Wall clock time and date at job start Tue Mar 31 2020 05:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 109.50475 * 2 1 4 4 C 1.53096 * 109.50358 * 239.87143 * 2 1 3 5 5 N 1.47010 * 109.25656 * 183.21943 * 4 2 1 6 6 C 1.46902 * 111.00211 * 182.39413 * 5 4 2 7 7 C 1.53948 * 113.74490 * 155.10213 * 6 5 4 8 8 N 1.47811 * 86.03548 * 222.08080 * 7 6 5 9 9 C 1.34780 * 134.45931 * 204.64108 * 8 7 6 10 10 O 1.21284 * 120.00233 * 179.87090 * 9 8 7 11 11 C 1.50700 * 119.99593 * 359.87256 * 9 8 7 12 12 C 1.50700 * 109.46948 * 179.97438 * 11 9 8 13 13 H 1.07997 * 120.00299 * 359.97438 * 12 11 9 14 14 C 1.37877 * 120.00069 * 179.97438 * 12 11 9 15 15 N 1.31515 * 119.99770 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00337 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46935 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47678 * 119.99402 * 16 14 12 19 19 H 1.48497 * 109.47179 * 240.00091 * 16 14 12 20 20 C 1.47586 * 91.05182 * 24.54937 * 8 7 6 21 21 C 1.47008 * 110.75748 * 58.61279 * 5 4 2 22 22 C 1.53094 * 109.25592 * 301.38664 * 21 5 4 23 23 H 1.08997 * 109.51089 * 296.90618 * 22 21 5 24 24 C 1.53003 * 109.54211 * 176.80455 * 22 21 5 25 25 O 1.43008 * 109.25907 * 56.84929 * 22 21 5 26 26 H 1.09001 * 109.47002 * 299.91048 * 1 2 3 27 27 H 1.08993 * 109.46955 * 59.91486 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.91314 * 1 2 3 29 29 H 1.09002 * 109.50868 * 303.14953 * 4 2 1 30 30 H 1.09003 * 109.51030 * 63.27738 * 4 2 1 31 31 H 1.09007 * 112.94267 * 286.69581 * 6 5 4 32 32 H 1.08991 * 113.76967 * 336.34477 * 7 6 5 33 33 H 1.08996 * 113.76764 * 107.74613 * 7 6 5 34 34 H 1.08995 * 109.46968 * 299.99663 * 11 9 8 35 35 H 1.08991 * 109.47234 * 60.00133 * 11 9 8 36 36 H 0.97001 * 119.99782 * 179.97438 * 15 14 12 37 37 H 1.08998 * 113.76880 * 221.14851 * 20 8 7 38 38 H 1.08994 * 113.76959 * 89.75449 * 20 8 7 39 39 H 1.09006 * 109.50871 * 181.44981 * 21 5 4 40 40 H 1.09001 * 109.50450 * 61.32283 * 21 5 4 41 41 H 1.09004 * 109.46972 * 300.19948 * 24 22 21 42 42 H 1.09004 * 109.47364 * 60.19174 * 24 22 21 43 43 H 1.08994 * 109.47584 * 180.19600 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2481 5 7 3.5092 -0.7890 -1.2042 6 6 4.0446 -1.4278 -2.4138 7 6 5.4901 -1.0146 -2.7451 8 7 5.0383 -0.9411 -4.1505 9 6 5.6524 -1.0413 -5.3460 10 8 5.0089 -0.9388 -6.3689 11 6 7.1389 -1.2806 -5.4117 12 6 7.5728 -1.3527 -6.8531 13 1 6.8450 -1.2372 -7.6426 14 6 8.8990 -1.5661 -7.1639 15 7 9.7854 -1.7063 -6.2025 16 14 9.4371 -1.6548 -8.9505 17 1 8.2573 -1.4670 -9.8327 18 1 10.4329 -0.5870 -9.2213 19 1 10.0485 -2.9813 -9.2181 20 6 3.6448 -0.7163 -3.7192 21 6 3.9639 -1.4884 0.0062 22 6 3.4335 -0.7564 1.2418 23 1 3.8535 0.2488 1.2776 24 6 3.8359 -1.5232 2.5031 25 8 2.0077 -0.6759 1.1664 26 1 -0.3633 0.5124 0.8908 27 1 -0.3633 0.5151 -0.8892 28 1 -0.3633 -1.0277 -0.0016 29 1 1.6331 -1.7347 -1.2754 30 1 1.7272 -0.1803 -2.1390 31 1 3.8807 -2.5053 -2.4334 32 1 5.7787 -0.0511 -2.3254 33 1 6.2245 -1.7983 -2.5590 34 1 7.6608 -0.4627 -4.9152 35 1 7.3780 -2.2199 -4.9133 36 1 10.7184 -1.8568 -6.4212 37 1 2.9088 -1.2621 -4.3095 38 1 3.3903 0.3351 -3.5863 39 1 5.0536 -1.5021 0.0311 40 1 3.5866 -2.5110 -0.0009 41 1 3.4170 -2.5289 2.4660 42 1 4.9227 -1.5844 2.5600 43 1 3.4547 -1.0030 3.3818 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143198941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:54 Heat of formation + Delta-G solvation = -45.945847 kcal Electronic energy + Delta-G solvation = -22501.222176 eV Core-core repulsion = 19161.562605 eV Total energy + Delta-G solvation = -3339.659571 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.46540 -39.20531 -37.18907 -34.76679 -33.99517 -32.92727 -30.57312 -29.53425 -27.83932 -27.30871 -25.64780 -24.76819 -23.10234 -22.16205 -20.70052 -20.39221 -18.48394 -16.83980 -16.70399 -16.51058 -15.96105 -15.68892 -15.51742 -14.91898 -14.79744 -14.35993 -14.05292 -13.77797 -13.12084 -12.94789 -12.78832 -12.53580 -12.47782 -12.34566 -12.27286 -12.17865 -12.02399 -11.91443 -11.70688 -11.23943 -11.16982 -10.74712 -10.66906 -10.64341 -10.58644 -9.95577 -9.78409 -9.25096 -8.69358 -8.64370 -8.44825 -8.15565 -6.06411 -4.06016 3.21054 3.33213 3.39773 3.40730 3.49114 3.53591 3.82502 4.18713 4.47590 4.56131 4.64361 4.77890 4.87316 4.89561 5.00373 5.09321 5.17446 5.19795 5.26750 5.31606 5.32901 5.40572 5.45915 5.55352 5.63354 5.65841 5.67104 5.73391 5.80796 5.81607 5.85471 5.89778 6.04232 6.62145 6.68208 6.80637 7.00495 7.19973 7.32821 7.96045 8.11802 8.43916 9.04947 9.19081 9.59004 11.06049 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034202 B = 0.003151 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.465632 B = 8884.971644 C = 9589.639745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.091 3.909 3 H 0.067 0.933 4 C 0.022 3.978 5 N -0.526 5.526 6 C 0.039 3.961 7 C 0.122 3.878 8 N -0.656 5.656 9 C 0.540 3.460 10 O -0.543 6.543 11 C 0.014 3.986 12 C -0.508 4.508 13 H 0.075 0.925 14 C 0.055 3.945 15 N -0.901 5.901 16 Si 0.901 3.099 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.113 3.887 21 C 0.023 3.977 22 C 0.091 3.909 23 H 0.067 0.933 24 C -0.144 4.144 25 O -0.382 6.382 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.261 0.739 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.771 1.718 18.976 24.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.033 3.967 3 H 0.085 0.915 4 C -0.106 4.106 5 N -0.251 5.251 6 C -0.070 4.070 7 C -0.002 4.002 8 N -0.396 5.396 9 C 0.334 3.666 10 O -0.419 6.419 11 C -0.025 4.025 12 C -0.547 4.547 13 H 0.093 0.907 14 C -0.146 4.146 15 N -0.540 5.540 16 Si 0.729 3.271 17 H -0.195 1.195 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.011 4.011 21 C -0.105 4.105 22 C 0.033 3.967 23 H 0.085 0.915 24 C -0.202 4.202 25 O -0.302 6.302 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.751 2.121 18.342 23.633 hybrid contribution 0.333 -0.788 -1.052 1.356 sum -14.418 1.333 17.290 22.552 Atomic orbital electron populations 1.21749 0.92818 1.02943 1.02686 1.22127 0.94720 0.95674 0.84188 0.91498 1.22818 0.87814 1.00418 0.99546 1.62393 1.08836 1.52210 1.01679 1.23843 0.96938 0.97264 0.88950 1.23076 0.94913 1.01787 0.80400 1.50222 1.09122 1.74644 1.05576 1.21853 0.91819 0.73251 0.79708 1.90548 1.67676 1.50440 1.33199 1.19185 0.84263 0.99002 1.00095 1.21225 0.93524 1.48610 0.91335 0.90655 1.25010 0.96482 0.95214 0.97900 1.69973 1.02314 1.49953 1.31800 0.86369 0.78574 0.77512 0.84655 1.19458 1.20956 1.20977 1.22999 0.86895 1.00113 0.91073 1.22833 1.01527 0.96213 0.89966 1.22131 0.81165 0.99173 0.94256 0.91469 1.21749 1.01570 1.00655 0.96215 1.87971 1.21013 1.78474 1.42746 0.91610 0.90822 0.91911 0.93815 0.89357 0.90439 0.89334 0.90043 0.93481 0.93581 0.92944 0.90828 0.89930 0.89218 0.93803 0.91926 0.90735 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.57 37.16 0.36 -0.67 16 2 C 0.09 0.81 3.43 -26.68 -0.09 0.72 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 4 C 0.02 0.21 4.75 -3.71 -0.02 0.19 16 5 N -0.53 -5.52 4.69 -228.22 -1.07 -6.59 16 6 C 0.04 0.47 3.37 -69.92 -0.24 0.23 16 7 C 0.12 1.73 8.25 -2.84 -0.02 1.70 16 8 N -0.66 -12.16 3.61 -178.33 -0.64 -12.80 16 9 C 0.54 13.03 8.05 -10.98 -0.09 12.94 16 10 O -0.54 -14.92 16.19 5.55 0.09 -14.83 16 11 C 0.01 0.36 5.21 -29.03 -0.15 0.21 16 12 C -0.51 -15.09 8.92 -34.44 -0.31 -15.39 16 13 H 0.08 2.34 6.75 -52.49 -0.35 1.98 16 14 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 16 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 17 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 20 C 0.11 1.63 7.41 -2.96 -0.02 1.61 16 21 C 0.02 0.21 4.91 -3.72 -0.02 0.20 16 22 C 0.09 0.81 3.42 -26.68 -0.09 0.72 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 24 C -0.14 -1.02 9.57 37.16 0.36 -0.67 16 25 O -0.38 -3.95 10.11 -35.23 -0.36 -4.31 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.79 7.08 -51.93 -0.37 0.42 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.08 1.12 7.95 -51.93 -0.41 0.70 16 39 H 0.09 0.78 8.02 -51.93 -0.42 0.36 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 349.43 15.07 5.27 5.27 Total: -1.00 -33.79 349.43 -8.88 -42.68 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -7.45 Total: -4.12 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -0.43 Total: 3.28 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -0.98 Total: -45.30 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.27 Total: -19.14 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.79 -8.88 -42.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.269 kcal (2) G-P(sol) polarization free energy of solvation -33.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds