Wall clock time and date at job start Tue Mar 31 2020 05:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46990 * 2 1 4 4 C 1.52993 * 109.47112 * 120.00803 * 2 1 3 5 5 C 1.52995 * 109.47313 * 183.96620 * 4 2 1 6 6 C 1.50696 * 109.47609 * 179.97438 * 5 4 2 7 7 H 1.07996 * 119.99725 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00220 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99972 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99921 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47444 * 90.00071 * 10 8 6 12 12 H 1.48509 * 109.47036 * 209.99919 * 10 8 6 13 13 H 1.48498 * 109.47123 * 329.99641 * 10 8 6 14 14 N 1.46896 * 109.46645 * 240.00385 * 2 1 3 15 15 C 1.46855 * 111.00333 * 306.53269 * 14 2 1 16 16 C 1.53139 * 109.47109 * 186.32624 * 15 14 2 17 17 C 1.52563 * 109.31006 * 301.68937 * 16 15 14 18 18 C 1.53625 * 110.31303 * 178.56373 * 17 16 15 19 19 O 1.45842 * 103.79104 * 118.85181 * 18 17 16 20 20 C 1.33849 * 109.44833 * 359.97438 * 19 18 17 21 21 O 1.21519 * 123.08959 * 179.97438 * 20 19 18 22 22 N 1.34162 * 113.82479 * 0.02562 * 20 19 18 23 23 C 1.52555 * 110.44481 * 56.34209 * 17 16 15 24 24 C 1.46857 * 111.00161 * 70.83933 * 14 2 1 25 25 H 1.09006 * 109.46452 * 299.99680 * 1 2 3 26 26 H 1.08998 * 109.47145 * 59.99394 * 1 2 3 27 27 H 1.08999 * 109.47704 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47254 * 303.96278 * 4 2 1 29 29 H 1.08997 * 109.47646 * 63.96303 * 4 2 1 30 30 H 1.09005 * 109.46962 * 299.99576 * 5 4 2 31 31 H 1.09007 * 109.47130 * 59.99408 * 5 4 2 32 32 H 0.96998 * 119.99909 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.47175 * 306.32292 * 15 14 2 34 34 H 1.08998 * 109.47638 * 66.32691 * 15 14 2 35 35 H 1.08994 * 109.50450 * 181.73240 * 16 15 14 36 36 H 1.09007 * 109.49522 * 61.63576 * 16 15 14 37 37 H 1.08997 * 110.56153 * 237.42269 * 18 17 16 38 38 H 1.08998 * 110.56330 * 0.27705 * 18 17 16 39 39 H 0.96998 * 125.67905 * 179.97438 * 22 20 19 40 40 H 1.09003 * 109.49332 * 183.70016 * 23 17 16 41 41 H 1.08999 * 109.49917 * 63.60646 * 23 17 16 42 42 H 1.08997 * 109.47407 * 293.67330 * 24 14 2 43 43 H 1.09002 * 109.46954 * 53.68328 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5667 -0.6356 1.3000 6 6 4.0691 -1.3456 2.5307 7 1 3.3693 -1.8111 3.2089 8 6 5.4220 -1.4009 2.7907 9 7 6.2741 -0.8336 1.9650 10 14 6.0446 -2.2816 4.3158 11 1 6.3005 -3.7086 3.9938 12 1 7.3048 -1.6444 4.7757 13 1 5.0238 -2.1921 5.3906 14 7 2.0196 -0.6924 -1.1995 15 6 1.4255 -2.0305 -1.3141 16 6 2.0747 -2.7789 -2.4818 17 6 1.8731 -1.9813 -3.7667 18 6 2.5472 -2.6947 -4.9485 19 8 1.4432 -2.9810 -5.8574 20 6 0.3009 -2.5263 -5.3282 21 8 -0.7758 -2.6347 -5.8811 22 7 0.4540 -1.9391 -4.1317 23 6 2.4316 -0.5703 -3.6111 24 6 1.7707 0.1061 -2.4066 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6198 -0.2503 2.1378 29 1 1.7359 -1.7675 1.2142 30 1 3.9869 -1.1067 0.4114 31 1 3.8709 0.4106 1.3349 32 1 7.2259 -0.8728 2.1478 33 1 1.5940 -2.5832 -0.3898 34 1 0.3542 -1.9385 -1.4923 35 1 1.6128 -3.7606 -2.5867 36 1 3.1413 -2.8968 -2.2904 37 1 3.2759 -2.0395 -5.4259 38 1 3.0206 -3.6192 -4.6181 39 1 -0.2562 -1.5509 -3.5970 40 1 2.2213 0.0056 -4.5124 41 1 3.5091 -0.6207 -3.4542 42 1 0.6968 0.1825 -2.5767 43 1 2.1898 1.1037 -2.2750 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172497892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:52 Heat of formation + Delta-G solvation = -102.090187 kcal Electronic energy + Delta-G solvation = -23433.318239 eV Core-core repulsion = 20091.224067 eV Total energy + Delta-G solvation = -3342.094172 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.97610 -40.26335 -38.42764 -37.03424 -35.28233 -33.85806 -32.22397 -31.83384 -30.48865 -27.88919 -26.98780 -24.59835 -24.23745 -23.30842 -22.88515 -21.37902 -20.19460 -19.02569 -18.32293 -17.86343 -17.49686 -16.96569 -16.49764 -15.96908 -15.89354 -15.42306 -15.20191 -15.12762 -14.67722 -14.54989 -14.47068 -14.12823 -13.73325 -13.65785 -13.16830 -13.08046 -12.90734 -12.71918 -12.53630 -12.34288 -12.31865 -12.00031 -11.81359 -11.72250 -11.63760 -11.40430 -11.35299 -11.12514 -10.86860 -10.44430 -10.35212 -8.97348 -8.10480 -6.19669 1.42521 1.42996 1.53407 1.58929 1.68766 2.46026 2.55444 3.00453 3.13582 3.22452 3.53872 3.60005 4.01412 4.07843 4.23227 4.28712 4.30629 4.38765 4.43154 4.46459 4.53157 4.65175 4.70697 4.78157 4.83084 4.92885 4.97548 5.05740 5.10370 5.14484 5.17545 5.25337 5.35220 5.50168 5.63785 5.73680 5.94635 6.07941 6.20970 6.32052 6.36137 6.40746 6.98713 7.00260 7.48254 9.00265 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.004024 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.854582 B = 6956.196713 C = 7478.570490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.088 3.912 3 H 0.067 0.933 4 C -0.091 4.091 5 C 0.042 3.958 6 C -0.542 4.542 7 H 0.051 0.949 8 C 0.005 3.995 9 N -0.928 5.928 10 Si 0.953 3.047 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.268 1.268 14 N -0.536 5.536 15 C 0.055 3.945 16 C -0.113 4.113 17 C 0.130 3.870 18 C 0.047 3.953 19 O -0.343 6.343 20 C 0.647 3.353 21 O -0.578 6.578 22 N -0.708 5.708 23 C -0.111 4.111 24 C 0.055 3.945 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.012 0.988 31 H -0.023 1.023 32 H 0.260 0.740 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.436 0.564 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.040 0.960 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.490 -0.672 -11.551 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.020 4.020 3 H 0.086 0.914 4 C -0.129 4.129 5 C 0.005 3.995 6 C -0.580 4.580 7 H 0.069 0.931 8 C -0.193 4.193 9 N -0.569 5.569 10 Si 0.778 3.222 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.192 1.192 14 N -0.261 5.261 15 C -0.073 4.073 16 C -0.152 4.152 17 C 0.043 3.957 18 C -0.026 4.026 19 O -0.253 6.253 20 C 0.400 3.600 21 O -0.467 6.467 22 N -0.379 5.379 23 C -0.150 4.150 24 C -0.073 4.073 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.030 0.970 31 H -0.004 1.004 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.280 0.720 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.058 0.942 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.162 -0.944 -12.127 14.649 hybrid contribution -0.480 0.061 1.313 1.400 sum -8.642 -0.883 -10.814 13.871 Atomic orbital electron populations 1.22385 0.96225 1.02272 1.02484 1.21630 0.92986 0.97367 0.89996 0.91429 1.21528 0.96948 0.99025 0.95414 1.18793 0.91646 0.93982 0.95083 1.21798 0.92186 1.34725 1.09286 0.93051 1.25825 0.97455 0.96472 0.99536 1.70096 1.02368 1.45860 1.38579 0.85637 0.77724 0.78807 0.79990 1.19876 1.21012 1.19217 1.61960 1.59300 1.02738 1.02059 1.22073 0.96174 0.90163 0.98867 1.21892 1.03442 0.98090 0.91766 1.21416 0.80420 0.98002 0.95868 1.24814 0.87412 1.03784 0.86622 1.87261 1.17619 1.74726 1.45666 1.18635 0.83741 0.76631 0.80971 1.91025 1.25010 1.63983 1.66710 1.46017 1.10725 1.61247 1.19916 1.21893 1.02053 0.92773 0.98274 1.22097 0.98512 0.97285 0.89365 0.91951 0.91716 0.92164 0.93639 0.93151 0.96992 1.00418 0.93081 0.91410 0.93940 0.89866 0.89123 0.84807 0.85302 0.71979 0.89267 0.88696 0.94162 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 8.44 71.98 0.61 -3.33 16 2 C 0.09 2.59 2.32 44.92 0.10 2.70 16 3 H 0.07 2.12 7.96 -2.39 -0.02 2.10 16 4 C -0.09 -3.47 4.54 30.59 0.14 -3.33 16 5 C 0.04 2.11 4.85 29.85 0.14 2.26 16 6 C -0.54 -30.13 9.11 25.60 0.23 -29.89 16 7 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 8 C 0.00 0.27 5.46 84.65 0.46 0.73 16 9 N -0.93 -55.24 13.29 21.45 0.28 -54.96 16 10 Si 0.95 43.57 29.54 68.60 2.03 45.59 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 14 N -0.54 -14.10 3.99 -870.68 -3.48 -17.57 16 15 C 0.05 1.27 4.42 86.36 0.38 1.65 16 16 C -0.11 -2.12 4.91 30.50 0.15 -1.97 16 17 C 0.13 2.08 0.88 3.50 0.00 2.08 16 18 C 0.05 0.65 7.51 72.19 0.54 1.19 16 19 O -0.34 -7.62 11.10 -48.04 -0.53 -8.15 16 20 C 0.65 16.32 9.16 129.89 1.19 17.51 16 21 O -0.58 -19.59 18.04 19.62 0.35 -19.23 16 22 N -0.71 -13.09 5.20 -552.78 -2.88 -15.97 16 23 C -0.11 -1.79 4.91 30.49 0.15 -1.64 16 24 C 0.06 1.11 5.04 86.36 0.44 1.54 16 25 H 0.06 1.38 8.14 -2.38 -0.02 1.37 16 26 H 0.06 1.23 6.86 -2.39 -0.02 1.22 16 27 H 0.06 1.31 6.47 -2.39 -0.02 1.29 16 28 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.05 1.88 6.28 -2.39 -0.01 1.86 16 30 H 0.01 0.63 7.72 -2.38 -0.02 0.61 16 31 H -0.02 -1.26 8.14 -2.38 -0.02 -1.28 16 32 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 33 H 0.07 1.89 6.16 -2.39 -0.01 1.88 16 34 H 0.04 0.86 5.90 -2.39 -0.01 0.84 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.13 1.22 7.71 -2.39 -0.02 1.20 16 38 H 0.13 1.33 7.71 -2.39 -0.02 1.31 16 39 H 0.44 7.36 7.81 -92.71 -0.72 6.64 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.04 0.71 6.22 -2.39 -0.01 0.70 16 43 H 0.08 1.60 8.00 -2.39 -0.02 1.58 16 Total: -1.00 -70.29 331.89 0.61 -69.69 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.28 Total: 11.10 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 4.54 Total: -10.50 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -6.07 Total: -88.50 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.18 Total: -27.38 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -70.29 0.61 -69.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.401 kcal (2) G-P(sol) polarization free energy of solvation -70.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds