Wall clock time and date at job start Tue Mar 31 2020 06:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47047 * 2 1 4 4 C 1.36940 * 119.99876 * 84.26973 * 3 2 1 5 5 H 1.07994 * 119.99761 * 29.88277 * 4 3 2 6 6 C 1.38812 * 119.99723 * 209.88476 * 4 3 2 7 7 N 1.31620 * 120.00595 * 18.93058 * 6 4 3 8 8 Si 1.86803 * 119.99495 * 198.93273 * 6 4 3 9 9 H 1.48497 * 109.47122 * 265.28423 * 8 6 4 10 10 H 1.48497 * 109.47207 * 25.28505 * 8 6 4 11 11 H 1.48502 * 109.47282 * 145.28314 * 8 6 4 12 12 C 1.46501 * 120.00259 * 264.27185 * 3 2 1 13 13 H 1.08998 * 109.47297 * 179.97438 * 12 3 2 14 14 C 1.52997 * 109.47156 * 59.99735 * 12 3 2 15 15 C 1.53004 * 109.46895 * 299.99736 * 12 3 2 16 16 N 1.46504 * 109.47021 * 305.00099 * 15 12 3 17 17 C 1.34776 * 119.99761 * 180.02562 * 16 15 12 18 18 O 1.21281 * 119.99952 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99936 * 180.02562 * 17 16 15 20 20 C 1.53004 * 119.80650 * 250.97883 * 19 17 16 21 21 C 1.53003 * 60.65241 * 247.69089 * 20 19 17 22 22 H 1.08997 * 120.25338 * 112.13952 * 21 20 19 23 23 C 1.54478 * 118.06274 * 269.59437 * 21 20 19 24 24 O 1.44424 * 104.80427 * 86.82957 * 23 21 20 25 25 C 1.43865 * 105.56700 * 319.94055 * 24 23 21 26 26 H 1.09000 * 109.46937 * 299.99297 * 1 2 3 27 27 H 1.08996 * 109.47464 * 59.99730 * 1 2 3 28 28 H 1.09003 * 109.47198 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46937 * 240.00703 * 2 1 3 30 30 H 1.09001 * 109.47902 * 120.00420 * 2 1 3 31 31 H 0.96993 * 120.00270 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46981 * 60.00212 * 14 12 3 33 33 H 1.09000 * 109.46981 * 180.02562 * 14 12 3 34 34 H 1.09000 * 109.47491 * 299.99839 * 14 12 3 35 35 H 1.08993 * 109.47038 * 65.00046 * 15 12 3 36 36 H 1.08996 * 109.46801 * 185.00205 * 15 12 3 37 37 H 0.96996 * 120.00229 * 359.97438 * 16 15 12 38 38 H 1.09000 * 117.42835 * 355.36476 * 20 19 17 39 39 H 1.08997 * 117.42699 * 140.01165 * 20 19 17 40 40 H 1.09008 * 110.37028 * 205.65797 * 23 21 20 41 41 H 1.09001 * 110.37319 * 327.99237 * 23 21 20 42 42 H 1.09000 * 109.55819 * 281.17328 * 25 24 23 43 43 H 1.09006 * 110.92295 * 159.01925 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1348 2.0662 1.1800 5 1 2.3457 1.5331 2.0952 6 6 1.9819 3.4457 1.1997 7 7 1.3723 4.0547 0.2048 8 14 2.6416 4.4380 2.6384 9 1 1.5573 4.6530 3.6300 10 1 3.7587 3.6985 3.2790 11 1 3.1332 5.7514 2.1499 12 6 2.3818 2.0297 -1.2624 13 1 2.7198 3.0468 -1.0642 14 6 1.1622 2.0688 -2.1854 15 6 3.5061 1.2402 -1.9359 16 7 4.6296 1.1005 -1.0061 17 6 5.7398 0.4372 -1.3855 18 8 5.8086 -0.0443 -2.4965 19 6 6.8953 0.2930 -0.4289 20 6 8.1903 1.0690 -0.6780 21 6 8.1931 -0.4557 -0.8064 22 1 8.3341 -0.9245 -1.7802 23 6 8.5241 -1.2902 0.4507 24 8 7.2590 -1.4554 1.1276 25 6 6.5879 -0.1887 1.0063 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.2658 5.0187 0.2184 32 1 0.3613 2.6312 -1.7055 33 1 1.4329 2.5509 -3.1248 34 1 0.8238 1.0518 -2.3837 35 1 3.1399 0.2521 -2.2143 36 1 3.8373 1.7699 -2.8291 37 1 4.5748 1.4860 -0.1177 38 1 8.2583 1.6504 -1.5974 39 1 8.6913 1.5009 0.1883 40 1 8.9315 -2.2603 0.1657 41 1 9.2281 -0.7544 1.0874 42 1 6.9944 0.5110 1.7366 43 1 5.5129 -0.3027 1.1462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153459157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:27 Heat of formation + Delta-G solvation = -29.974275 kcal Electronic energy + Delta-G solvation = -23667.477301 eV Core-core repulsion = 20328.510309 eV Total energy + Delta-G solvation = -3338.966992 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.74173 -38.55487 -36.88586 -34.63587 -33.75838 -31.90926 -30.90742 -28.91994 -28.34404 -25.87901 -25.31165 -24.00581 -22.53479 -21.62259 -21.10935 -19.49780 -19.01151 -17.45545 -16.80869 -15.96932 -15.48415 -15.32012 -14.93250 -14.71650 -14.50071 -14.06207 -13.88916 -13.49927 -13.15831 -12.83574 -12.60595 -12.39007 -11.92086 -11.88915 -11.59567 -11.44479 -11.37436 -11.29080 -11.08005 -10.84270 -10.73629 -10.52718 -10.33147 -10.28007 -9.93771 -9.74053 -9.62390 -9.54000 -9.32134 -8.56479 -8.42848 -6.75406 -5.90520 -3.34622 2.78045 3.29009 3.38127 3.38592 3.40227 3.62162 3.98644 4.33280 4.40162 4.45067 4.87103 4.95435 5.02302 5.25291 5.26054 5.36231 5.49907 5.53877 5.65704 5.75235 5.80773 5.91128 6.00101 6.10167 6.14513 6.31803 6.43859 6.49303 6.53773 6.65004 6.66772 6.70564 6.75830 6.97013 7.04427 7.26538 7.47763 7.56451 7.73612 8.12379 8.38413 8.69342 9.12640 9.75517 10.30811 11.16350 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015595 B = 0.005964 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.007458 B = 4694.078896 C = 5355.122847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 N -0.582 5.582 4 C -0.259 4.259 5 H 0.066 0.934 6 C 0.008 3.992 7 N -0.891 5.891 8 Si 0.894 3.106 9 H -0.288 1.288 10 H -0.278 1.278 11 H -0.290 1.290 12 C 0.174 3.826 13 H 0.106 0.894 14 C -0.142 4.142 15 C 0.101 3.899 16 N -0.695 5.695 17 C 0.552 3.448 18 O -0.557 6.557 19 C -0.202 4.202 20 C -0.109 4.109 21 C -0.163 4.163 22 H 0.129 0.871 23 C 0.073 3.927 24 O -0.369 6.369 25 C 0.086 3.914 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.027 0.973 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.254 0.746 32 H 0.076 0.924 33 H 0.031 0.969 34 H 0.031 0.969 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.412 0.588 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.551 -5.133 -0.663 11.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 N -0.304 5.304 4 C -0.389 4.389 5 H 0.084 0.916 6 C -0.192 4.192 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.215 1.215 10 H -0.203 1.203 11 H -0.216 1.216 12 C 0.066 3.934 13 H 0.124 0.876 14 C -0.202 4.202 15 C -0.024 4.024 16 N -0.344 5.344 17 C 0.337 3.663 18 O -0.437 6.437 19 C -0.206 4.206 20 C -0.146 4.146 21 C -0.182 4.182 22 H 0.147 0.853 23 C -0.004 4.004 24 O -0.287 6.287 25 C 0.009 3.991 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.249 0.751 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.435 -5.496 -1.341 11.870 hybrid contribution 0.037 1.037 0.927 1.392 sum 10.472 -4.459 -0.413 11.390 Atomic orbital electron populations 1.22384 0.99742 0.98360 1.02088 1.20794 0.91950 0.87593 0.98109 1.43999 1.73750 1.09708 1.02914 1.19148 1.42840 0.89396 0.87502 0.91608 1.25052 0.98772 0.97981 0.97360 1.70011 1.42005 1.08853 1.32562 0.86418 0.79008 0.79800 0.82365 1.21518 1.20330 1.21641 1.20564 0.90167 0.97579 0.85078 0.87622 1.22085 1.00724 0.99450 0.97914 1.22160 0.87540 1.00749 0.91944 1.45862 1.14927 1.54450 1.19193 1.18989 0.82586 0.78285 0.86458 1.90649 1.81822 1.49484 1.21725 1.23344 0.90032 1.09518 0.97696 1.23118 0.94661 0.92909 1.03930 1.24299 0.98826 0.93782 1.01314 0.85263 1.22958 0.86842 1.00147 0.90409 1.89078 1.30314 1.32919 1.76437 1.22776 0.99644 0.85251 0.91442 0.92902 0.93167 0.95361 0.94524 0.94522 0.93593 0.90486 0.95013 0.95006 0.92906 0.92831 0.75105 0.87352 0.87774 0.88413 0.91749 0.91292 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.21 10.01 37.15 0.37 -2.84 16 2 C 0.14 2.84 5.62 -4.05 -0.02 2.82 16 3 N -0.58 -12.79 1.87 -165.67 -0.31 -13.10 16 4 C -0.26 -6.28 9.29 -15.06 -0.14 -6.42 16 5 H 0.07 1.60 7.90 -52.49 -0.41 1.19 16 6 C 0.01 0.20 4.84 -17.43 -0.08 0.11 16 7 N -0.89 -23.24 10.61 55.49 0.59 -22.65 16 8 Si 0.89 19.91 29.59 -169.99 -5.03 14.88 16 9 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 12 C 0.17 3.67 1.94 -67.93 -0.13 3.54 16 13 H 0.11 2.54 5.81 -51.93 -0.30 2.24 16 14 C -0.14 -2.89 8.12 37.16 0.30 -2.59 16 15 C 0.10 1.96 4.94 -4.04 -0.02 1.94 16 16 N -0.69 -12.71 5.28 -60.29 -0.32 -13.02 16 17 C 0.55 9.94 7.42 -10.98 -0.08 9.86 16 18 O -0.56 -11.71 16.85 5.56 0.09 -11.61 16 19 C -0.20 -2.91 2.84 -154.09 -0.44 -3.35 16 20 C -0.11 -1.23 9.89 -26.73 -0.26 -1.50 16 21 C -0.16 -1.99 6.90 -89.05 -0.61 -2.61 16 22 H 0.13 1.63 8.14 -51.93 -0.42 1.21 16 23 C 0.07 0.80 7.45 37.93 0.28 1.08 16 24 O -0.37 -5.31 11.62 -35.23 -0.41 -5.72 16 25 C 0.09 1.19 7.09 37.93 0.27 1.45 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.05 0.99 6.08 -51.93 -0.32 0.68 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.71 6.54 -51.93 -0.34 0.37 16 30 H 0.04 0.73 8.09 -51.93 -0.42 0.31 16 31 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 32 H 0.08 1.77 7.56 -51.93 -0.39 1.38 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.03 0.60 6.61 -51.93 -0.34 0.26 16 35 H 0.05 1.05 6.86 -51.93 -0.36 0.69 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.41 7.61 7.70 -40.82 -0.31 7.29 16 38 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.11 1.59 7.88 -51.93 -0.41 1.18 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -27.97 344.22 -7.74 -35.71 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -6.97 Total: 8.82 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -0.57 Total: 1.51 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.04 Total: -48.77 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.32 Total: -17.33 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.97 -7.74 -35.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153459157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.733 kcal (2) G-P(sol) polarization free energy of solvation -27.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds