Wall clock time and date at job start Tue Mar 31 2020 05:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46802 * 2 1 4 4 C 1.52997 * 109.47238 * 240.00294 * 2 1 3 5 5 C 1.52996 * 109.47259 * 62.75642 * 4 2 1 6 6 C 1.50697 * 109.47226 * 174.58554 * 5 4 2 7 7 H 1.08000 * 120.00325 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00143 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00007 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99870 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47258 * 90.00183 * 10 8 6 12 12 H 1.48510 * 109.47084 * 209.99648 * 10 8 6 13 13 H 1.48497 * 109.47503 * 329.99420 * 10 8 6 14 14 N 1.46902 * 109.47211 * 120.00015 * 2 1 3 15 15 C 1.46850 * 110.99993 * 174.46303 * 14 2 1 16 16 C 1.53047 * 109.62001 * 186.20168 * 15 14 2 17 17 C 1.53215 * 109.20405 * 300.40001 * 16 15 14 18 18 C 1.52605 * 109.18952 * 56.86770 * 17 16 15 19 19 C 1.53659 * 110.22059 * 181.42919 * 18 17 16 20 20 N 1.47222 * 103.59357 * 241.17561 * 19 18 17 21 21 C 1.34070 * 108.85204 * 359.97438 * 20 19 18 22 22 O 1.21509 * 123.09375 * 180.02562 * 21 20 19 23 23 O 1.33933 * 113.81884 * 0.02562 * 21 20 19 24 24 C 1.46945 * 110.99678 * 298.60906 * 14 2 1 25 25 H 1.09000 * 109.47447 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47555 * 299.99792 * 1 2 3 27 27 H 1.09004 * 109.47138 * 59.99982 * 1 2 3 28 28 H 1.08998 * 109.47196 * 302.75256 * 4 2 1 29 29 H 1.09004 * 109.47372 * 182.75666 * 4 2 1 30 30 H 1.08999 * 109.47410 * 294.58562 * 5 4 2 31 31 H 1.08996 * 109.47382 * 54.58619 * 5 4 2 32 32 H 0.96996 * 119.99857 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.44217 * 306.24167 * 15 14 2 34 34 H 1.08995 * 109.44945 * 66.15291 * 15 14 2 35 35 H 1.08998 * 109.51663 * 180.48412 * 16 15 14 36 36 H 1.08997 * 109.55986 * 60.34415 * 16 15 14 37 37 H 1.09002 * 109.51968 * 296.95607 * 17 16 15 38 38 H 1.09000 * 109.52146 * 176.77908 * 17 16 15 39 39 H 1.09003 * 110.59975 * 359.70287 * 19 18 17 40 40 H 1.09004 * 110.60017 * 122.64832 * 19 18 17 41 41 H 0.97005 * 125.57216 * 179.97438 * 20 19 18 42 42 H 1.08999 * 109.45089 * 295.08297 * 24 14 2 43 43 H 1.08993 * 109.45507 * 55.02520 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5874 0.0390 -2.4975 6 6 2.1993 -0.5940 -3.7206 7 1 2.8465 -1.4524 -3.6179 8 6 1.9336 -0.0766 -4.9707 9 7 1.1458 0.9690 -5.0958 10 14 2.6926 -0.8610 -6.4867 11 1 1.7860 -1.9171 -7.0041 12 1 2.8933 0.1747 -7.5319 13 1 4.0019 -1.4637 -6.1293 14 7 2.0196 -0.6925 1.1994 15 6 3.4816 -0.8277 1.1691 16 6 3.9431 -1.6848 2.3501 17 6 3.5094 -1.0155 3.6583 18 6 1.9963 -0.8177 3.6429 19 6 1.5395 -0.1148 4.9308 20 7 0.6318 -1.0917 5.5548 21 6 0.5632 -2.1795 4.7741 22 8 -0.1165 -3.1494 5.0459 23 8 1.3128 -2.0990 3.6671 24 6 1.5758 -0.0072 2.4212 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6369 -1.7336 -1.2743 29 1 3.1289 -0.7642 -1.2249 30 1 0.5008 -0.0005 -2.5730 31 1 1.9091 1.0780 -2.4267 32 1 0.9586 1.3327 -5.9753 33 1 3.7826 -1.3036 0.2358 34 1 3.9388 0.1594 1.2365 35 1 5.0290 -1.7769 2.3308 36 1 3.4923 -2.6748 2.2806 37 1 4.0022 -0.0479 3.7533 38 1 3.7851 -1.6499 4.5008 39 1 2.3912 0.0868 5.5804 40 1 1.0078 0.8075 4.6964 41 1 0.1605 -0.9684 6.3936 42 1 2.0306 0.9823 2.4679 43 1 0.4906 0.0926 2.4076 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:57 Heat of formation + Delta-G solvation = -78.431735 kcal Electronic energy + Delta-G solvation = -23186.583456 eV Core-core repulsion = 19845.515191 eV Total energy + Delta-G solvation = -3341.068265 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.99654 -39.03412 -37.18872 -35.01719 -34.87190 -33.03775 -31.29035 -30.99450 -28.53184 -26.39788 -25.19408 -24.29438 -22.70613 -22.34979 -21.53243 -20.40082 -19.16462 -17.67789 -16.84224 -16.78746 -16.39640 -15.77556 -15.11873 -14.94318 -14.63963 -14.32397 -14.24031 -13.94830 -13.80039 -13.71566 -13.20490 -12.76221 -12.50176 -12.32518 -12.04746 -11.85708 -11.43050 -11.24237 -11.17911 -10.96487 -10.89243 -10.77647 -10.65836 -10.53901 -10.30057 -10.07169 -9.66097 -9.57513 -9.29743 -9.00752 -8.32321 -8.08838 -5.98853 -4.00534 2.53780 2.62376 3.28458 3.33217 3.39381 3.42628 3.65994 4.04912 4.18961 4.39645 4.47916 4.80449 4.81035 4.86039 5.04075 5.19551 5.30221 5.37135 5.39136 5.42617 5.45257 5.52485 5.62207 5.72647 5.84398 5.92011 6.08768 6.25321 6.29568 6.39401 6.52406 6.64068 6.72167 6.76773 7.10347 7.16341 7.33049 7.39469 7.69638 7.85143 7.94706 8.01576 8.45262 9.06613 9.63420 11.12512 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031239 B = 0.003490 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.110821 B = 8021.098927 C = 8241.026825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.084 3.916 3 H 0.036 0.964 4 C -0.105 4.105 5 C 0.023 3.977 6 C -0.518 4.518 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.526 5.526 15 C 0.046 3.954 16 C -0.116 4.116 17 C -0.120 4.120 18 C 0.103 3.897 19 C 0.073 3.927 20 N -0.741 5.741 21 C 0.640 3.360 22 O -0.528 6.528 23 O -0.293 6.293 24 C 0.052 3.948 25 H 0.061 0.939 26 H 0.039 0.961 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.020 0.980 31 H 0.012 0.988 32 H 0.260 0.740 33 H 0.093 0.907 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.433 0.567 42 H 0.054 0.946 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.969 1.909 22.164 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 H 0.054 0.946 4 C -0.142 4.142 5 C -0.014 4.014 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.251 5.251 15 C -0.081 4.081 16 C -0.153 4.153 17 C -0.157 4.157 18 C 0.064 3.936 19 C -0.052 4.052 20 N -0.414 5.414 21 C 0.393 3.607 22 O -0.414 6.414 23 O -0.202 6.202 24 C -0.076 4.076 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.275 0.725 42 H 0.072 0.928 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.472 0.851 21.789 22.081 hybrid contribution 0.505 0.750 -0.423 0.999 sum 3.977 1.601 21.366 21.792 Atomic orbital electron populations 1.21896 0.94599 1.02418 1.01086 1.21799 0.95641 0.95380 0.89513 0.94571 1.21791 0.99467 0.99693 0.93289 1.19123 0.96830 0.95027 0.90460 1.21262 1.28935 1.14041 0.91448 0.92736 1.25012 0.95312 0.95029 0.99082 1.69961 1.36951 1.23230 1.23456 0.86617 0.79689 0.79002 0.82828 1.20656 1.21299 1.19900 1.61990 1.10797 1.51223 1.01054 1.22242 0.87570 0.98514 0.99797 1.21587 1.00493 1.00553 0.92708 1.21856 0.91386 1.02393 1.00099 1.22870 0.94120 0.81423 0.95150 1.22873 0.94928 0.93538 0.93875 1.46026 1.50883 1.17740 1.26732 1.18800 0.79385 0.83311 0.79187 1.91063 1.42961 1.33654 1.73679 1.87467 1.57027 1.36719 1.39005 1.22317 1.02024 0.94206 0.89091 0.92011 0.94157 0.90976 0.92468 0.93060 0.96169 0.96942 0.93068 0.88905 0.95029 0.90993 0.90209 0.89721 0.90787 0.88761 0.88775 0.72521 0.92768 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.72 37.16 0.32 -2.00 16 2 C 0.08 1.40 2.17 -67.72 -0.15 1.25 16 3 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.10 -2.13 4.34 -26.73 -0.12 -2.24 16 5 C 0.02 0.58 4.53 -27.89 -0.13 0.46 16 6 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 7 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 10 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 N -0.53 -7.50 4.51 -226.93 -1.02 -8.52 16 15 C 0.05 0.59 5.10 -3.83 -0.02 0.57 16 16 C -0.12 -1.20 6.00 -26.60 -0.16 -1.36 16 17 C -0.12 -0.99 4.85 -26.82 -0.13 -1.12 16 18 C 0.10 0.99 0.96 -90.72 -0.09 0.91 16 19 C 0.07 0.46 7.34 -3.31 -0.02 0.43 16 20 N -0.74 -6.18 6.41 -64.81 -0.42 -6.60 16 21 C 0.64 8.68 9.16 53.74 0.49 9.17 16 22 O -0.53 -9.33 18.04 -19.11 -0.34 -9.67 16 23 O -0.29 -4.06 10.18 -38.24 -0.39 -4.45 16 24 C 0.05 0.58 4.05 -4.04 -0.02 0.56 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.04 0.55 6.33 -51.93 -0.33 0.22 16 27 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 1.02 6.04 -51.93 -0.31 0.70 16 30 H 0.02 0.54 6.78 -51.93 -0.35 0.18 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.09 1.34 5.80 -51.93 -0.30 1.03 16 34 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.99 7.98 -51.93 -0.41 0.58 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.36 7.71 -51.93 -0.40 -0.04 16 40 H 0.09 0.43 7.71 -51.93 -0.40 0.03 16 41 H 0.43 2.54 8.96 -40.82 -0.37 2.17 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 1.03 6.09 -51.93 -0.32 0.71 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -34.06 334.41 -8.72 -42.78 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.88 Total: -2.38 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -0.42 Total: -6.79 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: -0.70 Total: -41.19 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.73 Total: -14.12 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.06 -8.72 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.655 kcal (2) G-P(sol) polarization free energy of solvation -34.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds