.21910 1.21130 1.45871 1.66083 1.14214 1.08660 1.16533 0.76515 0.85935 0.83606 1.90693 1.53959 1.16200 1.86213 1.20202 1.13628 0.99777 0.94039 1.22681 0.90639 0.97749 0.84134 1.86160 1.79060 1.23299 1.34697 1.23555 1.00942 0.77931 1.00085 1.21942 1.00757 1.00948 0.93515 1.21306 0.98706 0.89318 1.05840 0.92456 0.92335 0.92973 0.91854 0.90920 0.93609 0.94565 0.92895 0.78779 0.93193 0.75838 0.81539 0.92045 0.88693 0.90836 0.90400 0.93950 0.81232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.48 37.16 0.35 -1.93 16 2 C 0.15 2.49 2.57 -67.93 -0.17 2.31 16 3 H 0.08 1.55 7.58 -51.93 -0.39 1.15 16 4 C -0.13 -2.02 4.43 -26.73 -0.12 -2.14 16 5 C 0.17 3.10 2.89 -67.93 -0.20 2.91 16 6 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 7 C -0.16 -2.75 9.49 37.16 0.35 -2.40 16 8 N -0.72 -15.69 3.84 -53.43 -0.21 -15.90 16 9 C -0.21 -5.40 9.93 -15.06 -0.15 -5.55 16 10 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 11 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 12 N -0.93 -22.93 8.92 55.49 0.50 -22.43 16 13 Si 0.90 21.54 29.55 -169.99 -5.02 16.52 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 N -0.70 -13.04 3.71 -56.65 -0.21 -13.25 16 18 C 0.58 12.27 7.50 -14.90 -0.11 12.16 16 19 O -0.59 -13.59 15.58 5.16 0.08 -13.51 16 20 C -0.27 -5.45 5.70 -105.07 -0.60 -6.05 16 21 C 0.11 2.19 10.47 29.06 0.30 2.49 16 22 O -0.32 -5.68 10.47 -14.90 -0.16 -5.84 16 23 C 0.05 0.74 7.15 37.41 0.27 1.00 16 24 C -0.13 -2.33 5.37 -26.37 -0.14 -2.47 16 25 C -0.12 -2.18 4.89 -27.90 -0.14 -2.32 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.38 8.40 5.28 -40.82 -0.22 8.19 16 35 H 0.26 6.32 7.43 -40.82 -0.30 6.01 16 36 H 0.40 7.57 4.64 -40.82 -0.19 7.38 16 37 H 0.17 3.08 7.21 -52.49 -0.38 2.70 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.08 1.58 7.53 -51.92 -0.39 1.19 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.17 3.65 3.18 -51.93 -0.17 3.48 16 LS Contribution 335.23 15.07 5.05 5.05 Total: -1.00 -27.32 335.23 -7.15 -34.47 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -6.74 Total: 17.33 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -0.45 Total: -2.43 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.08 Total: -51.59 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.08 Total: -19.35 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.32 -7.15 -34.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133888648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.078 kcal (2) G-P(sol) polarization free energy of solvation -27.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds