Wall clock time and date at job start Tue Mar 31 2020 06:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47047 * 2 1 4 4 C 1.36937 * 120.00549 * 275.90569 * 3 2 1 5 5 H 1.08004 * 120.00098 * 34.12131 * 4 3 2 6 6 C 1.38807 * 120.00412 * 214.13088 * 4 3 2 7 7 N 1.31624 * 120.00189 * 16.94044 * 6 4 3 8 8 Si 1.86799 * 120.00160 * 196.94743 * 6 4 3 9 9 H 1.48502 * 109.47133 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47527 * 119.99745 * 8 6 4 11 11 H 1.48504 * 109.47112 * 239.99681 * 8 6 4 12 12 C 1.46501 * 120.00112 * 95.90928 * 3 2 1 13 13 H 1.09000 * 109.47576 * 177.15108 * 12 3 2 14 14 C 1.52995 * 109.47388 * 57.14198 * 12 3 2 15 15 C 1.53012 * 109.46589 * 297.14933 * 12 3 2 16 16 N 1.46504 * 109.46917 * 304.99714 * 15 12 3 17 17 C 1.34769 * 119.99776 * 180.02562 * 16 15 12 18 18 O 1.21615 * 120.00323 * 359.97438 * 17 16 15 19 19 C 1.47105 * 120.00038 * 180.02562 * 17 16 15 20 20 C 1.32089 * 118.87493 * 179.73391 * 19 17 16 21 21 C 1.50271 * 122.57617 * 180.10411 * 20 19 17 22 22 O 1.42890 * 110.14754 * 344.83414 * 21 20 19 23 23 C 1.43270 * 113.10286 * 50.31452 * 22 21 20 24 24 C 1.50412 * 118.87633 * 359.97438 * 19 17 16 25 25 H 1.09005 * 109.46606 * 299.99777 * 1 2 3 26 26 H 1.09002 * 109.47581 * 59.99388 * 1 2 3 27 27 H 1.08998 * 109.47231 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46949 * 240.00575 * 2 1 3 29 29 H 1.08996 * 109.47205 * 120.00387 * 2 1 3 30 30 H 0.97001 * 120.00294 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.46596 * 60.00456 * 14 12 3 32 32 H 1.09000 * 109.47606 * 180.02562 * 14 12 3 33 33 H 1.09000 * 109.47505 * 300.00953 * 14 12 3 34 34 H 1.08998 * 109.47120 * 64.99802 * 15 12 3 35 35 H 1.08995 * 109.46540 * 184.99924 * 15 12 3 36 36 H 0.97003 * 119.99901 * 0.02562 * 16 15 12 37 37 H 1.07991 * 118.71288 * 0.36375 * 20 19 17 38 38 H 1.09000 * 109.50813 * 224.51793 * 21 20 19 39 39 H 1.09002 * 109.06545 * 104.86635 * 21 20 19 40 40 H 1.08999 * 109.64302 * 171.47527 * 23 22 21 41 41 H 1.09001 * 109.64022 * 50.85752 * 23 22 21 42 42 H 1.09010 * 109.45639 * 283.38005 * 24 19 17 43 43 H 1.08999 * 109.45534 * 43.31093 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1315 2.0675 -1.1795 5 1 1.4231 1.8932 -1.9759 6 6 3.1569 2.9871 -1.3519 7 7 4.1991 2.9691 -0.5482 8 14 3.0577 4.2504 -2.7244 9 1 1.7945 4.0604 -3.4817 10 1 3.0860 5.6165 -2.1428 11 1 4.2140 4.0782 -3.6401 12 6 2.3856 2.0283 1.2620 13 1 2.7711 3.0275 1.0593 14 6 3.4619 1.1995 1.9658 15 6 1.1515 2.1304 2.1608 16 7 0.0788 2.8210 1.4407 17 6 -1.1108 3.0272 2.0397 18 8 -1.2939 2.6395 3.1778 19 6 -2.1882 3.7201 1.3165 20 6 -3.3469 3.9056 1.9230 21 6 -4.5039 4.6003 1.2621 22 8 -4.0579 5.3025 0.1003 23 6 -3.2685 4.4915 -0.7782 24 6 -1.9345 4.1884 -0.0902 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 4.9155 3.6119 -0.6684 31 1 4.3410 1.1267 1.3255 32 1 3.7349 1.6806 2.9050 33 1 3.0764 0.2002 2.1685 34 1 0.8187 1.1296 2.4360 35 1 1.4035 2.6900 3.0615 36 1 0.2247 3.1299 0.5328 37 1 -3.4660 3.5476 2.9348 38 1 -4.9521 5.3063 1.9613 39 1 -5.2469 3.8574 0.9724 40 1 -3.0867 5.0291 -1.7088 41 1 -3.7935 3.5593 -0.9868 42 1 -1.3239 5.0912 -0.0678 43 1 -1.4097 3.4093 -0.6431 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152912959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:30 Heat of formation + Delta-G solvation = -52.567137 kcal Electronic energy + Delta-G solvation = -23756.504556 eV Core-core repulsion = 20416.557864 eV Total energy + Delta-G solvation = -3339.946692 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.96987 -38.57847 -36.91716 -33.82924 -33.52834 -31.92905 -31.27887 -30.80263 -28.22860 -26.64381 -25.04247 -23.97233 -23.60164 -21.74641 -20.79778 -19.32852 -18.15941 -17.49666 -16.84536 -16.36476 -15.42846 -15.23089 -15.19722 -14.74538 -14.54795 -14.10984 -13.69727 -13.49947 -13.17124 -12.77048 -12.69489 -12.51150 -12.35050 -12.07457 -11.85683 -11.55673 -11.50519 -11.11012 -10.99330 -10.86526 -10.82552 -10.69312 -10.30580 -10.10411 -10.03703 -9.68143 -9.46959 -9.32427 -9.06907 -8.56187 -8.37188 -6.69439 -5.92300 -3.42594 1.48870 3.26977 3.36398 3.37658 3.60373 3.64468 3.91225 4.37623 4.71303 4.84434 4.86375 5.15898 5.20410 5.22677 5.27212 5.36347 5.55173 5.65901 5.73261 5.89223 5.94151 6.02765 6.16571 6.23295 6.32958 6.35389 6.45895 6.50261 6.57033 6.60727 6.65059 6.80228 6.88463 6.97540 7.06293 7.13194 7.44460 7.52975 7.72097 8.16315 8.39892 8.72649 9.11793 9.73245 10.31221 11.13804 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015183 B = 0.006391 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.736389 B = 4379.811270 C = 5402.598250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.139 3.861 3 N -0.582 5.582 4 C -0.264 4.264 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.889 5.889 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.173 3.827 13 H 0.102 0.898 14 C -0.144 4.144 15 C 0.101 3.899 16 N -0.693 5.693 17 C 0.540 3.460 18 O -0.563 6.563 19 C -0.151 4.151 20 C -0.133 4.133 21 C 0.088 3.912 22 O -0.380 6.380 23 C 0.062 3.938 24 C -0.125 4.125 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.033 0.967 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.254 0.746 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.031 0.969 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.412 0.588 37 H 0.133 0.867 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.056 0.944 42 H 0.089 0.911 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.686 1.202 1.567 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.013 3.987 3 N -0.303 5.303 4 C -0.393 4.393 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.217 1.217 12 C 0.066 3.934 13 H 0.120 0.880 14 C -0.203 4.203 15 C -0.025 4.025 16 N -0.342 5.342 17 C 0.327 3.673 18 O -0.445 6.445 19 C -0.154 4.154 20 C -0.153 4.153 21 C 0.012 3.988 22 O -0.298 6.298 23 C -0.015 4.015 24 C -0.162 4.162 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.250 0.750 37 H 0.151 0.849 38 H 0.126 0.874 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.075 0.925 42 H 0.108 0.892 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.633 1.205 2.291 11.917 hybrid contribution 0.319 0.435 -0.995 1.132 sum -11.313 1.640 1.296 11.505 Atomic orbital electron populations 1.22426 1.00087 0.98960 1.01379 1.20773 0.91618 0.87513 0.98790 1.43868 1.75915 1.08254 1.02273 1.19109 1.07772 1.18786 0.93674 0.91849 1.25185 0.94505 1.01366 0.97776 1.70009 1.07280 1.36261 1.39597 0.86372 0.77730 0.81614 0.81936 1.20080 1.21460 1.21651 1.20537 0.89060 0.99491 0.84334 0.88017 1.21994 1.01033 0.98136 0.99132 1.22205 0.89214 0.95670 0.95407 1.45922 1.12084 1.57221 1.19022 1.18399 0.83028 0.79755 0.86132 1.90722 1.82126 1.53143 1.18513 1.21013 0.95241 1.02102 0.97027 1.23584 0.94331 0.96487 1.00874 1.21529 0.93682 0.96242 0.87345 1.88109 1.70423 1.38098 1.33205 1.22666 0.90248 0.95598 0.92991 1.21135 0.99288 1.02976 0.92831 0.93150 0.93515 0.94842 0.94087 0.94431 0.93543 0.90605 0.94688 0.94975 0.92812 0.92994 0.75002 0.84933 0.87372 0.91348 0.88028 0.92537 0.89221 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 9.95 37.16 0.37 -2.65 16 2 C 0.14 2.78 5.75 -4.04 -0.02 2.75 16 3 N -0.58 -12.82 1.88 -165.66 -0.31 -13.13 16 4 C -0.26 -6.38 9.07 -15.06 -0.14 -6.51 16 5 H 0.06 1.54 7.89 -52.48 -0.41 1.13 16 6 C 0.01 0.30 4.87 -17.43 -0.08 0.22 16 7 N -0.89 -23.32 10.90 55.49 0.60 -22.72 16 8 Si 0.89 19.85 29.59 -169.99 -5.03 14.82 16 9 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.17 3.68 1.95 -67.93 -0.13 3.55 16 13 H 0.10 2.47 5.94 -51.93 -0.31 2.16 16 14 C -0.14 -2.90 9.05 37.16 0.34 -2.56 16 15 C 0.10 1.96 4.36 -4.03 -0.02 1.94 16 16 N -0.69 -12.86 4.22 -61.49 -0.26 -13.12 16 17 C 0.54 9.92 7.68 -12.67 -0.10 9.82 16 18 O -0.56 -11.89 16.06 5.26 0.08 -11.80 16 19 C -0.15 -2.29 5.86 -103.09 -0.60 -2.89 16 20 C -0.13 -1.77 9.58 -36.44 -0.35 -2.12 16 21 C 0.09 0.94 7.04 35.80 0.25 1.19 16 22 O -0.38 -4.76 10.83 -35.23 -0.38 -5.14 16 23 C 0.06 0.70 6.88 37.22 0.26 0.96 16 24 C -0.13 -1.68 5.29 -27.96 -0.15 -1.82 16 25 H 0.05 0.94 5.32 -51.93 -0.28 0.66 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 29 H 0.04 0.72 6.29 -51.93 -0.33 0.40 16 30 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 31 H 0.07 1.73 7.69 -51.93 -0.40 1.33 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.03 0.60 6.56 -51.93 -0.34 0.26 16 34 H 0.05 1.07 6.98 -51.93 -0.36 0.71 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.41 7.74 6.04 -40.82 -0.25 7.49 16 37 H 0.13 1.81 7.29 -52.49 -0.38 1.43 16 38 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 42 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 43 H 0.09 1.30 7.31 -51.93 -0.38 0.92 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -27.95 339.05 -7.36 -35.31 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -6.79 Total: 8.80 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -0.38 Total: 1.88 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.03 Total: -48.97 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.30 Total: -16.94 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.95 -7.36 -35.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152912959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.262 kcal (2) G-P(sol) polarization free energy of solvation -27.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds