Wall clock time and date at job start Tue Mar 31 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47047 * 2 1 4 4 C 1.36937 * 120.00549 * 275.90569 * 3 2 1 5 5 H 1.08004 * 120.00098 * 34.12131 * 4 3 2 6 6 C 1.38807 * 120.00412 * 214.13088 * 4 3 2 7 7 N 1.31624 * 120.00189 * 16.94044 * 6 4 3 8 8 Si 1.86799 * 120.00160 * 196.94743 * 6 4 3 9 9 H 1.48502 * 109.47133 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47527 * 119.99745 * 8 6 4 11 11 H 1.48504 * 109.47112 * 239.99681 * 8 6 4 12 12 C 1.46501 * 120.00112 * 95.90928 * 3 2 1 13 13 H 1.09000 * 109.47576 * 177.15108 * 12 3 2 14 14 C 1.52995 * 109.47388 * 57.14198 * 12 3 2 15 15 C 1.53012 * 109.46589 * 297.14933 * 12 3 2 16 16 N 1.46504 * 109.46917 * 304.99714 * 15 12 3 17 17 C 1.34769 * 119.99776 * 180.02562 * 16 15 12 18 18 O 1.21615 * 120.00323 * 359.97438 * 17 16 15 19 19 C 1.47105 * 120.00038 * 180.02562 * 17 16 15 20 20 C 1.32089 * 118.87493 * 179.73391 * 19 17 16 21 21 C 1.50271 * 122.57617 * 180.10411 * 20 19 17 22 22 O 1.42890 * 110.14754 * 344.83414 * 21 20 19 23 23 C 1.43270 * 113.10286 * 50.31452 * 22 21 20 24 24 C 1.50412 * 118.87633 * 359.97438 * 19 17 16 25 25 H 1.09005 * 109.46606 * 299.99777 * 1 2 3 26 26 H 1.09002 * 109.47581 * 59.99388 * 1 2 3 27 27 H 1.08998 * 109.47231 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46949 * 240.00575 * 2 1 3 29 29 H 1.08996 * 109.47205 * 120.00387 * 2 1 3 30 30 H 0.97001 * 120.00294 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.46596 * 60.00456 * 14 12 3 32 32 H 1.09000 * 109.47606 * 180.02562 * 14 12 3 33 33 H 1.09000 * 109.47505 * 300.00953 * 14 12 3 34 34 H 1.08998 * 109.47120 * 64.99802 * 15 12 3 35 35 H 1.08995 * 109.46540 * 184.99924 * 15 12 3 36 36 H 0.97003 * 119.99901 * 0.02562 * 16 15 12 37 37 H 1.07991 * 118.71288 * 0.36375 * 20 19 17 38 38 H 1.09000 * 109.50813 * 224.51793 * 21 20 19 39 39 H 1.09002 * 109.06545 * 104.86635 * 21 20 19 40 40 H 1.08999 * 109.64302 * 171.47527 * 23 22 21 41 41 H 1.09001 * 109.64022 * 50.85752 * 23 22 21 42 42 H 1.09010 * 109.45639 * 283.38005 * 24 19 17 43 43 H 1.08999 * 109.45534 * 43.31093 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1315 2.0675 -1.1795 5 1 1.4231 1.8932 -1.9759 6 6 3.1569 2.9871 -1.3519 7 7 4.1991 2.9691 -0.5482 8 14 3.0577 4.2504 -2.7244 9 1 1.7945 4.0604 -3.4817 10 1 3.0860 5.6165 -2.1428 11 1 4.2140 4.0782 -3.6401 12 6 2.3856 2.0283 1.2620 13 1 2.7711 3.0275 1.0593 14 6 3.4619 1.1995 1.9658 15 6 1.1515 2.1304 2.1608 16 7 0.0788 2.8210 1.4407 17 6 -1.1108 3.0272 2.0397 18 8 -1.2939 2.6395 3.1778 19 6 -2.1882 3.7201 1.3165 20 6 -3.3469 3.9056 1.9230 21 6 -4.5039 4.6003 1.2621 22 8 -4.0579 5.3025 0.1003 23 6 -3.2685 4.4915 -0.7782 24 6 -1.9345 4.1884 -0.0902 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 4.9155 3.6119 -0.6684 31 1 4.3410 1.1267 1.3255 32 1 3.7349 1.6806 2.9050 33 1 3.0764 0.2002 2.1685 34 1 0.8187 1.1296 2.4360 35 1 1.4035 2.6900 3.0615 36 1 0.2247 3.1299 0.5328 37 1 -3.4660 3.5476 2.9348 38 1 -4.9521 5.3063 1.9613 39 1 -5.2469 3.8574 0.9724 40 1 -3.0867 5.0291 -1.7088 41 1 -3.7935 3.5593 -0.9868 42 1 -1.3239 5.0912 -0.0678 43 1 -1.4097 3.4093 -0.6431 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152912959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:29 Heat of formation + Delta-G solvation = -68.956377 kcal Electronic energy + Delta-G solvation = -23757.215247 eV Core-core repulsion = 20416.557864 eV Total energy + Delta-G solvation = -3340.657383 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.22703 -39.76086 -38.56855 -35.34532 -34.72227 -33.72794 -32.70056 -31.94377 -29.95642 -27.94422 -26.29342 -25.78231 -24.62355 -23.34700 -22.12905 -21.03376 -19.45909 -18.76722 -18.42185 -17.46624 -16.87943 -16.68142 -16.49036 -16.07948 -15.99370 -15.59008 -15.24814 -14.64044 -14.55029 -14.31707 -14.04189 -13.85969 -13.66903 -13.50300 -13.36629 -13.17523 -12.82988 -12.72778 -12.56364 -12.50730 -12.39770 -12.00956 -11.86360 -11.79908 -11.38103 -11.17878 -11.17070 -10.55538 -10.44386 -10.20699 -9.85760 -8.52086 -7.81798 -5.33545 0.32005 1.48718 1.54634 1.61236 2.24239 2.34995 2.54764 2.95280 3.32714 3.62042 3.68476 3.74337 3.88159 4.21726 4.26708 4.33593 4.44920 4.46926 4.53657 4.56210 4.65719 4.72861 4.78490 4.81191 4.87450 4.90857 4.95317 4.96740 5.05076 5.21179 5.26067 5.31671 5.47002 5.51684 5.59158 5.70056 5.76387 5.83709 6.10762 6.50653 6.69044 7.22752 7.27435 7.92196 8.45640 9.21940 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015183 B = 0.006391 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.736389 B = 4379.811270 C = 5402.598250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.137 3.863 3 N -0.590 5.590 4 C -0.259 4.259 5 H 0.064 0.936 6 C -0.032 4.032 7 N -0.916 5.916 8 Si 0.949 3.051 9 H -0.262 1.262 10 H -0.294 1.294 11 H -0.301 1.301 12 C 0.179 3.821 13 H 0.072 0.928 14 C -0.134 4.134 15 C 0.113 3.887 16 N -0.692 5.692 17 C 0.538 3.462 18 O -0.596 6.596 19 C -0.180 4.180 20 C -0.108 4.108 21 C 0.086 3.914 22 O -0.393 6.393 23 C 0.064 3.936 24 C -0.120 4.120 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.033 0.967 29 H 0.044 0.956 30 H 0.248 0.752 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.411 0.589 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.986 1.284 1.121 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.012 3.988 3 N -0.312 5.312 4 C -0.389 4.389 5 H 0.081 0.919 6 C -0.230 4.230 7 N -0.560 5.560 8 Si 0.778 3.222 9 H -0.186 1.186 10 H -0.221 1.221 11 H -0.229 1.229 12 C 0.072 3.928 13 H 0.090 0.910 14 C -0.194 4.194 15 C -0.013 4.013 16 N -0.342 5.342 17 C 0.327 3.673 18 O -0.481 6.481 19 C -0.183 4.183 20 C -0.128 4.128 21 C 0.011 3.989 22 O -0.312 6.312 23 C -0.013 4.013 24 C -0.157 4.157 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.249 0.751 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.113 0.887 40 H 0.135 0.865 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.959 1.276 1.831 14.136 hybrid contribution 0.977 0.358 -0.791 1.307 sum -12.982 1.634 1.041 13.126 Atomic orbital electron populations 1.22232 0.98144 1.00240 1.00687 1.20857 0.92974 0.86280 0.98702 1.43982 1.76043 1.09139 1.01988 1.19281 1.07055 1.18419 0.94135 0.91868 1.25746 0.94477 1.03057 0.99693 1.70140 1.07855 1.36832 1.41179 0.85503 0.77623 0.79381 0.79701 1.18575 1.22065 1.22864 1.20377 0.89899 0.98034 0.84513 0.91032 1.21860 0.99518 0.98922 0.99067 1.21944 0.88764 0.95671 0.94882 1.45886 1.12178 1.57225 1.18861 1.18917 0.83344 0.79165 0.85827 1.90694 1.82698 1.54722 1.19943 1.20936 0.94992 1.04261 0.98106 1.23905 0.94394 0.94117 1.00379 1.21813 0.92699 0.97246 0.87187 1.88103 1.70442 1.38893 1.33716 1.22747 0.89011 0.96418 0.93084 1.21093 1.00512 1.02204 0.91926 0.94033 0.93895 0.92552 0.94885 0.93778 0.94279 0.93468 0.93120 0.93633 0.92987 0.93156 0.75112 0.85423 0.84878 0.88678 0.86476 0.91214 0.90062 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 9.95 71.98 0.72 -4.53 16 2 C 0.14 5.35 5.75 86.38 0.50 5.85 16 3 N -0.59 -25.95 1.88 -678.02 -1.28 -27.23 16 4 C -0.26 -12.48 9.07 84.03 0.76 -11.72 16 5 H 0.06 3.02 7.89 -2.91 -0.02 3.00 16 6 C -0.03 -1.62 4.87 84.86 0.41 -1.21 16 7 N -0.92 -49.05 10.90 21.65 0.24 -48.82 16 8 Si 0.95 41.04 29.59 68.60 2.03 43.07 16 9 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 10 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 12 C 0.18 7.68 1.95 44.99 0.09 7.77 16 13 H 0.07 3.56 5.94 -2.39 -0.01 3.54 16 14 C -0.13 -5.44 9.05 71.98 0.65 -4.79 16 15 C 0.11 4.42 4.36 86.38 0.38 4.80 16 16 N -0.69 -25.73 4.22 -466.70 -1.97 -27.70 16 17 C 0.54 19.63 7.68 86.57 0.67 20.30 16 18 O -0.60 -25.08 16.06 -4.08 -0.07 -25.14 16 19 C -0.18 -5.26 5.86 -18.59 -0.11 -5.37 16 20 C -0.11 -2.64 9.58 24.59 0.24 -2.41 16 21 C 0.09 1.52 7.04 71.10 0.50 2.02 16 22 O -0.39 -8.63 10.83 -148.98 -1.61 -10.24 16 23 C 0.06 1.29 6.88 72.02 0.50 1.79 16 24 C -0.12 -3.07 5.29 29.80 0.16 -2.91 16 25 H 0.04 1.49 5.32 -2.38 -0.01 1.48 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.03 1.33 8.09 -2.39 -0.02 1.31 16 29 H 0.04 1.65 6.29 -2.39 -0.02 1.63 16 30 H 0.25 13.13 8.31 -92.71 -0.77 12.36 16 31 H 0.05 2.17 7.69 -2.39 -0.02 2.16 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.04 1.68 6.56 -2.39 -0.02 1.66 16 34 H 0.05 2.05 6.98 -2.39 -0.02 2.03 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.41 15.51 6.04 -92.71 -0.56 14.95 16 37 H 0.13 3.27 7.29 -2.92 -0.02 3.25 16 38 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.10 1.27 8.14 -2.39 -0.02 1.26 16 40 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 1.23 8.09 -2.39 -0.02 1.21 16 42 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.09 2.31 7.31 -2.39 -0.02 2.29 16 Total: -1.00 -59.72 339.05 3.23 -56.49 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.44 Total: 29.97 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 5.45 Total: 9.60 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -3.01 Total: -103.74 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -1.68 Total: -35.38 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -59.72 3.23 -56.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152912959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.469 kcal (2) G-P(sol) polarization free energy of solvation -59.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds