Wall clock time and date at job start Tue Mar 31 2020 05:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00446 * 2 1 4 4 H 1.09004 * 109.47118 * 29.99642 * 3 2 1 5 5 C 1.52999 * 109.46808 * 270.00216 * 3 2 1 6 6 C 1.50694 * 109.47495 * 150.00036 * 3 2 1 7 7 O 1.21277 * 120.00436 * 4.99656 * 6 3 2 8 8 N 1.34785 * 120.00122 * 185.00160 * 6 3 2 9 9 C 1.46491 * 120.00128 * 179.97438 * 8 6 3 10 10 C 1.52996 * 109.47247 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.47542 * 180.02562 * 10 9 8 12 12 C 1.29447 * 117.69654 * 94.99904 * 11 10 9 13 13 C 1.50324 * 123.65210 * 180.86305 * 12 11 10 14 14 N 1.47002 * 109.16507 * 349.01855 * 13 12 11 15 15 C 1.36932 * 121.37584 * 222.97095 * 14 13 12 16 16 H 1.08004 * 120.00380 * 155.98219 * 15 14 13 17 17 C 1.38820 * 120.00223 * 335.97714 * 15 14 13 18 18 N 1.31619 * 119.99753 * 344.49837 * 17 15 14 19 19 Si 1.86793 * 120.00080 * 164.49508 * 17 15 14 20 20 H 1.48505 * 109.47102 * 94.45938 * 19 17 15 21 21 H 1.48501 * 109.47081 * 214.45607 * 19 17 15 22 22 H 1.48495 * 109.47451 * 334.45873 * 19 17 15 23 23 C 1.47343 * 117.24885 * 42.95135 * 14 13 12 24 24 C 1.49968 * 117.69240 * 274.74134 * 11 10 9 25 25 H 1.08998 * 109.47424 * 60.00253 * 1 2 3 26 26 H 1.09003 * 109.47466 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47098 * 300.00019 * 1 2 3 28 28 H 1.09004 * 109.47687 * 60.00009 * 5 3 2 29 29 H 1.09000 * 109.47055 * 179.97438 * 5 3 2 30 30 H 1.09003 * 109.47456 * 299.99229 * 5 3 2 31 31 H 0.97002 * 119.99418 * 359.97438 * 8 6 3 32 32 H 1.08998 * 109.47204 * 60.00095 * 9 8 6 33 33 H 1.08997 * 109.47186 * 299.99570 * 9 8 6 34 34 H 1.08999 * 109.47395 * 60.00091 * 10 9 8 35 35 H 1.09006 * 109.47354 * 300.00441 * 10 9 8 36 36 H 1.08002 * 118.17454 * 0.88176 * 12 11 10 37 37 H 1.08997 * 109.52598 * 108.92691 * 13 12 11 38 38 H 1.09002 * 109.51974 * 229.11595 * 13 12 11 39 39 H 0.96999 * 120.00111 * 180.02562 * 18 17 15 40 40 H 1.08995 * 109.77607 * 57.80862 * 23 14 13 41 41 H 1.09001 * 109.77788 * 178.61770 * 23 14 13 42 42 H 1.09006 * 109.31393 * 281.28576 * 24 11 10 43 43 H 1.09000 * 109.31539 * 40.71248 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7712 -1.4425 6 6 3.3387 1.2638 0.7104 7 8 3.7897 0.2045 1.0914 8 7 4.0255 2.4039 0.9223 9 6 5.3166 2.3636 1.6134 10 6 5.8812 3.7814 1.7225 11 6 7.2096 3.7399 2.4328 12 6 8.2793 3.6879 1.7057 13 6 9.6699 3.6231 2.2731 14 7 9.6150 3.8931 3.7170 15 6 10.5315 4.7088 4.3251 16 1 10.2824 5.2045 5.2518 17 6 11.7809 4.8987 3.7506 18 7 12.2031 4.0818 2.8089 19 14 12.8626 6.3135 4.3139 20 1 13.7978 5.8342 5.3633 21 1 13.6386 6.8333 3.1594 22 1 12.0117 7.3976 4.8668 23 6 8.5330 3.2500 4.4829 24 6 7.1994 3.7676 3.9322 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.2568 1.8014 -1.9564 29 1 2.6607 2.7671 -1.4426 30 1 2.8830 1.0773 -1.9564 31 1 3.6649 3.2512 0.6173 32 1 6.0104 1.7389 1.0509 33 1 5.1814 1.9482 2.6120 34 1 5.1875 4.4064 2.2848 35 1 6.0164 4.1965 0.7237 36 1 8.1665 3.6916 0.6316 37 1 10.0865 2.6302 2.1037 38 1 10.2970 4.3701 1.7864 39 1 13.0763 4.2142 2.4077 40 1 8.5902 2.1680 4.3648 41 1 8.6215 3.5118 5.5373 42 1 7.0371 4.7903 4.2728 43 1 6.3904 3.1359 4.2990 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159452055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:47 Heat of formation + Delta-G solvation = -50.123897 kcal Electronic energy + Delta-G solvation = -21937.529382 eV Core-core repulsion = 18597.688638 eV Total energy + Delta-G solvation = -3339.840745 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.12957 -38.14438 -37.63007 -35.39078 -33.65219 -32.13353 -31.15232 -29.80007 -28.59200 -27.17042 -25.57576 -24.19431 -22.91585 -22.38025 -20.98064 -20.47213 -17.71690 -17.54737 -17.25612 -16.15271 -15.90099 -15.35041 -15.24946 -14.96536 -14.75401 -14.06362 -13.99255 -13.60305 -13.56950 -13.28426 -13.05308 -12.79701 -12.60070 -12.26366 -12.11822 -11.98455 -11.57836 -11.52247 -11.39829 -10.99649 -10.89843 -10.70783 -10.35148 -10.29845 -10.23278 -9.80423 -9.71581 -9.50139 -9.15130 -8.63832 -7.90884 -6.70442 -5.76950 -3.15448 2.47755 2.62105 2.99590 3.38705 3.45553 3.47918 3.68477 4.37523 4.51253 4.52610 4.62583 4.90027 4.98512 5.10378 5.12578 5.18012 5.27843 5.30942 5.31330 5.41678 5.57485 5.65929 5.68950 5.80707 6.01799 6.05942 6.16484 6.22671 6.32753 6.41246 6.57419 6.66879 6.80895 6.92986 7.25269 7.32189 7.36978 7.43314 7.76894 7.90121 8.09781 8.41151 9.22578 9.85562 10.44371 11.33507 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.049130 B = 0.002660 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.779938 B =10522.325249 C =10642.975586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.069 3.931 4 H 0.086 0.914 5 C -0.170 4.170 6 C 0.510 3.490 7 O -0.518 6.518 8 N -0.728 5.728 9 C 0.125 3.875 10 C -0.091 4.091 11 C -0.143 4.143 12 C -0.146 4.146 13 C 0.196 3.804 14 N -0.596 5.596 15 C -0.244 4.244 16 H 0.068 0.932 17 C -0.003 4.003 18 N -0.909 5.909 19 Si 0.904 3.096 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.143 3.857 24 C -0.091 4.091 25 H 0.043 0.957 26 H 0.090 0.910 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.398 0.602 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.038 0.962 38 H 0.091 0.909 39 H 0.253 0.747 40 H 0.024 0.976 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.737 -1.289 -7.507 23.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.008 3.992 4 H 0.103 0.897 5 C -0.228 4.228 6 C 0.294 3.706 7 O -0.392 6.392 8 N -0.382 5.382 9 C 0.002 3.998 10 C -0.129 4.129 11 C -0.144 4.144 12 C -0.165 4.165 13 C 0.071 3.929 14 N -0.319 5.319 15 C -0.374 4.374 16 H 0.086 0.914 17 C -0.201 4.201 18 N -0.555 5.555 19 Si 0.734 3.266 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.016 3.984 24 C -0.130 4.130 25 H 0.062 0.938 26 H 0.109 0.891 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.232 0.768 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.056 0.944 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.112 -2.239 -7.294 23.391 hybrid contribution 0.173 1.398 -0.048 1.409 sum -21.939 -0.842 -7.342 23.150 Atomic orbital electron populations 1.22887 0.80644 1.03306 0.99981 1.88067 1.19624 1.25149 1.94919 1.21946 0.93619 0.86872 0.96781 0.89661 1.22232 1.03429 1.02128 0.95032 1.20369 0.86191 0.84271 0.79778 1.90747 1.69088 1.29722 1.49619 1.46037 1.22501 1.09123 1.60517 1.21458 0.82908 0.98010 0.97413 1.20907 0.96543 0.94970 1.00442 1.20221 0.92693 1.05971 0.95510 1.23123 0.97649 0.97473 0.98293 1.19705 0.89053 1.00124 0.83992 1.44140 1.30606 1.54448 1.02723 1.19182 0.92144 1.18884 1.07178 0.91427 1.24996 0.96363 0.98935 0.99761 1.70021 1.19312 1.36348 1.29800 0.86246 0.80385 0.82310 0.77650 1.21515 1.21601 1.20528 1.20993 0.87419 0.94853 0.95125 1.20791 0.99312 1.00687 0.92216 0.93843 0.89106 0.93825 0.91236 0.90845 0.90928 0.76794 0.91182 0.91191 0.91468 0.91519 0.89066 0.94405 0.89152 0.93655 0.95776 0.92567 0.91925 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.28 16 2 O -0.36 -4.05 9.89 -55.09 -0.54 -4.60 16 3 C 0.07 0.63 3.13 -27.89 -0.09 0.54 16 4 H 0.09 0.53 7.79 -51.93 -0.40 0.13 16 5 C -0.17 -1.15 9.48 37.16 0.35 -0.80 16 6 C 0.51 6.45 7.18 -10.98 -0.08 6.37 16 7 O -0.52 -9.25 16.51 -14.30 -0.24 -9.49 16 8 N -0.73 -7.57 5.52 -60.30 -0.33 -7.91 16 9 C 0.12 1.62 5.66 -4.05 -0.02 1.59 16 10 C -0.09 -1.15 5.32 -27.88 -0.15 -1.30 16 11 C -0.14 -2.46 5.11 -100.99 -0.52 -2.97 16 12 C -0.15 -2.83 9.47 -35.78 -0.34 -3.16 16 13 C 0.20 4.76 5.23 -5.10 -0.03 4.74 16 14 N -0.60 -15.22 3.01 -173.56 -0.52 -15.74 16 15 C -0.24 -6.78 9.71 -15.06 -0.15 -6.92 16 16 H 0.07 1.83 7.88 -52.48 -0.41 1.42 16 17 C 0.00 -0.08 5.01 -17.43 -0.09 -0.17 16 18 N -0.91 -26.54 11.08 55.49 0.61 -25.93 16 19 Si 0.90 21.83 29.58 -169.99 -5.03 16.80 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.14 3.04 6.59 -3.43 -0.02 3.02 16 24 C -0.09 -1.61 5.95 -28.09 -0.17 -1.78 16 25 H 0.04 0.21 7.87 -51.93 -0.41 -0.20 16 26 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.25 8.09 -51.93 -0.42 -0.17 16 28 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 29 H 0.07 0.37 7.92 -51.93 -0.41 -0.05 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.40 2.76 8.26 -40.82 -0.34 2.42 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 34 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 35 H 0.07 0.78 7.78 -51.93 -0.40 0.37 16 36 H 0.09 1.56 7.73 -52.49 -0.41 1.15 16 37 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 2.42 6.41 -51.93 -0.33 2.09 16 39 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 LS Contribution 352.58 15.07 5.31 5.31 Total: -1.00 -34.04 352.58 -8.23 -42.26 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -7.29 Total: -1.16 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -0.20 Total: 0.44 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.24 Total: -49.57 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.78 Total: -14.09 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.04 -8.23 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159452055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.860 kcal (2) G-P(sol) polarization free energy of solvation -34.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds