Wall clock time and date at job start Tue Mar 31 2020 05:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.50837 * 2 1 4 4 C 1.53089 * 109.51010 * 239.91082 * 2 1 3 5 5 N 1.47010 * 109.26084 * 183.22074 * 4 2 1 6 6 C 1.46900 * 111.00366 * 182.39332 * 5 4 2 7 7 C 1.53949 * 113.74275 * 83.32159 * 6 5 4 8 8 N 1.47577 * 86.11578 * 137.95529 * 7 6 5 9 9 C 1.34779 * 134.49282 * 155.35728 * 8 7 6 10 10 O 1.21281 * 120.00204 * 179.97438 * 9 8 7 11 11 C 1.50698 * 119.99739 * 0.02562 * 9 8 7 12 12 C 1.50705 * 109.47211 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99723 * 359.97438 * 12 11 9 14 14 C 1.37872 * 119.99909 * 180.02562 * 12 11 9 15 15 N 1.31511 * 120.00425 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99809 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47329 * 89.99522 * 16 14 12 18 18 H 1.48498 * 109.47312 * 209.99952 * 16 14 12 19 19 H 1.48503 * 109.46754 * 329.99497 * 16 14 12 20 20 C 1.47577 * 91.01786 * 335.35971 * 8 7 6 21 21 C 1.47018 * 110.75581 * 58.61519 * 5 4 2 22 22 C 1.53102 * 109.25436 * 301.38554 * 21 5 4 23 23 H 1.08997 * 109.54283 * 176.80500 * 22 21 5 24 24 C 1.52999 * 109.50877 * 296.91398 * 22 21 5 25 25 O 1.43014 * 109.25687 * 56.85004 * 22 21 5 26 26 H 1.08999 * 109.47107 * 180.08787 * 1 2 3 27 27 H 1.09002 * 109.47105 * 300.09044 * 1 2 3 28 28 H 1.09002 * 109.46827 * 60.09156 * 1 2 3 29 29 H 1.09001 * 109.50775 * 63.28440 * 4 2 1 30 30 H 1.09004 * 109.53995 * 303.17598 * 4 2 1 31 31 H 1.09004 * 113.01551 * 311.66002 * 6 5 4 32 32 H 1.09003 * 113.76698 * 252.25320 * 7 6 5 33 33 H 1.08991 * 113.76686 * 23.65136 * 7 6 5 34 34 H 1.09005 * 109.47510 * 299.99378 * 11 9 8 35 35 H 1.09003 * 109.47504 * 59.99425 * 11 9 8 36 36 H 0.96999 * 120.00118 * 180.02562 * 15 14 12 37 37 H 1.08999 * 113.76881 * 270.34108 * 20 8 7 38 38 H 1.09004 * 113.87317 * 138.95411 * 20 8 7 39 39 H 1.08995 * 109.50728 * 61.31550 * 21 5 4 40 40 H 1.08995 * 109.50649 * 181.45294 * 21 5 4 41 41 H 1.09000 * 109.47302 * 179.78715 * 24 22 21 42 42 H 1.09004 * 109.46765 * 299.78384 * 24 22 21 43 43 H 1.08997 * 109.47217 * 59.78362 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2485 5 7 3.5093 -0.7881 -1.2046 6 6 4.0448 -1.4260 -2.4146 7 6 4.1921 -0.4653 -3.6084 8 7 5.4885 -1.1270 -3.8521 9 6 6.2731 -1.2979 -4.9346 10 8 7.3191 -1.9038 -4.8359 11 6 5.8511 -0.7352 -6.2673 12 6 6.8955 -1.0613 -7.3037 13 1 7.7768 -1.6200 -7.0250 14 6 6.7263 -0.6458 -8.6074 15 7 5.6534 0.0349 -8.9467 16 14 8.0205 -1.0507 -9.8922 17 1 7.6970 -2.3535 -10.5272 18 1 8.0400 0.0134 -10.9278 19 1 9.3534 -1.1339 -9.2429 20 6 5.5808 -1.5266 -2.4344 21 6 3.9640 -1.4885 0.0055 22 6 3.4334 -0.7573 1.2415 23 1 3.7200 -1.3042 2.1397 24 6 4.0228 0.6537 1.2927 25 8 2.0075 -0.6767 1.1660 26 1 -0.3633 -1.0276 0.0016 27 1 -0.3633 0.5152 0.8892 28 1 -0.3633 0.5124 -0.8908 29 1 1.7275 -0.1787 -2.1390 30 1 1.6332 -1.7338 -1.2773 31 1 3.5406 -2.3601 -2.6626 32 1 3.4593 -0.6304 -4.3983 33 1 4.2807 0.5823 -3.3209 34 1 4.8975 -1.1736 -6.5615 35 1 5.7443 0.3467 -6.1876 36 1 5.5342 0.3269 -9.8640 37 1 6.0774 -0.7907 -1.8020 38 1 5.9568 -2.5388 -2.2850 39 1 3.5866 -2.5110 -0.0024 40 1 5.0535 -1.5021 0.0304 41 1 3.6418 1.1751 2.1708 42 1 5.1096 0.5916 1.3502 43 1 3.7372 1.1996 0.3936 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143198940.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:51 Heat of formation + Delta-G solvation = -43.073238 kcal Electronic energy + Delta-G solvation = -22697.604425 eV Core-core repulsion = 19358.069420 eV Total energy + Delta-G solvation = -3339.535005 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.57874 -39.29022 -37.19796 -34.76596 -33.64137 -32.92792 -30.53169 -29.49854 -27.77876 -27.39401 -25.74456 -24.76162 -23.11279 -22.85905 -20.48363 -19.69295 -18.48638 -16.95406 -16.68774 -16.48768 -15.97300 -15.53616 -15.27377 -15.00734 -14.95089 -14.60492 -14.04438 -13.82725 -13.22061 -12.83858 -12.73806 -12.53402 -12.46408 -12.34751 -12.19975 -12.06906 -11.91372 -11.90346 -11.65778 -11.32945 -11.16416 -10.77422 -10.62407 -10.58512 -10.49465 -9.95814 -9.79171 -9.26929 -8.68219 -8.61762 -8.44327 -8.15427 -6.06288 -4.06050 3.22232 3.34738 3.39816 3.46386 3.49779 3.54652 3.83627 4.20577 4.47479 4.57030 4.61884 4.78949 4.88389 4.91766 5.01082 5.10575 5.16048 5.19689 5.31727 5.33655 5.35016 5.45081 5.50460 5.56071 5.64968 5.68539 5.70824 5.73931 5.83223 5.85126 5.86128 6.03428 6.10721 6.62440 6.69878 6.81363 6.99390 7.19814 7.32712 7.95889 8.11855 8.44054 9.04457 9.18922 9.58938 11.06105 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034507 B = 0.003220 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.228662 B = 8694.143004 C = 9209.341352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 H 0.071 0.929 4 C 0.023 3.977 5 N -0.522 5.522 6 C 0.039 3.961 7 C 0.122 3.878 8 N -0.656 5.656 9 C 0.540 3.460 10 O -0.543 6.543 11 C 0.014 3.986 12 C -0.509 4.509 13 H 0.075 0.925 14 C 0.055 3.945 15 N -0.901 5.901 16 Si 0.902 3.098 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.112 3.888 21 C 0.022 3.978 22 C 0.091 3.909 23 H 0.103 0.897 24 C -0.176 4.176 25 O -0.380 6.380 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.262 0.738 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.043 0.957 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.141 0.961 20.830 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.089 0.911 4 C -0.105 4.105 5 N -0.247 5.247 6 C -0.070 4.070 7 C -0.001 4.001 8 N -0.395 5.395 9 C 0.334 3.666 10 O -0.419 6.419 11 C -0.025 4.025 12 C -0.548 4.548 13 H 0.093 0.907 14 C -0.146 4.146 15 N -0.540 5.540 16 Si 0.730 3.270 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.011 4.011 21 C -0.107 4.107 22 C 0.033 3.967 23 H 0.121 0.879 24 C -0.233 4.233 25 O -0.299 6.299 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.428 1.082 20.659 23.167 hybrid contribution 0.444 -0.856 -0.969 1.366 sum -9.985 0.227 19.690 22.078 Atomic orbital electron populations 1.21753 0.92901 1.02911 1.02683 1.22159 0.94621 0.96097 0.84267 0.91128 1.22832 0.87690 1.00420 0.99571 1.62389 1.08876 1.51938 1.01507 1.23848 0.95797 0.97069 0.90305 1.23032 0.85285 0.97280 0.94552 1.50163 1.23561 1.57992 1.07803 1.21849 0.81822 0.77923 0.85028 1.90547 1.23825 1.42237 1.85265 1.19184 0.99036 0.97507 0.86792 1.21184 1.06076 1.35109 0.92427 0.90715 1.25003 0.95937 0.95040 0.98570 1.69959 1.27202 1.38147 1.18731 0.86418 0.81987 0.77904 0.80730 1.20584 1.21219 1.19643 1.23006 0.93366 1.00731 0.84032 1.22788 1.01478 0.96067 0.90334 1.22244 0.80717 0.96523 0.97185 0.87881 1.22289 1.01366 0.96927 1.02767 1.88030 1.20802 1.78152 1.42910 0.91961 0.91669 0.90796 0.89296 0.93845 0.90407 0.90106 0.89380 0.93584 0.93484 0.92884 0.89961 0.90865 0.93869 0.89302 0.92510 0.91633 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.57 37.16 0.36 -0.66 16 2 C 0.09 0.75 3.02 -26.68 -0.08 0.67 16 3 H 0.07 0.62 6.50 -51.93 -0.34 0.28 16 4 C 0.02 0.21 4.92 -3.72 -0.02 0.19 16 5 N -0.52 -5.25 4.06 -228.23 -0.93 -6.17 16 6 C 0.04 0.46 3.39 -69.92 -0.24 0.22 16 7 C 0.12 1.71 8.33 -2.98 -0.02 1.69 16 8 N -0.66 -12.06 3.61 -178.54 -0.64 -12.70 16 9 C 0.54 12.99 8.05 -10.99 -0.09 12.90 16 10 O -0.54 -14.89 16.19 5.56 0.09 -14.80 16 11 C 0.01 0.37 5.21 -29.03 -0.15 0.21 16 12 C -0.51 -15.10 8.92 -34.44 -0.31 -15.41 16 13 H 0.07 2.31 6.75 -52.48 -0.35 1.96 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 16 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.11 1.60 7.37 -2.98 -0.02 1.58 16 21 C 0.02 0.20 4.85 -3.71 -0.02 0.18 16 22 C 0.09 0.78 3.92 -26.68 -0.10 0.68 16 23 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 24 C -0.18 -1.43 8.88 37.16 0.33 -1.10 16 25 O -0.38 -3.84 10.28 -35.23 -0.36 -4.20 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.76 8.10 -51.93 -0.42 0.33 16 30 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.08 1.09 7.85 -51.93 -0.41 0.69 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.77 6.96 -51.93 -0.36 0.41 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.68 6.13 -51.93 -0.32 0.36 16 LS Contribution 344.76 15.07 5.20 5.20 Total: -1.00 -33.57 344.76 -8.65 -42.22 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -7.25 Total: -3.63 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -0.46 Total: 2.65 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: -0.83 Total: -44.76 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.27 Total: -19.00 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.57 -8.65 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198940.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.856 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds