Wall clock time and date at job start Tue Mar 31 2020 05:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47529 * 2 1 4 4 C 1.53003 * 109.47577 * 120.00791 * 2 1 3 5 5 C 1.52997 * 109.47344 * 184.89420 * 4 2 1 6 6 C 1.50704 * 109.46992 * 175.93100 * 5 4 2 7 7 H 1.08003 * 119.99681 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99501 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00602 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99419 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47397 * 59.99712 * 10 8 6 12 12 H 1.48507 * 109.47171 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47159 * 299.99502 * 10 8 6 14 14 N 1.46901 * 109.46817 * 240.00625 * 2 1 3 15 15 C 1.46847 * 111.00199 * 70.76893 * 14 2 1 16 16 C 1.53044 * 109.63182 * 173.81371 * 15 14 2 17 17 C 1.53220 * 109.21043 * 59.58322 * 16 15 14 18 18 C 1.52605 * 109.18097 * 303.14370 * 17 16 15 19 19 C 1.53667 * 110.21810 * 178.58622 * 18 17 16 20 20 N 1.47220 * 103.59178 * 118.81943 * 19 18 17 21 21 C 1.34079 * 108.85229 * 0.02562 * 20 19 18 22 22 O 1.21509 * 123.09151 * 180.02562 * 21 20 19 23 23 O 1.33930 * 113.82147 * 359.97438 * 21 20 19 24 24 C 1.46943 * 111.00074 * 306.62300 * 14 2 1 25 25 H 1.09007 * 109.46497 * 299.99688 * 1 2 3 26 26 H 1.09005 * 109.47436 * 59.98832 * 1 2 3 27 27 H 1.08997 * 109.47529 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46545 * 304.89707 * 4 2 1 29 29 H 1.09003 * 109.46835 * 64.89271 * 4 2 1 30 30 H 1.08997 * 109.47375 * 295.93292 * 5 4 2 31 31 H 1.09004 * 109.46952 * 55.93470 * 5 4 2 32 32 H 0.96999 * 120.00182 * 179.97438 * 9 8 6 33 33 H 1.09006 * 109.44747 * 293.86111 * 15 14 2 34 34 H 1.08999 * 109.44494 * 53.79548 * 15 14 2 35 35 H 1.09003 * 109.51286 * 179.50548 * 16 15 14 36 36 H 1.09000 * 109.51311 * 299.66101 * 16 15 14 37 37 H 1.09001 * 109.51513 * 63.05150 * 17 16 15 38 38 H 1.08994 * 109.51902 * 183.22896 * 17 16 15 39 39 H 1.08997 * 110.59614 * 237.34779 * 19 18 17 40 40 H 1.08997 * 110.59545 * 0.29694 * 19 18 17 41 41 H 0.97000 * 125.57467 * 180.02562 * 20 19 18 42 42 H 1.09003 * 109.45697 * 304.97390 * 24 14 2 43 43 H 1.08998 * 109.45508 * 64.91366 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5651 -0.6157 1.3121 6 6 4.0593 -1.2389 2.5922 7 1 3.3560 -1.6678 3.2907 8 6 5.4093 -1.2613 2.8715 9 7 6.2656 -0.7386 2.0212 10 14 6.0220 -2.0344 4.4578 11 1 5.6234 -3.4643 4.4979 12 1 7.5021 -1.9306 4.5197 13 1 5.4275 -1.3222 5.6175 14 7 2.0195 -0.6924 -1.1995 15 6 1.7692 0.1054 -2.4067 16 6 2.4252 -0.5689 -3.6139 17 6 1.8384 -1.9736 -3.7873 18 6 2.0440 -2.7654 -2.4990 19 6 1.4321 -4.1684 -2.6346 20 7 2.5855 -5.0670 -2.4625 21 6 3.6850 -4.3268 -2.2602 22 8 4.7868 -4.8090 -2.0872 23 8 3.4574 -3.0070 -2.2674 24 6 1.4235 -2.0305 -1.3154 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6068 -0.2608 2.1370 29 1 1.7501 -1.7713 1.2062 30 1 4.0011 -1.1391 0.4612 31 1 3.8580 0.4338 1.2822 32 1 7.2153 -0.7541 2.2180 33 1 0.6949 0.1832 -2.5740 34 1 2.1892 1.1027 -2.2761 35 1 2.2308 0.0202 -4.5102 36 1 3.5005 -0.6410 -3.4508 37 1 0.7725 -1.8989 -4.0027 38 1 2.3427 -2.4799 -4.6103 39 1 0.6916 -4.3409 -1.8536 40 1 0.9879 -4.2993 -3.6213 41 1 2.5550 -6.0361 -2.4908 42 1 1.6114 -2.5921 -0.4003 43 1 0.3485 -1.9370 -1.4693 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499691.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:54 Heat of formation + Delta-G solvation = -74.863835 kcal Electronic energy + Delta-G solvation = -23972.240344 eV Core-core repulsion = 20631.326795 eV Total energy + Delta-G solvation = -3340.913549 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.70194 -38.99350 -36.91132 -34.78423 -34.56333 -32.83974 -30.97981 -30.57631 -28.89272 -25.95462 -25.29303 -24.33481 -22.43865 -22.22975 -21.30167 -20.17278 -19.14451 -17.42707 -16.63066 -16.42109 -16.03601 -15.64671 -14.92868 -14.77730 -14.37772 -14.34914 -14.06665 -13.90603 -13.63698 -13.18838 -13.06094 -12.77576 -12.34591 -12.21397 -12.03348 -11.85839 -11.48170 -11.18307 -11.15369 -10.79563 -10.76018 -10.60147 -10.40414 -10.37284 -10.30463 -9.94703 -9.56549 -9.34963 -9.14198 -8.82411 -8.14555 -7.81562 -5.78436 -3.80358 2.84773 3.00834 3.44915 3.49649 3.51268 3.57709 3.89137 4.24288 4.39196 4.59887 4.61951 4.94403 5.00376 5.01992 5.19987 5.31503 5.33270 5.45726 5.48236 5.53058 5.56890 5.60928 5.64179 5.67358 5.81739 5.87110 6.08818 6.14868 6.21451 6.30437 6.42258 6.65756 6.83716 6.84732 7.31223 7.39634 7.51168 7.55439 7.91954 8.14897 8.31609 8.33235 8.64765 9.28282 9.82017 11.32405 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014373 B = 0.006309 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.588175 B = 4436.694706 C = 5567.678783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.082 3.918 3 H 0.081 0.919 4 C -0.101 4.101 5 C 0.031 3.969 6 C -0.523 4.523 7 H 0.048 0.952 8 C 0.059 3.941 9 N -0.889 5.889 10 Si 0.885 3.115 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.279 1.279 14 N -0.509 5.509 15 C 0.053 3.947 16 C -0.117 4.117 17 C -0.118 4.118 18 C 0.101 3.899 19 C 0.075 3.925 20 N -0.743 5.743 21 C 0.640 3.360 22 O -0.521 6.521 23 O -0.285 6.285 24 C 0.054 3.946 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.033 0.967 31 H 0.009 0.991 32 H 0.259 0.741 33 H 0.029 0.971 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.431 0.569 42 H 0.094 0.906 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.626 -2.806 -14.029 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.026 4.026 3 H 0.099 0.901 4 C -0.139 4.139 5 C -0.006 4.006 6 C -0.562 4.562 7 H 0.066 0.934 8 C -0.142 4.142 9 N -0.528 5.528 10 Si 0.713 3.287 11 H -0.204 1.204 12 H -0.213 1.213 13 H -0.205 1.205 14 N -0.232 5.232 15 C -0.075 4.075 16 C -0.155 4.155 17 C -0.155 4.155 18 C 0.062 3.938 19 C -0.050 4.050 20 N -0.416 5.416 21 C 0.393 3.607 22 O -0.406 6.406 23 O -0.194 6.194 24 C -0.074 4.074 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.273 0.727 42 H 0.112 0.888 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.147 -2.660 -13.875 20.713 hybrid contribution -0.664 -0.868 0.839 1.378 sum -15.811 -3.528 -13.036 20.794 Atomic orbital electron populations 1.22522 0.98833 1.01494 1.01553 1.21920 0.90985 0.98761 0.90903 0.90058 1.21725 1.01158 0.97916 0.93107 1.18975 0.87790 0.96845 0.96963 1.21260 0.91825 1.38072 1.05002 0.93354 1.24979 0.97129 0.95670 0.96435 1.69960 1.02054 1.45338 1.35481 0.86782 0.77666 0.79900 0.84329 1.20434 1.21350 1.20490 1.61987 1.58184 1.01101 1.01976 1.22124 0.97504 0.97643 0.90220 1.21579 1.02462 0.94137 0.97279 1.21823 1.01765 0.97090 0.94864 1.22826 0.79020 0.94395 0.97554 1.22807 0.90155 0.88480 1.03605 1.46012 1.07798 1.09893 1.77943 1.18798 0.84997 0.80913 0.75953 1.91074 1.23506 1.71856 1.54122 1.87541 1.26303 1.21285 1.84260 1.22323 0.95525 0.92138 0.97441 0.92087 0.93379 0.92780 0.93198 0.93753 0.94814 0.97308 0.93159 0.95308 0.90428 0.91283 0.89835 0.90043 0.90820 0.89047 0.89100 0.72698 0.88812 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.30 8.43 37.15 0.31 -1.98 16 2 C 0.08 1.33 2.31 -67.71 -0.16 1.18 16 3 H 0.08 1.38 7.97 -51.93 -0.41 0.97 16 4 C -0.10 -2.08 4.56 -26.73 -0.12 -2.20 16 5 C 0.03 0.84 4.81 -27.88 -0.13 0.71 16 6 C -0.52 -15.59 9.11 -34.44 -0.31 -15.90 16 7 H 0.05 1.39 7.74 -52.48 -0.41 0.99 16 8 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 9 N -0.89 -28.52 13.29 55.43 0.74 -27.79 16 10 Si 0.89 23.00 29.54 -169.99 -5.02 17.98 16 11 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 13 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 14 N -0.51 -7.98 4.10 -226.94 -0.93 -8.91 16 15 C 0.05 0.66 5.12 -3.83 -0.02 0.64 16 16 C -0.12 -1.33 6.00 -26.59 -0.16 -1.49 16 17 C -0.12 -1.14 4.85 -26.82 -0.13 -1.27 16 18 C 0.10 1.24 0.96 -90.72 -0.09 1.15 16 19 C 0.08 0.66 7.34 -3.30 -0.02 0.64 16 20 N -0.74 -8.72 6.41 -64.81 -0.42 -9.13 16 21 C 0.64 11.49 9.16 53.74 0.49 11.98 16 22 O -0.52 -11.79 18.04 -19.10 -0.34 -12.14 16 23 O -0.28 -5.18 10.17 -38.23 -0.39 -5.57 16 24 C 0.05 0.72 3.37 -4.05 -0.01 0.71 16 25 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 26 H 0.05 0.52 6.85 -51.93 -0.36 0.17 16 27 H 0.05 0.63 6.43 -51.93 -0.33 0.30 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.04 0.90 6.27 -51.93 -0.33 0.57 16 30 H 0.03 1.01 7.86 -51.93 -0.41 0.60 16 31 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 33 H 0.03 0.30 6.91 -51.93 -0.36 -0.06 16 34 H 0.08 0.99 8.00 -51.93 -0.42 0.58 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.08 1.21 7.98 -51.93 -0.41 0.80 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.65 7.71 -51.93 -0.40 0.25 16 40 H 0.09 0.52 7.71 -51.93 -0.40 0.12 16 41 H 0.43 3.91 8.96 -40.82 -0.37 3.54 16 42 H 0.09 1.49 6.19 -51.93 -0.32 1.17 16 43 H 0.05 0.56 6.52 -51.93 -0.34 0.22 16 LS Contribution 334.62 15.07 5.04 5.04 Total: -1.00 -37.26 334.62 -8.70 -45.97 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.93 Total: -1.32 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -0.45 Total: -4.13 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: -0.61 Total: -45.83 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.73 Total: -17.71 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -37.26 -8.70 -45.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499691.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.897 kcal (2) G-P(sol) polarization free energy of solvation -37.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds