Wall clock time and date at job start Tue Mar 31 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47220 * 2 1 4 4 C 1.36935 * 120.00288 * 275.24591 * 3 2 1 5 5 H 1.08005 * 119.99657 * 26.66266 * 4 3 2 6 6 C 1.38805 * 120.00417 * 206.67043 * 4 3 2 7 7 N 1.31622 * 119.99968 * 24.73643 * 6 4 3 8 8 Si 1.86807 * 120.00196 * 204.73792 * 6 4 3 9 9 H 1.48499 * 109.46739 * 84.99419 * 8 6 4 10 10 H 1.48498 * 109.47110 * 204.99307 * 8 6 4 11 11 H 1.48497 * 109.46847 * 324.99388 * 8 6 4 12 12 C 1.46503 * 119.99907 * 95.24973 * 3 2 1 13 13 H 1.09001 * 109.46747 * 179.97438 * 12 3 2 14 14 C 1.52997 * 109.47383 * 59.99784 * 12 3 2 15 15 C 1.53004 * 109.46976 * 299.99786 * 12 3 2 16 16 N 1.46498 * 109.47038 * 305.00206 * 15 12 3 17 17 C 1.34776 * 120.00009 * 180.02562 * 16 15 12 18 18 O 1.21736 * 119.99874 * 359.97438 * 17 16 15 19 19 C 1.41795 * 120.00066 * 180.02562 * 17 16 15 20 20 C 1.33458 * 118.78588 * 179.73074 * 19 17 16 21 21 O 1.34351 * 123.08117 * 180.10815 * 20 19 17 22 22 C 1.45361 * 117.54619 * 344.21962 * 21 20 19 23 23 C 1.53492 * 108.26151 * 47.22377 * 22 21 20 24 24 C 1.50418 * 118.78675 * 359.97438 * 19 17 16 25 25 H 1.08997 * 109.46783 * 300.00129 * 1 2 3 26 26 H 1.08999 * 109.47273 * 59.99648 * 1 2 3 27 27 H 1.09002 * 109.47379 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46783 * 239.99871 * 2 1 3 29 29 H 1.08999 * 109.47273 * 120.00352 * 2 1 3 30 30 H 0.97003 * 119.99624 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47019 * 59.99556 * 14 12 3 32 32 H 1.08996 * 109.47521 * 180.02562 * 14 12 3 33 33 H 1.09000 * 109.46863 * 300.00443 * 14 12 3 34 34 H 1.09000 * 109.46721 * 64.99800 * 15 12 3 35 35 H 1.08996 * 109.47172 * 185.00055 * 15 12 3 36 36 H 0.97004 * 120.00336 * 359.97438 * 16 15 12 37 37 H 1.07998 * 118.46193 * 0.39189 * 20 19 17 38 38 H 1.09001 * 109.70544 * 287.53748 * 22 21 20 39 39 H 1.08998 * 109.74112 * 166.92999 * 22 21 20 40 40 H 1.08998 * 109.70043 * 177.61151 * 23 22 21 41 41 H 1.08991 * 109.70429 * 56.98679 * 23 22 21 42 42 H 1.08998 * 109.45695 * 282.35908 * 24 19 17 43 43 H 1.09000 * 109.45608 * 42.32588 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1444 2.0629 -1.1809 5 1 1.5227 1.8013 -2.0244 6 6 3.0712 3.0900 -1.2939 7 7 4.1289 3.1111 -0.5108 8 14 2.8174 4.4423 -2.5575 9 1 1.9353 5.4924 -1.9880 10 1 4.1297 5.0384 -2.9149 11 1 2.1855 3.8709 -3.7738 12 6 2.3720 2.0331 1.2634 13 1 2.7124 3.0493 1.0650 14 6 3.4907 1.2454 1.9481 15 6 1.1450 2.0748 2.1766 16 7 0.0356 2.7246 1.4745 17 6 -1.1548 2.8747 2.0883 18 8 -1.3082 2.4699 3.2261 19 6 -2.2288 3.5032 1.4085 20 6 -3.3986 3.6343 2.0374 21 8 -4.4728 4.2129 1.4749 22 6 -4.2567 5.0162 0.2829 23 6 -3.3628 4.2201 -0.6780 24 6 -2.0093 3.9925 0.0032 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.7764 3.8291 -0.5896 31 1 4.3648 1.2156 1.2975 32 1 3.7535 1.7302 2.8883 33 1 3.1507 0.2290 2.1464 34 1 0.8585 1.0584 2.4468 35 1 1.3830 2.6374 3.0794 36 1 0.1579 3.0475 0.5680 37 1 -3.4846 3.2617 3.0474 38 1 -3.7647 5.9505 0.5534 39 1 -5.2124 5.2292 -0.1958 40 1 -3.2201 4.7843 -1.5996 41 1 -3.8277 3.2601 -0.9022 42 1 -1.4529 4.9295 0.0278 43 1 -1.4425 3.2482 -0.5560 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152399349.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:32 Heat of formation + Delta-G solvation = -61.118878 kcal Electronic energy + Delta-G solvation = -23873.053315 eV Core-core repulsion = 20532.735792 eV Total energy + Delta-G solvation = -3340.317523 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.59043 -40.14934 -38.58295 -35.48936 -34.85763 -33.71562 -32.79589 -32.31014 -29.94459 -27.41878 -26.65311 -25.78849 -24.68963 -23.31272 -22.10227 -21.01789 -19.74421 -19.00007 -18.53819 -17.53414 -16.81256 -16.71764 -16.45459 -16.18499 -15.85919 -15.50892 -15.15494 -14.94479 -14.37234 -14.33284 -14.07332 -13.93350 -13.88822 -13.52304 -13.46446 -13.16304 -12.80566 -12.74200 -12.52684 -12.42394 -12.21998 -12.06446 -11.81489 -11.80392 -11.60293 -11.37193 -11.18527 -10.81515 -10.37788 -9.94045 -9.41206 -8.63406 -7.82940 -5.21970 0.42457 1.50125 1.54010 1.59830 2.21791 2.44015 2.55780 2.67201 3.29011 3.65004 3.74279 3.78995 3.95562 4.20590 4.25440 4.31534 4.43050 4.46423 4.57414 4.59207 4.69149 4.73415 4.80653 4.88709 4.92336 4.95325 4.99280 5.05386 5.13178 5.19458 5.21454 5.25044 5.31670 5.55277 5.62915 5.69681 5.78267 5.86114 6.23774 6.46062 6.80708 7.22245 7.40442 7.94416 8.44575 9.21869 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.006521 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.984593 B = 4292.632929 C = 5274.384349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.139 3.861 3 N -0.590 5.590 4 C -0.258 4.258 5 H 0.064 0.936 6 C -0.036 4.036 7 N -0.913 5.913 8 Si 0.945 3.055 9 H -0.280 1.280 10 H -0.305 1.305 11 H -0.273 1.273 12 C 0.177 3.823 13 H 0.074 0.926 14 C -0.134 4.134 15 C 0.116 3.884 16 N -0.699 5.699 17 C 0.560 3.440 18 O -0.612 6.612 19 C -0.325 4.325 20 C 0.168 3.832 21 O -0.316 6.316 22 C 0.049 3.951 23 C -0.150 4.150 24 C -0.077 4.077 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.033 0.967 29 H 0.044 0.956 30 H 0.248 0.752 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.409 0.591 37 H 0.176 0.824 38 H 0.081 0.919 39 H 0.139 0.861 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.131 2.990 0.479 14.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.013 3.987 3 N -0.312 5.312 4 C -0.388 4.388 5 H 0.082 0.918 6 C -0.233 4.233 7 N -0.558 5.558 8 Si 0.775 3.225 9 H -0.207 1.207 10 H -0.232 1.232 11 H -0.198 1.198 12 C 0.070 3.930 13 H 0.092 0.908 14 C -0.194 4.194 15 C -0.010 4.010 16 N -0.349 5.349 17 C 0.352 3.648 18 O -0.498 6.498 19 C -0.329 4.329 20 C 0.099 3.901 21 O -0.227 6.227 22 C -0.024 4.024 23 C -0.187 4.187 24 C -0.114 4.114 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.246 0.754 37 H 0.193 0.807 38 H 0.099 0.901 39 H 0.157 0.843 40 H 0.126 0.874 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.279 2.806 1.257 14.607 hybrid contribution 0.926 0.716 -1.080 1.592 sum -13.354 3.523 0.177 13.812 Atomic orbital electron populations 1.22259 0.98107 1.00184 1.00883 1.20826 0.93046 0.86126 0.98696 1.44070 1.75830 1.09355 1.01935 1.19265 1.14128 1.13199 0.92195 0.91843 1.25498 0.94511 1.03121 1.00137 1.70227 1.09825 1.32495 1.43235 0.85622 0.76315 0.80741 0.79855 1.20692 1.23223 1.19843 1.20423 0.90020 0.98282 0.84300 0.90787 1.21868 0.99457 0.98921 0.99129 1.21841 0.87961 0.96214 0.94999 1.45874 1.10943 1.59173 1.18897 1.17026 0.83419 0.78807 0.85529 1.90716 1.84254 1.54638 1.20215 1.20060 0.96429 1.16209 1.00223 1.22858 0.84526 0.86813 0.95875 1.86241 1.31462 1.61558 1.43390 1.23870 1.03188 0.92562 0.82824 1.22179 0.94586 1.02212 0.99731 1.20292 0.98889 1.01296 0.90950 0.93666 0.94055 0.92671 0.94848 0.93790 0.94302 0.93545 0.93124 0.93780 0.93200 0.93205 0.75389 0.80721 0.90051 0.84304 0.87419 0.90599 0.90963 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.48 9.85 71.98 0.71 -4.77 16 2 C 0.14 5.52 5.69 86.38 0.49 6.01 16 3 N -0.59 -26.50 1.88 -678.05 -1.27 -27.77 16 4 C -0.26 -12.72 9.28 84.03 0.78 -11.94 16 5 H 0.06 3.13 7.94 -2.91 -0.02 3.11 16 6 C -0.04 -1.80 4.71 84.86 0.40 -1.41 16 7 N -0.91 -49.35 10.91 21.65 0.24 -49.12 16 8 Si 0.95 41.25 29.62 68.60 2.03 43.28 16 9 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 12 C 0.18 7.73 1.97 44.99 0.09 7.82 16 13 H 0.07 3.72 5.76 -2.39 -0.01 3.71 16 14 C -0.13 -5.54 9.08 71.98 0.65 -4.89 16 15 C 0.12 4.62 4.33 86.38 0.37 4.99 16 16 N -0.70 -26.57 3.91 -471.99 -1.84 -28.41 16 17 C 0.56 20.69 7.30 85.12 0.62 21.31 16 18 O -0.61 -25.80 15.92 -4.46 -0.07 -25.88 16 19 C -0.32 -9.64 5.70 -20.16 -0.11 -9.75 16 20 C 0.17 4.37 10.47 66.74 0.70 5.07 16 21 O -0.32 -6.84 10.47 -76.20 -0.80 -7.64 16 22 C 0.05 0.75 7.16 72.15 0.52 1.26 16 23 C -0.15 -2.67 6.23 30.84 0.19 -2.48 16 24 C -0.08 -1.97 5.08 29.84 0.15 -1.82 16 25 H 0.04 1.68 4.95 -2.39 -0.01 1.67 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 29 H 0.04 1.68 6.44 -2.39 -0.02 1.66 16 30 H 0.25 13.24 8.31 -92.71 -0.77 12.47 16 31 H 0.05 2.17 7.69 -2.39 -0.02 2.16 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.04 1.66 6.66 -2.39 -0.02 1.64 16 34 H 0.05 2.01 7.01 -2.39 -0.02 1.99 16 35 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.41 15.89 6.00 -92.71 -0.56 15.33 16 37 H 0.18 4.59 7.21 -2.91 -0.02 4.57 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.07 2.03 7.15 -2.39 -0.02 2.01 16 Total: -1.00 -59.90 337.35 4.29 -55.61 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.45 Total: 30.53 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 5.56 Total: 9.40 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -2.88 Total: -105.30 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -0.87 Total: -33.52 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -59.90 4.29 -55.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152399349.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.511 kcal (2) G-P(sol) polarization free energy of solvation -59.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds