Wall clock time and date at job start Tue Mar 31 2020 06:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47182 * 2 1 4 4 C 1.42905 * 114.00246 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.46971 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00516 * 359.97438 * 5 4 3 7 7 N 1.34785 * 119.99636 * 180.02562 * 5 4 3 8 8 C 1.46497 * 119.99585 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.46756 * 179.97438 * 8 7 5 10 10 C 1.50698 * 109.47173 * 180.02562 * 9 8 7 11 11 C 1.29460 * 117.69667 * 94.99794 * 10 9 8 12 12 C 1.50324 * 123.65257 * 181.14156 * 11 10 9 13 13 N 1.47122 * 109.10054 * 348.53834 * 12 11 10 14 14 C 1.36943 * 121.53573 * 223.15756 * 13 12 11 15 15 H 1.07994 * 120.00029 * 156.23909 * 14 13 12 16 16 C 1.38816 * 119.99651 * 336.23681 * 14 13 12 17 17 N 1.31620 * 119.99998 * 344.48177 * 16 14 13 18 18 Si 1.86801 * 119.99831 * 164.48178 * 16 14 13 19 19 H 1.48492 * 109.47157 * 60.00093 * 18 16 14 20 20 H 1.48503 * 109.46921 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46909 * 299.99543 * 18 16 14 22 22 C 1.47335 * 117.09210 * 43.38437 * 13 12 11 23 23 C 1.49964 * 117.69405 * 275.02133 * 10 9 8 24 24 H 1.09002 * 109.46830 * 299.99688 * 1 2 3 25 25 H 1.09005 * 109.47221 * 59.99756 * 1 2 3 26 26 H 1.08997 * 109.47138 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47186 * 240.00475 * 2 1 3 28 28 H 1.08997 * 109.47531 * 120.00213 * 2 1 3 29 29 H 1.08996 * 109.46915 * 60.00134 * 4 3 2 30 30 H 1.08996 * 109.46944 * 300.00310 * 4 3 2 31 31 H 0.96993 * 119.99535 * 359.97438 * 7 5 4 32 32 H 1.08996 * 109.47314 * 59.99927 * 8 7 5 33 33 H 1.08996 * 109.47468 * 299.99537 * 8 7 5 34 34 H 1.08996 * 109.47204 * 59.99939 * 9 8 7 35 35 H 1.09004 * 109.47376 * 299.99814 * 9 8 7 36 36 H 1.08001 * 118.17174 * 0.86235 * 11 10 9 37 37 H 1.08996 * 109.52061 * 108.64573 * 12 11 10 38 38 H 1.09003 * 109.51767 * 228.83796 * 12 11 10 39 39 H 0.97003 * 119.99843 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.78168 * 178.39332 * 22 13 12 41 41 H 1.09002 * 109.77935 * 57.58413 * 22 13 12 42 42 H 1.09005 * 109.31203 * 281.28477 * 23 10 9 43 43 H 1.08995 * 109.31683 * 40.71451 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8194 2.9162 0.0012 6 8 2.9610 3.7729 0.0006 7 7 5.1210 3.2663 0.0013 8 6 5.4986 4.6818 0.0012 9 6 7.0238 4.8026 0.0020 10 6 7.4124 6.2586 0.0026 11 6 7.6635 6.8139 1.1448 12 6 8.0381 8.2611 1.3031 13 7 8.3334 8.8296 -0.0213 14 6 9.4091 9.6525 -0.2238 15 1 9.8362 9.7499 -1.2109 16 6 9.9505 10.3615 0.8398 17 7 9.2695 10.4916 1.9586 18 14 11.6455 11.1309 0.6831 19 1 11.6443 12.1075 -0.4355 20 1 11.9919 11.8271 1.9483 21 1 12.6479 10.0693 0.4124 22 6 7.4179 8.4792 -1.1212 23 6 7.4805 6.9624 -1.3199 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8340 0.9765 -0.8891 30 1 3.8333 0.9767 0.8908 31 1 5.8075 2.5811 0.0013 32 1 5.0958 5.1653 0.8911 33 1 5.0960 5.1653 -0.8888 34 1 7.4271 4.3190 -0.8877 35 1 7.4262 4.3192 0.8923 36 1 7.5959 6.2045 2.0339 37 1 7.2104 8.8036 1.7600 38 1 8.9215 8.3415 1.9366 39 1 9.6480 10.9868 2.7019 40 1 7.7296 8.9841 -2.0356 41 1 6.4012 8.7758 -0.8635 42 1 8.4140 6.7024 -1.8190 43 1 6.6426 6.6452 -1.9406 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159144048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:58 Heat of formation + Delta-G solvation = -52.528874 kcal Electronic energy + Delta-G solvation = -21552.068199 eV Core-core repulsion = 18212.123167 eV Total energy + Delta-G solvation = -3339.945033 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.91801 -38.14660 -37.69208 -35.39037 -33.56880 -31.94886 -31.37445 -29.90198 -29.16658 -27.45180 -25.10804 -23.18301 -22.99813 -22.43755 -21.02152 -20.61979 -17.62222 -17.36158 -17.18754 -16.79483 -16.06209 -15.54527 -15.34132 -14.97923 -14.45815 -14.29119 -13.98227 -13.60914 -13.44891 -13.14221 -13.11165 -12.77395 -12.59488 -12.20308 -11.98841 -11.78780 -11.62283 -11.54856 -11.40547 -10.99168 -10.88458 -10.71162 -10.32514 -10.25923 -10.07462 -9.91811 -9.78845 -9.52292 -9.16084 -8.63431 -7.90761 -6.70871 -5.76586 -3.15185 2.47732 2.55493 2.98072 3.40138 3.45488 3.46676 3.71403 4.49081 4.51488 4.63361 4.71424 4.84465 4.86140 4.95819 5.11626 5.18161 5.27487 5.29979 5.41673 5.53315 5.57368 5.65865 5.76972 5.80590 6.01766 6.05585 6.16372 6.22917 6.32332 6.42145 6.57668 6.69197 6.81302 6.93016 7.25066 7.31853 7.36636 7.43320 7.76618 7.90103 8.09195 8.41263 9.22560 9.85506 10.44652 11.33793 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.056380 B = 0.002398 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.506696 B =11671.289589 C =11716.696133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.045 3.955 5 C 0.509 3.491 6 O -0.518 6.518 7 N -0.729 5.729 8 C 0.125 3.875 9 C -0.091 4.091 10 C -0.143 4.143 11 C -0.146 4.146 12 C 0.196 3.804 13 N -0.595 5.595 14 C -0.245 4.245 15 H 0.068 0.932 16 C -0.003 4.003 17 N -0.910 5.910 18 Si 0.905 3.095 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.142 3.858 23 C -0.091 4.091 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.399 0.601 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.038 0.962 38 H 0.091 0.909 39 H 0.254 0.746 40 H 0.056 0.944 41 H 0.024 0.976 42 H 0.062 0.938 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.706 -22.430 -3.488 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.035 4.035 5 C 0.294 3.706 6 O -0.392 6.392 7 N -0.383 5.383 8 C 0.003 3.997 9 C -0.129 4.129 10 C -0.144 4.144 11 C -0.165 4.165 12 C 0.071 3.929 13 N -0.319 5.319 14 C -0.374 4.374 15 H 0.086 0.914 16 C -0.200 4.200 17 N -0.555 5.555 18 Si 0.735 3.265 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.016 3.984 23 C -0.130 4.130 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.233 0.767 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.056 0.944 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.042 0.958 42 H 0.080 0.920 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.417 -21.512 -3.338 24.133 hybrid contribution 1.465 -0.297 0.082 1.497 sum -8.952 -21.809 -3.256 23.798 Atomic orbital electron populations 1.21735 0.93342 1.02244 1.03575 1.22552 0.96074 0.83339 1.00156 1.88040 1.18469 1.26367 1.95416 1.22189 0.84060 0.94753 1.02493 1.20239 0.82823 0.90513 0.77072 1.90757 1.49320 1.51737 1.47389 1.45990 1.06747 1.09448 1.76136 1.21457 0.95331 0.80009 1.02934 1.20905 0.93441 0.96374 1.02145 1.20220 1.04777 0.93448 0.95944 1.23128 0.97565 0.99811 0.96032 1.19730 1.00086 0.85060 0.88054 1.44162 1.28488 1.54562 1.04644 1.19142 1.04568 1.18261 0.95467 0.91424 1.24995 0.99240 0.98361 0.97445 1.70009 1.36231 1.44309 1.04955 0.86319 0.84432 0.78911 0.76816 1.20943 1.21649 1.21142 1.20960 0.93392 0.91642 0.92447 1.20759 1.00171 0.98226 0.93858 0.91627 0.91631 0.90958 0.93190 0.93179 0.90320 0.90319 0.76729 0.91183 0.91161 0.91443 0.91518 0.89073 0.94389 0.89113 0.93585 0.92548 0.95846 0.91957 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.06 0.40 6.66 37.16 0.25 0.64 16 3 O -0.36 -4.11 9.88 -55.14 -0.54 -4.65 16 4 C 0.05 0.39 6.42 36.01 0.23 0.62 16 5 C 0.51 6.34 7.91 -10.98 -0.09 6.25 16 6 O -0.52 -9.21 16.50 -14.35 -0.24 -9.45 16 7 N -0.73 -7.50 5.56 -60.30 -0.33 -7.83 16 8 C 0.13 1.62 5.66 -4.04 -0.02 1.60 16 9 C -0.09 -1.15 5.32 -27.88 -0.15 -1.30 16 10 C -0.14 -2.46 5.11 -101.00 -0.52 -2.98 16 11 C -0.15 -2.83 9.47 -35.78 -0.34 -3.17 16 12 C 0.20 4.75 5.25 -5.04 -0.03 4.73 16 13 N -0.60 -15.21 3.01 -173.58 -0.52 -15.73 16 14 C -0.24 -6.80 9.71 -15.05 -0.15 -6.94 16 15 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 16 C 0.00 -0.07 5.01 -17.43 -0.09 -0.16 16 17 N -0.91 -26.55 11.07 55.49 0.61 -25.94 16 18 Si 0.91 21.86 29.58 -169.99 -5.03 16.83 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.14 3.04 6.57 -3.53 -0.02 3.02 16 23 C -0.09 -1.62 5.95 -28.18 -0.17 -1.78 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.40 2.66 8.47 -40.82 -0.35 2.32 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 34 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 35 H 0.07 0.78 7.78 -51.93 -0.40 0.37 16 36 H 0.09 1.56 7.73 -52.49 -0.41 1.16 16 37 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.09 2.43 6.40 -51.93 -0.33 2.10 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 40 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.82 8.08 -51.93 -0.42 0.40 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -34.12 354.60 -8.77 -42.89 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.36 Total: -1.37 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -0.70 Total: -0.09 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -0.24 Total: -49.51 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.78 Total: -14.10 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.12 -8.77 -42.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159144048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.637 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds