Wall clock time and date at job start Tue Mar 31 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47220 * 2 1 4 4 C 1.36935 * 120.00288 * 275.24591 * 3 2 1 5 5 H 1.08005 * 119.99657 * 26.66266 * 4 3 2 6 6 C 1.38805 * 120.00417 * 206.67043 * 4 3 2 7 7 N 1.31622 * 119.99968 * 24.73643 * 6 4 3 8 8 Si 1.86807 * 120.00196 * 204.73792 * 6 4 3 9 9 H 1.48499 * 109.46739 * 84.99419 * 8 6 4 10 10 H 1.48498 * 109.47110 * 204.99307 * 8 6 4 11 11 H 1.48497 * 109.46847 * 324.99388 * 8 6 4 12 12 C 1.46503 * 119.99907 * 95.24973 * 3 2 1 13 13 H 1.09001 * 109.46747 * 179.97438 * 12 3 2 14 14 C 1.52997 * 109.47383 * 59.99784 * 12 3 2 15 15 C 1.53004 * 109.46976 * 299.99786 * 12 3 2 16 16 N 1.46498 * 109.47038 * 305.00206 * 15 12 3 17 17 C 1.34776 * 120.00009 * 180.02562 * 16 15 12 18 18 O 1.21736 * 119.99874 * 359.97438 * 17 16 15 19 19 C 1.41795 * 120.00066 * 180.02562 * 17 16 15 20 20 C 1.33458 * 118.78588 * 179.73074 * 19 17 16 21 21 O 1.34351 * 123.08117 * 180.10815 * 20 19 17 22 22 C 1.45361 * 117.54619 * 344.21962 * 21 20 19 23 23 C 1.53492 * 108.26151 * 47.22377 * 22 21 20 24 24 C 1.50418 * 118.78675 * 359.97438 * 19 17 16 25 25 H 1.08997 * 109.46783 * 300.00129 * 1 2 3 26 26 H 1.08999 * 109.47273 * 59.99648 * 1 2 3 27 27 H 1.09002 * 109.47379 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46783 * 239.99871 * 2 1 3 29 29 H 1.08999 * 109.47273 * 120.00352 * 2 1 3 30 30 H 0.97003 * 119.99624 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47019 * 59.99556 * 14 12 3 32 32 H 1.08996 * 109.47521 * 180.02562 * 14 12 3 33 33 H 1.09000 * 109.46863 * 300.00443 * 14 12 3 34 34 H 1.09000 * 109.46721 * 64.99800 * 15 12 3 35 35 H 1.08996 * 109.47172 * 185.00055 * 15 12 3 36 36 H 0.97004 * 120.00336 * 359.97438 * 16 15 12 37 37 H 1.07998 * 118.46193 * 0.39189 * 20 19 17 38 38 H 1.09001 * 109.70544 * 287.53748 * 22 21 20 39 39 H 1.08998 * 109.74112 * 166.92999 * 22 21 20 40 40 H 1.08998 * 109.70043 * 177.61151 * 23 22 21 41 41 H 1.08991 * 109.70429 * 56.98679 * 23 22 21 42 42 H 1.08998 * 109.45695 * 282.35908 * 24 19 17 43 43 H 1.09000 * 109.45608 * 42.32588 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1444 2.0629 -1.1809 5 1 1.5227 1.8013 -2.0244 6 6 3.0712 3.0900 -1.2939 7 7 4.1289 3.1111 -0.5108 8 14 2.8174 4.4423 -2.5575 9 1 1.9353 5.4924 -1.9880 10 1 4.1297 5.0384 -2.9149 11 1 2.1855 3.8709 -3.7738 12 6 2.3720 2.0331 1.2634 13 1 2.7124 3.0493 1.0650 14 6 3.4907 1.2454 1.9481 15 6 1.1450 2.0748 2.1766 16 7 0.0356 2.7246 1.4745 17 6 -1.1548 2.8747 2.0883 18 8 -1.3082 2.4699 3.2261 19 6 -2.2288 3.5032 1.4085 20 6 -3.3986 3.6343 2.0374 21 8 -4.4728 4.2129 1.4749 22 6 -4.2567 5.0162 0.2829 23 6 -3.3628 4.2201 -0.6780 24 6 -2.0093 3.9925 0.0032 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.7764 3.8291 -0.5896 31 1 4.3648 1.2156 1.2975 32 1 3.7535 1.7302 2.8883 33 1 3.1507 0.2290 2.1464 34 1 0.8585 1.0584 2.4468 35 1 1.3830 2.6374 3.0794 36 1 0.1579 3.0475 0.5680 37 1 -3.4846 3.2617 3.0474 38 1 -3.7647 5.9505 0.5534 39 1 -5.2124 5.2292 -0.1958 40 1 -3.2201 4.7843 -1.5996 41 1 -3.8277 3.2601 -0.9022 42 1 -1.4529 4.9295 0.0278 43 1 -1.4425 3.2482 -0.5560 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152399349.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:32 Heat of formation + Delta-G solvation = -45.254642 kcal Electronic energy + Delta-G solvation = -23872.365390 eV Core-core repulsion = 20532.735792 eV Total energy + Delta-G solvation = -3339.629598 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.41881 -38.83300 -36.89834 -34.25233 -33.40898 -31.90335 -31.60093 -30.84575 -28.18687 -25.96505 -25.65155 -23.95191 -23.51593 -21.68841 -20.84731 -19.28650 -18.58223 -17.70788 -16.87926 -16.27372 -15.65778 -15.08422 -15.05581 -14.70603 -14.33842 -14.13299 -13.83753 -13.57399 -13.24480 -12.80676 -12.74798 -12.65601 -12.28345 -12.01307 -11.82006 -11.50607 -11.30700 -11.09911 -10.98513 -10.97572 -10.80149 -10.68945 -10.63538 -10.30788 -10.01924 -9.63758 -9.44724 -9.34763 -8.53459 -8.47096 -8.14061 -6.78213 -5.90816 -3.28569 1.61691 3.19049 3.29007 3.37783 3.39326 3.81450 4.07841 4.41623 4.61865 4.68075 4.86320 5.13603 5.21046 5.21360 5.37227 5.39505 5.56926 5.63172 5.91113 5.94626 6.03926 6.06509 6.20733 6.23079 6.28240 6.33470 6.40540 6.51645 6.56002 6.64088 6.69262 6.83487 6.91155 7.16761 7.18271 7.27444 7.49331 7.56071 7.76089 8.29237 8.37439 8.88061 9.13166 9.78264 10.32674 11.16189 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.006521 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.984593 B = 4292.632929 C = 5274.384349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 N -0.583 5.583 4 C -0.260 4.260 5 H 0.067 0.933 6 C 0.007 3.993 7 N -0.887 5.887 8 Si 0.889 3.111 9 H -0.287 1.287 10 H -0.292 1.292 11 H -0.280 1.280 12 C 0.171 3.829 13 H 0.104 0.896 14 C -0.144 4.144 15 C 0.103 3.897 16 N -0.698 5.698 17 C 0.560 3.440 18 O -0.580 6.580 19 C -0.300 4.300 20 C 0.141 3.859 21 O -0.316 6.316 22 C 0.053 3.947 23 C -0.155 4.155 24 C -0.079 4.079 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.032 0.968 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.254 0.746 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.410 0.590 37 H 0.178 0.822 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.967 2.497 1.091 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.389 4.389 5 H 0.085 0.915 6 C -0.192 4.192 7 N -0.529 5.529 8 Si 0.719 3.281 9 H -0.214 1.214 10 H -0.219 1.219 11 H -0.205 1.205 12 C 0.064 3.936 13 H 0.121 0.879 14 C -0.203 4.203 15 C -0.023 4.023 16 N -0.349 5.349 17 C 0.351 3.649 18 O -0.464 6.464 19 C -0.304 4.304 20 C 0.073 3.927 21 O -0.227 6.227 22 C -0.021 4.021 23 C -0.193 4.193 24 C -0.116 4.116 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.248 0.752 37 H 0.194 0.806 38 H 0.090 0.910 39 H 0.123 0.877 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.081 2.318 1.886 12.445 hybrid contribution 0.325 0.897 -1.279 1.595 sum -11.756 3.214 0.607 12.203 Atomic orbital electron populations 1.22454 0.99909 0.98974 1.01659 1.20738 0.91808 0.87303 0.98730 1.43961 1.75735 1.08476 1.02235 1.19116 1.14964 1.13200 0.91665 0.91547 1.24933 0.94578 1.01442 0.98286 1.70101 1.09109 1.32237 1.41501 0.86504 0.77180 0.82912 0.81482 1.21364 1.21874 1.20495 1.20573 0.89121 0.99776 0.84144 0.87880 1.22004 1.01018 0.98098 0.99196 1.22100 0.88350 0.96288 0.95535 1.45915 1.10865 1.59026 1.19063 1.16599 0.83099 0.79363 0.85886 1.90742 1.83779 1.53062 1.18864 1.20171 0.96899 1.14287 0.99065 1.22871 0.84888 0.88705 0.96217 1.86228 1.32272 1.61860 1.42338 1.23522 1.01379 0.93039 0.84150 1.22180 0.96447 1.01704 0.98952 1.20325 0.97139 1.02164 0.91983 0.92747 0.93536 0.94911 0.94161 0.94464 0.93578 0.90664 0.94723 0.95074 0.92927 0.93088 0.75196 0.80560 0.91027 0.87678 0.89620 0.90409 0.90691 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.85 37.16 0.37 -2.75 16 2 C 0.14 2.84 5.69 -4.04 -0.02 2.82 16 3 N -0.58 -13.06 1.88 -165.67 -0.31 -13.37 16 4 C -0.26 -6.40 9.28 -15.06 -0.14 -6.54 16 5 H 0.07 1.65 7.94 -52.48 -0.42 1.23 16 6 C 0.01 0.19 4.71 -17.43 -0.08 0.11 16 7 N -0.89 -23.50 10.91 55.49 0.61 -22.90 16 8 Si 0.89 19.98 29.62 -169.99 -5.04 14.94 16 9 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 C 0.17 3.71 1.97 -67.93 -0.13 3.57 16 13 H 0.10 2.54 5.76 -51.93 -0.30 2.24 16 14 C -0.14 -2.96 9.08 37.16 0.34 -2.62 16 15 C 0.10 2.05 4.33 -4.04 -0.02 2.03 16 16 N -0.70 -13.24 3.91 -63.18 -0.25 -13.48 16 17 C 0.56 10.41 7.30 -14.90 -0.11 10.30 16 18 O -0.58 -12.26 15.92 5.16 0.08 -12.18 16 19 C -0.30 -4.59 5.70 -105.07 -0.60 -5.19 16 20 C 0.14 1.95 10.47 29.06 0.30 2.25 16 21 O -0.32 -3.87 10.47 -14.89 -0.16 -4.03 16 22 C 0.05 0.50 7.16 37.41 0.27 0.77 16 23 C -0.16 -1.61 6.23 -26.36 -0.16 -1.77 16 24 C -0.08 -1.06 5.08 -27.90 -0.14 -1.20 16 25 H 0.05 1.04 4.95 -51.93 -0.26 0.78 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 29 H 0.04 0.73 6.44 -51.93 -0.33 0.39 16 30 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.07 1.74 7.69 -51.93 -0.40 1.34 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.03 0.59 6.66 -51.93 -0.35 0.25 16 34 H 0.05 1.07 7.01 -51.93 -0.36 0.71 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.41 7.93 6.00 -40.82 -0.24 7.68 16 37 H 0.18 2.42 7.21 -52.49 -0.38 2.04 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.09 1.30 7.15 -51.93 -0.37 0.93 16 LS Contribution 337.35 15.07 5.08 5.08 Total: -1.00 -27.99 337.35 -6.88 -34.87 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.77 Total: 9.28 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -0.13 Total: 1.77 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.05 Total: -49.75 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.07 Total: -16.21 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.04 Total: 14.94 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.99 -6.88 -34.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152399349.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.382 kcal (2) G-P(sol) polarization free energy of solvation -27.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds