Wall clock time and date at job start Tue Mar 31 2020 05:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47300 * 2 1 4 4 C 1.53008 * 109.46703 * 240.00527 * 2 1 3 5 5 C 1.53000 * 109.46798 * 174.99975 * 4 2 1 6 6 C 1.50701 * 109.47147 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99944 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00023 * 179.97438 * 6 5 4 9 9 N 1.31505 * 120.00218 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99828 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47163 * 60.00183 * 10 8 6 12 12 H 1.48499 * 109.47154 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47580 * 300.00292 * 10 8 6 14 14 N 1.46891 * 109.47262 * 120.00898 * 2 1 3 15 15 C 1.46855 * 111.00066 * 294.99866 * 14 2 1 16 16 C 1.53143 * 109.45497 * 186.34415 * 15 14 2 17 17 C 1.52548 * 109.31890 * 301.71398 * 16 15 14 18 18 C 1.53620 * 110.33123 * 178.58753 * 17 16 15 19 19 O 1.45844 * 103.93828 * 118.89511 * 18 17 16 20 20 C 1.33854 * 109.44309 * 359.93029 * 19 18 17 21 21 O 1.21512 * 123.09123 * 179.97438 * 20 19 18 22 22 N 1.34172 * 113.81397 * 0.02562 * 20 19 18 23 23 C 1.52555 * 110.46983 * 56.32789 * 17 16 15 24 24 C 1.46852 * 111.00378 * 59.34700 * 14 2 1 25 25 H 1.08996 * 109.46790 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46722 * 299.99696 * 1 2 3 27 27 H 1.09004 * 109.46770 * 59.99155 * 1 2 3 28 28 H 1.08994 * 109.47544 * 295.00143 * 4 2 1 29 29 H 1.09004 * 109.46849 * 55.00691 * 4 2 1 30 30 H 1.09000 * 109.47258 * 299.99906 * 5 4 2 31 31 H 1.08999 * 109.47409 * 60.00278 * 5 4 2 32 32 H 0.96998 * 120.00596 * 179.97438 * 9 8 6 33 33 H 1.08996 * 109.47752 * 66.34767 * 15 14 2 34 34 H 1.08998 * 109.47473 * 306.34064 * 15 14 2 35 35 H 1.08995 * 109.50027 * 181.75432 * 16 15 14 36 36 H 1.09002 * 109.52060 * 61.67879 * 16 15 14 37 37 H 1.09002 * 110.55858 * 0.24221 * 18 17 16 38 38 H 1.09005 * 110.56060 * 237.54951 * 18 17 16 39 39 H 0.97001 * 125.66280 * 179.97438 * 22 20 19 40 40 H 1.09003 * 109.49820 * 63.62743 * 23 17 16 41 41 H 1.09002 * 109.50178 * 183.72251 * 23 17 16 42 42 H 1.09001 * 109.47486 * 293.65827 * 24 14 2 43 43 H 1.09007 * 109.47216 * 53.66416 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3139 6 6 4.0672 -1.3241 -2.5441 7 1 3.3687 -1.8044 -3.2133 8 6 5.4184 -1.3603 -2.8159 9 7 6.2689 -0.7750 -2.0013 10 14 6.0410 -2.2408 -4.3411 11 1 5.4485 -1.6149 -5.5505 12 1 7.5209 -2.1351 -4.4043 13 1 5.6485 -3.6717 -4.2816 14 7 2.0197 -0.6926 1.1992 15 6 1.6489 0.0386 2.4176 16 6 2.3080 -0.6241 3.6307 17 6 1.8644 -2.0813 3.7128 18 6 2.5403 -2.7788 4.9030 19 8 1.4254 -3.1910 5.7481 20 6 0.2732 -2.8136 5.1810 21 8 -0.8139 -3.0333 5.6776 22 7 0.4289 -2.1713 4.0133 23 6 2.1914 -2.8125 2.4145 24 6 1.5362 -2.0786 1.2409 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 1.7516 -1.7714 -1.2059 29 1 1.6054 -0.2615 -2.1371 30 1 3.8532 0.4370 -1.3574 31 1 3.9995 -1.0729 -0.4262 32 1 7.2196 -0.8008 -2.1923 33 1 0.5657 0.0199 2.5372 34 1 1.9880 1.0715 2.3389 35 1 2.0084 -0.1008 4.5387 36 1 3.3921 -0.5793 3.5260 37 1 3.1884 -2.0835 5.4365 38 1 3.1069 -3.6471 4.5665 39 1 -0.2874 -1.8245 3.4587 40 1 3.2718 -2.8351 2.2719 41 1 1.8093 -3.8321 2.4649 42 1 0.4537 -2.0822 1.3688 43 1 1.7936 -2.5815 0.3086 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172497888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:50 Heat of formation + Delta-G solvation = -78.962224 kcal Electronic energy + Delta-G solvation = -23443.699589 eV Core-core repulsion = 20102.608320 eV Total energy + Delta-G solvation = -3341.091269 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.06423 -39.23885 -37.34210 -35.96651 -33.55458 -32.50126 -31.19808 -30.65883 -29.15283 -27.03233 -25.22505 -23.64677 -23.22813 -22.26937 -21.37664 -20.25742 -19.04221 -18.13114 -16.95475 -16.51881 -16.21469 -15.88042 -15.03845 -14.92674 -14.50527 -14.49437 -14.26029 -14.22030 -13.73005 -13.39862 -13.12738 -12.93619 -12.49208 -12.25353 -12.05499 -11.61390 -11.56249 -11.50027 -11.22739 -11.06111 -10.89325 -10.76096 -10.74292 -10.52020 -10.49512 -10.16126 -9.71068 -9.45706 -9.27994 -8.97675 -8.30866 -7.93805 -5.95795 -3.97513 2.55608 2.59808 3.33159 3.35120 3.38164 3.40313 3.83533 4.06130 4.29465 4.42382 4.47770 4.90271 4.98803 5.05311 5.10846 5.21537 5.27769 5.31780 5.37071 5.39881 5.51792 5.56812 5.58897 5.64434 5.83198 5.90173 5.95813 6.08921 6.16101 6.19029 6.27331 6.56095 6.61244 6.77156 7.10989 7.17324 7.36765 7.40954 7.76858 7.94461 7.97407 8.12379 8.48821 9.11007 9.65779 11.14943 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024276 B = 0.004049 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.138801 B = 6913.845421 C = 7427.524434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.083 3.917 3 H 0.079 0.921 4 C -0.105 4.105 5 C 0.031 3.969 6 C -0.522 4.522 7 H 0.050 0.950 8 C 0.059 3.941 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.516 5.516 15 C 0.055 3.945 16 C -0.117 4.117 17 C 0.124 3.876 18 C 0.049 3.951 19 O -0.331 6.331 20 C 0.646 3.354 21 O -0.532 6.532 22 N -0.723 5.723 23 C -0.118 4.118 24 C 0.052 3.948 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.009 0.991 31 H 0.031 0.969 32 H 0.259 0.741 33 H 0.029 0.971 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.432 0.568 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.028 0.972 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.097 -0.201 11.535 14.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.025 4.025 3 H 0.098 0.902 4 C -0.143 4.143 5 C -0.006 4.006 6 C -0.560 4.560 7 H 0.068 0.932 8 C -0.142 4.142 9 N -0.533 5.533 10 Si 0.714 3.286 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.240 5.240 15 C -0.073 4.073 16 C -0.156 4.156 17 C 0.037 3.963 18 C -0.026 4.026 19 O -0.241 6.241 20 C 0.399 3.601 21 O -0.418 6.418 22 N -0.396 5.396 23 C -0.157 4.157 24 C -0.076 4.076 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.275 0.725 40 H 0.115 0.885 41 H 0.092 0.908 42 H 0.046 0.954 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.774 -0.487 12.129 14.414 hybrid contribution -0.680 -0.168 -1.289 1.466 sum -8.453 -0.655 10.840 13.762 Atomic orbital electron populations 1.22521 0.98874 1.01607 1.01508 1.21870 0.91029 0.98738 0.90896 0.90243 1.21779 1.00943 0.98283 0.93258 1.18987 0.87903 0.96758 0.96958 1.21295 0.91848 1.34318 1.08586 0.93212 1.24969 0.97119 0.95680 0.96426 1.69952 1.02264 1.44145 1.36938 0.86765 0.77648 0.80274 0.83901 1.20411 1.21362 1.20377 1.62034 1.59421 1.01312 1.01255 1.22051 0.97009 0.98422 0.89844 1.21913 1.02881 0.92266 0.98495 1.21495 0.80627 0.97935 0.96242 1.24475 0.87884 1.01204 0.89068 1.87285 1.15955 1.74323 1.46568 1.18569 0.84170 0.77081 0.80282 1.91061 1.22502 1.60890 1.67355 1.46171 1.08859 1.61130 1.23395 1.21940 1.03626 0.98230 0.91873 1.22136 0.95941 0.90066 0.99411 0.92745 0.93438 0.92158 0.93250 0.93219 0.97229 0.95045 0.93129 0.95319 0.90220 0.90924 0.88647 0.87306 0.87161 0.72511 0.88463 0.90827 0.95425 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.28 8.51 37.16 0.32 -1.96 16 2 C 0.08 1.23 2.35 -67.71 -0.16 1.07 16 3 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 4 C -0.10 -1.97 4.44 -26.73 -0.12 -2.09 16 5 C 0.03 0.75 4.86 -27.88 -0.14 0.62 16 6 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 7 H 0.05 1.33 7.74 -52.48 -0.41 0.93 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 10 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 14 N -0.52 -6.99 4.08 -226.54 -0.92 -7.92 16 15 C 0.06 0.60 4.92 -3.78 -0.02 0.58 16 16 C -0.12 -1.06 4.91 -26.89 -0.13 -1.19 16 17 C 0.12 1.14 0.89 -131.72 -0.12 1.02 16 18 C 0.05 0.40 7.50 37.48 0.28 0.68 16 19 O -0.33 -4.01 11.10 -38.04 -0.42 -4.43 16 20 C 0.65 8.64 9.17 53.78 0.49 9.13 16 21 O -0.53 -9.17 18.04 -19.11 -0.34 -9.51 16 22 N -0.72 -7.49 5.23 -52.71 -0.28 -7.77 16 23 C -0.12 -1.22 4.91 -26.89 -0.13 -1.35 16 24 C 0.05 0.65 4.54 -3.78 -0.02 0.63 16 25 H 0.05 0.65 6.54 -51.93 -0.34 0.31 16 26 H 0.05 0.52 6.66 -51.93 -0.35 0.17 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.91 6.04 -51.93 -0.31 0.60 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.03 0.81 7.75 -51.93 -0.40 0.41 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.03 0.29 6.07 -51.93 -0.32 -0.02 16 34 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.11 0.68 7.71 -51.93 -0.40 0.28 16 38 H 0.11 0.74 7.71 -51.93 -0.40 0.34 16 39 H 0.43 4.17 7.85 -40.82 -0.32 3.85 16 40 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.03 0.32 5.97 -51.93 -0.31 0.01 16 43 H 0.09 1.39 5.91 -51.93 -0.31 1.08 16 LS Contribution 331.57 15.07 5.00 5.00 Total: -1.00 -32.03 331.57 -8.20 -40.23 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.79 Total: -0.46 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -0.15 Total: -5.91 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: -0.46 Total: -41.12 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.77 Total: -13.94 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.03 -8.20 -40.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.732 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds