Wall clock time and date at job start Tue Mar 31 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47004 * 2 1 4 4 C 1.36943 * 119.99920 * 274.03976 * 3 2 1 5 5 H 1.07992 * 119.99744 * 174.71448 * 4 3 2 6 6 C 1.38813 * 119.99905 * 354.70761 * 4 3 2 7 7 N 1.31616 * 119.99848 * 31.38612 * 6 4 3 8 8 Si 1.86797 * 120.00084 * 211.38482 * 6 4 3 9 9 H 1.48506 * 109.46986 * 84.99571 * 8 6 4 10 10 H 1.48499 * 109.47605 * 204.99741 * 8 6 4 11 11 H 1.48501 * 109.46939 * 325.00107 * 8 6 4 12 12 C 1.46494 * 120.00163 * 94.04029 * 3 2 1 13 13 H 1.08995 * 109.47278 * 179.97438 * 12 3 2 14 14 C 1.53002 * 109.47349 * 59.99777 * 12 3 2 15 15 C 1.53001 * 109.46851 * 300.00202 * 12 3 2 16 16 N 1.46507 * 109.46920 * 304.99684 * 15 12 3 17 17 C 1.34773 * 119.99779 * 180.02562 * 16 15 12 18 18 O 1.21279 * 120.00319 * 359.72255 * 17 16 15 19 19 C 1.50708 * 119.99940 * 179.72472 * 17 16 15 20 20 H 1.08999 * 115.50902 * 325.36979 * 19 17 16 21 21 C 1.53000 * 117.42949 * 110.65137 * 19 17 16 22 22 H 1.09001 * 119.81289 * 355.36460 * 21 19 17 23 23 C 1.54478 * 118.06351 * 198.08971 * 21 19 17 24 24 O 1.44427 * 104.80211 * 321.12503 * 23 21 19 25 25 C 1.45915 * 105.86801 * 319.97817 * 24 23 21 26 26 C 1.53000 * 117.43375 * 179.97438 * 19 17 16 27 27 H 1.09003 * 119.80547 * 4.63855 * 26 19 17 28 28 H 1.09002 * 109.46964 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47375 * 299.99790 * 1 2 3 30 30 H 1.09002 * 109.47298 * 60.00489 * 1 2 3 31 31 H 1.09007 * 109.47200 * 240.00452 * 2 1 3 32 32 H 1.08993 * 109.47119 * 120.00048 * 2 1 3 33 33 H 0.97003 * 119.99909 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.46832 * 60.00119 * 14 12 3 35 35 H 1.08993 * 109.47231 * 180.02562 * 14 12 3 36 36 H 1.09003 * 109.46995 * 300.00605 * 14 12 3 37 37 H 1.09004 * 109.47194 * 185.00065 * 15 12 3 38 38 H 1.08991 * 109.47516 * 64.99570 * 15 12 3 39 39 H 0.96992 * 120.00017 * 359.72781 * 16 15 12 40 40 H 1.08993 * 110.37739 * 79.95510 * 23 21 19 41 41 H 1.08997 * 110.37614 * 202.29907 * 23 21 19 42 42 H 1.09004 * 109.50697 * 281.46643 * 25 24 23 43 43 H 1.08993 * 111.92868 * 158.67048 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1677 2.0546 -1.1830 5 1 2.4454 3.0982 -1.1789 6 6 1.9625 1.3957 -2.3874 7 7 1.0859 0.4166 -2.4608 8 14 2.9302 1.8986 -3.9040 9 1 4.2409 1.2004 -3.9087 10 1 2.1677 1.5282 -5.1232 11 1 3.1516 3.3669 -3.8855 12 6 2.3467 2.0421 1.2655 13 1 2.6911 3.0569 1.0668 14 6 3.4517 1.2594 1.9779 15 6 1.1019 2.0900 2.1538 16 7 0.0066 2.7348 1.4251 17 6 -1.1958 2.8890 2.0142 18 8 -1.3725 2.4896 3.1456 19 6 -2.3207 3.5579 1.2669 20 1 -2.0243 4.3628 0.5943 21 6 -3.5016 2.6835 0.8406 22 1 -3.4697 1.6078 1.0137 23 6 -4.4391 3.2170 -0.2652 24 8 -4.5658 4.6295 0.0083 25 6 -4.6656 4.7476 1.4592 26 6 -3.6607 3.7017 1.9912 27 1 -3.7489 3.3951 3.0335 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 0.9427 -0.0441 -3.3024 34 1 4.3384 1.2252 1.3450 35 1 3.6957 1.7508 2.9196 36 1 3.1077 0.2443 2.1765 37 1 1.3219 2.6591 3.0571 38 1 0.8100 1.0757 2.4254 39 1 0.1480 3.0545 0.5204 40 1 -3.9951 3.0592 -1.2480 41 1 -5.4125 2.7302 -0.2050 42 1 -5.6779 4.4964 1.7761 43 1 -4.3951 5.7448 1.8060 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154751017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:35 Heat of formation + Delta-G solvation = -16.562551 kcal Electronic energy + Delta-G solvation = -23568.467850 eV Core-core repulsion = 20230.082434 eV Total energy + Delta-G solvation = -3338.385416 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.55375 -38.77203 -36.98546 -34.22910 -33.83584 -32.12303 -30.19148 -28.76120 -28.47736 -27.05325 -25.14072 -23.76041 -21.97626 -21.50321 -20.62022 -19.56118 -18.96973 -17.40933 -16.96213 -15.94660 -15.64099 -15.44831 -15.18721 -15.11863 -14.48067 -13.91609 -13.64758 -13.20840 -12.87932 -12.67647 -12.62968 -12.43546 -12.13924 -11.91652 -11.68600 -11.60129 -11.47608 -11.13238 -10.79791 -10.73294 -10.62203 -10.32014 -10.25748 -10.21497 -9.84531 -9.74042 -9.64699 -9.40207 -9.29946 -8.45806 -8.24675 -7.03727 -5.87501 -3.07740 2.76266 3.37237 3.39488 3.46196 3.48480 3.74786 3.96146 4.45024 4.67353 4.69216 4.84136 4.87400 5.18955 5.31444 5.37122 5.37697 5.42771 5.54175 5.56489 5.62349 5.74571 5.89941 5.91960 6.05582 6.09778 6.11745 6.29547 6.31807 6.61796 6.62452 6.70302 6.84273 6.97899 7.02327 7.12287 7.21121 7.65428 7.80011 8.09923 8.12042 8.27942 8.70673 9.18421 9.82346 10.27697 11.16001 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015706 B = 0.005690 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.333172 B = 4920.149355 C = 5991.573218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.165 3.835 3 N -0.593 5.593 4 C -0.263 4.263 5 H 0.076 0.924 6 C 0.011 3.989 7 N -0.880 5.880 8 Si 0.880 3.120 9 H -0.290 1.290 10 H -0.295 1.295 11 H -0.283 1.283 12 C 0.161 3.839 13 H 0.068 0.932 14 C -0.158 4.158 15 C 0.105 3.895 16 N -0.693 5.693 17 C 0.541 3.459 18 O -0.561 6.561 19 C -0.138 4.138 20 H 0.124 0.876 21 C -0.166 4.166 22 H 0.128 0.872 23 C 0.074 3.926 24 O -0.380 6.380 25 C 0.073 3.927 26 C -0.173 4.173 27 H 0.132 0.868 28 H 0.012 0.988 29 H 0.020 0.980 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.006 0.994 33 H 0.252 0.748 34 H 0.058 0.942 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.413 0.587 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.110 4.632 6.782 10.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.040 3.960 3 N -0.315 5.315 4 C -0.391 4.391 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.524 5.524 8 Si 0.709 3.291 9 H -0.217 1.217 10 H -0.222 1.222 11 H -0.208 1.208 12 C 0.052 3.948 13 H 0.086 0.914 14 C -0.217 4.217 15 C -0.021 4.021 16 N -0.343 5.343 17 C 0.327 3.673 18 O -0.441 6.441 19 C -0.159 4.159 20 H 0.142 0.858 21 C -0.185 4.185 22 H 0.146 0.854 23 C -0.003 4.003 24 O -0.298 6.298 25 C -0.003 4.003 26 C -0.192 4.192 27 H 0.150 0.850 28 H 0.031 0.969 29 H 0.039 0.961 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.024 0.976 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.250 0.750 40 H 0.119 0.881 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.271 4.417 7.250 11.178 hybrid contribution 0.604 0.018 -1.132 1.284 sum -6.666 4.435 6.118 10.077 Atomic orbital electron populations 1.22412 0.99174 0.97912 1.01373 1.20889 0.92521 0.84531 0.98013 1.44232 1.75664 1.11203 1.00447 1.19194 1.41776 0.94820 0.83289 0.90659 1.24682 0.98676 0.98248 0.97169 1.70279 1.30335 1.26623 1.25157 0.86636 0.81276 0.77978 0.83171 1.21727 1.22192 1.20829 1.20549 0.91162 0.96455 0.86622 0.91378 1.22183 0.99706 1.00604 0.99251 1.22027 0.88204 0.97223 0.94614 1.45792 1.10351 1.58976 1.19136 1.19351 0.83074 0.78965 0.85952 1.90636 1.82950 1.51460 1.19043 1.22060 0.88920 1.02459 1.02488 0.85845 1.23940 0.98841 0.98335 0.97382 0.85387 1.22955 0.97336 0.81242 0.98727 1.89333 1.94765 1.23879 1.21868 1.23205 0.97154 0.99384 0.80590 1.23959 0.96321 1.00008 0.98930 0.84971 0.96871 0.96148 0.89336 0.89836 0.97615 0.93756 0.92246 0.93658 0.92994 0.92888 0.92062 0.74973 0.88059 0.91063 0.91099 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.27 37.16 0.34 -2.99 16 2 C 0.17 3.75 5.01 -4.04 -0.02 3.73 16 3 N -0.59 -13.05 1.92 -165.67 -0.32 -13.37 16 4 C -0.26 -6.41 9.39 -15.06 -0.14 -6.56 16 5 H 0.08 1.81 7.83 -52.49 -0.41 1.40 16 6 C 0.01 0.27 4.97 -17.43 -0.09 0.18 16 7 N -0.88 -22.98 8.40 55.49 0.47 -22.52 16 8 Si 0.88 20.42 29.65 -169.99 -5.04 15.38 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.30 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.16 2.97 2.87 -67.93 -0.19 2.77 16 13 H 0.07 1.24 7.78 -51.93 -0.40 0.84 16 14 C -0.16 -2.58 9.18 37.16 0.34 -2.24 16 15 C 0.11 1.88 4.32 -4.04 -0.02 1.87 16 16 N -0.69 -12.44 3.99 -60.29 -0.24 -12.68 16 17 C 0.54 9.65 7.36 -10.98 -0.08 9.57 16 18 O -0.56 -11.46 16.34 5.56 0.09 -11.37 16 19 C -0.14 -2.08 5.55 -91.77 -0.51 -2.58 16 20 H 0.12 1.80 8.06 -51.93 -0.42 1.38 16 21 C -0.17 -2.27 6.95 -89.08 -0.62 -2.89 16 22 H 0.13 1.81 8.14 -51.93 -0.42 1.39 16 23 C 0.07 0.89 7.57 37.93 0.29 1.18 16 24 O -0.38 -5.04 11.33 -35.23 -0.40 -5.44 16 25 C 0.07 0.79 7.67 37.94 0.29 1.09 16 26 C -0.17 -2.24 6.64 -89.07 -0.59 -2.83 16 27 H 0.13 1.75 7.81 -51.93 -0.41 1.35 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.02 0.43 4.84 -51.93 -0.25 0.18 16 30 H 0.09 2.20 6.30 -51.93 -0.33 1.88 16 31 H 0.08 2.15 5.84 -51.92 -0.30 1.85 16 32 H 0.01 0.12 6.43 -51.93 -0.33 -0.21 16 33 H 0.25 6.55 8.31 -40.82 -0.34 6.21 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.87 6.66 -51.93 -0.35 0.52 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.06 1.20 6.92 -51.93 -0.36 0.84 16 39 H 0.41 7.74 7.90 -40.82 -0.32 7.41 16 40 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -27.70 337.64 -8.17 -35.87 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.82 Total: 8.72 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -1.00 Total: 0.31 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.09 Total: -48.57 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.31 Total: -16.81 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.04 Total: 15.38 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.70 -8.17 -35.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154751017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.310 kcal (2) G-P(sol) polarization free energy of solvation -27.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds