Wall clock time and date at job start Tue Mar 31 2020 05:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46990 * 2 1 4 4 C 1.52993 * 109.47112 * 120.00803 * 2 1 3 5 5 C 1.52995 * 109.47313 * 183.96620 * 4 2 1 6 6 C 1.50696 * 109.47609 * 179.97438 * 5 4 2 7 7 H 1.07996 * 119.99725 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00220 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99972 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99921 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47444 * 90.00071 * 10 8 6 12 12 H 1.48509 * 109.47036 * 209.99919 * 10 8 6 13 13 H 1.48498 * 109.47123 * 329.99641 * 10 8 6 14 14 N 1.46896 * 109.46645 * 240.00385 * 2 1 3 15 15 C 1.46855 * 111.00333 * 306.53269 * 14 2 1 16 16 C 1.53139 * 109.47109 * 186.32624 * 15 14 2 17 17 C 1.52563 * 109.31006 * 301.68937 * 16 15 14 18 18 C 1.53625 * 110.31303 * 178.56373 * 17 16 15 19 19 O 1.45842 * 103.79104 * 118.85181 * 18 17 16 20 20 C 1.33849 * 109.44833 * 359.97438 * 19 18 17 21 21 O 1.21519 * 123.08959 * 179.97438 * 20 19 18 22 22 N 1.34162 * 113.82479 * 0.02562 * 20 19 18 23 23 C 1.52555 * 110.44481 * 56.34209 * 17 16 15 24 24 C 1.46857 * 111.00161 * 70.83933 * 14 2 1 25 25 H 1.09006 * 109.46452 * 299.99680 * 1 2 3 26 26 H 1.08998 * 109.47145 * 59.99394 * 1 2 3 27 27 H 1.08999 * 109.47704 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47254 * 303.96278 * 4 2 1 29 29 H 1.08997 * 109.47646 * 63.96303 * 4 2 1 30 30 H 1.09005 * 109.46962 * 299.99576 * 5 4 2 31 31 H 1.09007 * 109.47130 * 59.99408 * 5 4 2 32 32 H 0.96998 * 119.99909 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.47175 * 306.32292 * 15 14 2 34 34 H 1.08998 * 109.47638 * 66.32691 * 15 14 2 35 35 H 1.08994 * 109.50450 * 181.73240 * 16 15 14 36 36 H 1.09007 * 109.49522 * 61.63576 * 16 15 14 37 37 H 1.08997 * 110.56153 * 237.42269 * 18 17 16 38 38 H 1.08998 * 110.56330 * 0.27705 * 18 17 16 39 39 H 0.96998 * 125.67905 * 179.97438 * 22 20 19 40 40 H 1.09003 * 109.49332 * 183.70016 * 23 17 16 41 41 H 1.08999 * 109.49917 * 63.60646 * 23 17 16 42 42 H 1.08997 * 109.47407 * 293.67330 * 24 14 2 43 43 H 1.09002 * 109.46954 * 53.68328 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5667 -0.6356 1.3000 6 6 4.0691 -1.3456 2.5307 7 1 3.3693 -1.8111 3.2089 8 6 5.4220 -1.4009 2.7907 9 7 6.2741 -0.8336 1.9650 10 14 6.0446 -2.2816 4.3158 11 1 6.3005 -3.7086 3.9938 12 1 7.3048 -1.6444 4.7757 13 1 5.0238 -2.1921 5.3906 14 7 2.0196 -0.6924 -1.1995 15 6 1.4255 -2.0305 -1.3141 16 6 2.0747 -2.7789 -2.4818 17 6 1.8731 -1.9813 -3.7667 18 6 2.5472 -2.6947 -4.9485 19 8 1.4432 -2.9810 -5.8574 20 6 0.3009 -2.5263 -5.3282 21 8 -0.7758 -2.6347 -5.8811 22 7 0.4540 -1.9391 -4.1317 23 6 2.4316 -0.5703 -3.6111 24 6 1.7707 0.1061 -2.4066 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6198 -0.2503 2.1378 29 1 1.7359 -1.7675 1.2142 30 1 3.9869 -1.1067 0.4114 31 1 3.8709 0.4106 1.3349 32 1 7.2259 -0.8728 2.1478 33 1 1.5940 -2.5832 -0.3898 34 1 0.3542 -1.9385 -1.4923 35 1 1.6128 -3.7606 -2.5867 36 1 3.1413 -2.8968 -2.2904 37 1 3.2759 -2.0395 -5.4259 38 1 3.0206 -3.6192 -4.6181 39 1 -0.2562 -1.5509 -3.5970 40 1 2.2213 0.0056 -4.5124 41 1 3.5091 -0.6207 -3.4542 42 1 0.6968 0.1825 -2.5767 43 1 2.1898 1.1037 -2.2750 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172497892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:52 Heat of formation + Delta-G solvation = -79.515835 kcal Electronic energy + Delta-G solvation = -23432.339342 eV Core-core repulsion = 20091.224067 eV Total energy + Delta-G solvation = -3341.115275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.08880 -39.22859 -37.34364 -35.97398 -33.56138 -32.50334 -31.17676 -30.68431 -29.14294 -27.03780 -25.20632 -23.67145 -23.22757 -22.27678 -21.38101 -20.23106 -19.07146 -18.14090 -16.96417 -16.51897 -16.20799 -15.86380 -15.04647 -14.94669 -14.49753 -14.48158 -14.25454 -14.21750 -13.73980 -13.39550 -13.10551 -12.94933 -12.47931 -12.25233 -12.08516 -11.62487 -11.54348 -11.51150 -11.21589 -11.06770 -10.91208 -10.76632 -10.74779 -10.51983 -10.49559 -10.14272 -9.71133 -9.46506 -9.27741 -8.96432 -8.30456 -7.93233 -5.95425 -3.96834 2.55602 2.59170 3.32057 3.35320 3.38903 3.41791 3.83383 4.05569 4.29362 4.41994 4.48218 4.90279 4.98532 5.05696 5.10023 5.21549 5.27410 5.31152 5.36395 5.40383 5.51541 5.56165 5.58953 5.64196 5.83725 5.89854 5.95424 6.08756 6.13719 6.19102 6.27987 6.56553 6.61038 6.76759 7.10798 7.18876 7.36511 7.41310 7.77879 7.93959 7.98716 8.13682 8.49821 9.11980 9.66399 11.15381 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.004024 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.854582 B = 6956.196713 C = 7478.570490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.083 3.917 3 H 0.078 0.922 4 C -0.102 4.102 5 C 0.031 3.969 6 C -0.520 4.520 7 H 0.050 0.950 8 C 0.058 3.942 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.516 5.516 15 C 0.054 3.946 16 C -0.119 4.119 17 C 0.123 3.877 18 C 0.049 3.951 19 O -0.331 6.331 20 C 0.646 3.354 21 O -0.532 6.532 22 N -0.723 5.723 23 C -0.117 4.117 24 C 0.056 3.944 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.032 0.968 31 H 0.009 0.991 32 H 0.258 0.742 33 H 0.091 0.909 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.432 0.568 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.028 0.972 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.173 -0.225 -11.411 14.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.025 4.025 3 H 0.097 0.903 4 C -0.140 4.140 5 C -0.006 4.006 6 C -0.559 4.559 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.240 5.240 15 C -0.074 4.074 16 C -0.157 4.157 17 C 0.036 3.964 18 C -0.026 4.026 19 O -0.241 6.241 20 C 0.399 3.601 21 O -0.418 6.418 22 N -0.395 5.395 23 C -0.156 4.156 24 C -0.073 4.073 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.275 0.725 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.046 0.954 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.856 -0.501 -12.006 14.357 hybrid contribution -0.651 -0.099 1.238 1.402 sum -8.507 -0.600 -10.768 13.736 Atomic orbital electron populations 1.22519 0.98812 1.01673 1.01440 1.21871 0.91066 0.98597 0.91004 0.90341 1.21727 1.00911 0.98223 0.93155 1.18985 0.87904 0.96734 0.96988 1.21334 0.91699 1.34591 1.08269 0.93172 1.24976 0.97137 0.95723 0.96417 1.69971 1.02055 1.44603 1.36703 0.86706 0.78315 0.79846 0.83758 1.20786 1.21329 1.20047 1.62040 1.58444 1.01918 1.01575 1.22106 0.95213 0.90944 0.99129 1.21948 1.03964 0.97726 0.92080 1.21432 0.81042 0.97961 0.95931 1.24485 0.88215 1.02329 0.87544 1.87282 1.17240 1.74878 1.44743 1.18577 0.84020 0.76834 0.80687 1.91063 1.23159 1.62143 1.65443 1.46089 1.10095 1.62367 1.20922 1.21921 1.02327 0.92864 0.98475 1.22050 0.97547 0.97702 0.89970 0.92158 0.93574 0.92602 0.93275 0.93386 0.94978 0.97294 0.93211 0.89040 0.95331 0.90847 0.88475 0.87258 0.87155 0.72486 0.90914 0.88601 0.95440 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.27 8.44 37.16 0.31 -1.95 16 2 C 0.08 1.23 2.32 -67.72 -0.16 1.07 16 3 H 0.08 1.23 7.96 -51.93 -0.41 0.81 16 4 C -0.10 -1.93 4.54 -26.74 -0.12 -2.05 16 5 C 0.03 0.75 4.85 -27.89 -0.14 0.62 16 6 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 7 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 10 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 N -0.52 -6.99 3.99 -226.55 -0.90 -7.90 16 15 C 0.05 0.66 4.42 -3.78 -0.02 0.64 16 16 C -0.12 -1.21 4.91 -26.88 -0.13 -1.34 16 17 C 0.12 1.13 0.88 -131.90 -0.12 1.02 16 18 C 0.05 0.40 7.51 37.48 0.28 0.69 16 19 O -0.33 -4.00 11.10 -38.03 -0.42 -4.42 16 20 C 0.65 8.60 9.16 53.78 0.49 9.10 16 21 O -0.53 -9.14 18.04 -19.12 -0.34 -9.48 16 22 N -0.72 -7.44 5.20 -52.90 -0.28 -7.71 16 23 C -0.12 -1.08 4.91 -26.89 -0.13 -1.21 16 24 C 0.06 0.61 5.04 -3.78 -0.02 0.59 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.50 6.86 -51.93 -0.36 0.15 16 27 H 0.05 0.67 6.47 -51.93 -0.34 0.33 16 28 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 29 H 0.05 0.89 6.28 -51.93 -0.33 0.57 16 30 H 0.03 0.83 7.72 -51.93 -0.40 0.43 16 31 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 33 H 0.09 1.29 6.16 -51.93 -0.32 0.97 16 34 H 0.03 0.32 5.90 -51.93 -0.31 0.01 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 37 H 0.11 0.68 7.71 -51.93 -0.40 0.28 16 38 H 0.11 0.73 7.71 -51.93 -0.40 0.33 16 39 H 0.43 4.14 7.81 -40.82 -0.32 3.82 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.03 0.28 6.22 -51.93 -0.32 -0.04 16 43 H 0.08 0.90 8.00 -51.93 -0.42 0.49 16 LS Contribution 331.89 15.07 5.00 5.00 Total: -1.00 -32.14 331.89 -8.20 -40.34 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.82 Total: -0.70 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -0.15 Total: -5.90 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: -0.44 Total: -41.08 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.77 Total: -13.90 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.14 -8.20 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.173 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds