Wall clock time and date at job start Tue Mar 31 2020 05:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46802 * 2 1 4 4 C 1.52997 * 109.47238 * 240.00294 * 2 1 3 5 5 C 1.52996 * 109.47259 * 62.75642 * 4 2 1 6 6 C 1.50697 * 109.47226 * 174.58554 * 5 4 2 7 7 H 1.08000 * 120.00325 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00143 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00007 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99870 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47258 * 90.00183 * 10 8 6 12 12 H 1.48510 * 109.47084 * 209.99648 * 10 8 6 13 13 H 1.48497 * 109.47503 * 329.99420 * 10 8 6 14 14 N 1.46902 * 109.47211 * 120.00015 * 2 1 3 15 15 C 1.46850 * 110.99993 * 174.46303 * 14 2 1 16 16 C 1.53047 * 109.62001 * 186.20168 * 15 14 2 17 17 C 1.53215 * 109.20405 * 300.40001 * 16 15 14 18 18 C 1.52605 * 109.18952 * 56.86770 * 17 16 15 19 19 C 1.53659 * 110.22059 * 181.42919 * 18 17 16 20 20 N 1.47222 * 103.59357 * 241.17561 * 19 18 17 21 21 C 1.34070 * 108.85204 * 359.97438 * 20 19 18 22 22 O 1.21509 * 123.09375 * 180.02562 * 21 20 19 23 23 O 1.33933 * 113.81884 * 0.02562 * 21 20 19 24 24 C 1.46945 * 110.99678 * 298.60906 * 14 2 1 25 25 H 1.09000 * 109.47447 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47555 * 299.99792 * 1 2 3 27 27 H 1.09004 * 109.47138 * 59.99982 * 1 2 3 28 28 H 1.08998 * 109.47196 * 302.75256 * 4 2 1 29 29 H 1.09004 * 109.47372 * 182.75666 * 4 2 1 30 30 H 1.08999 * 109.47410 * 294.58562 * 5 4 2 31 31 H 1.08996 * 109.47382 * 54.58619 * 5 4 2 32 32 H 0.96996 * 119.99857 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.44217 * 306.24167 * 15 14 2 34 34 H 1.08995 * 109.44945 * 66.15291 * 15 14 2 35 35 H 1.08998 * 109.51663 * 180.48412 * 16 15 14 36 36 H 1.08997 * 109.55986 * 60.34415 * 16 15 14 37 37 H 1.09002 * 109.51968 * 296.95607 * 17 16 15 38 38 H 1.09000 * 109.52146 * 176.77908 * 17 16 15 39 39 H 1.09003 * 110.59975 * 359.70287 * 19 18 17 40 40 H 1.09004 * 110.60017 * 122.64832 * 19 18 17 41 41 H 0.97005 * 125.57216 * 179.97438 * 20 19 18 42 42 H 1.08999 * 109.45089 * 295.08297 * 24 14 2 43 43 H 1.08993 * 109.45507 * 55.02520 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5874 0.0390 -2.4975 6 6 2.1993 -0.5940 -3.7206 7 1 2.8465 -1.4524 -3.6179 8 6 1.9336 -0.0766 -4.9707 9 7 1.1458 0.9690 -5.0958 10 14 2.6926 -0.8610 -6.4867 11 1 1.7860 -1.9171 -7.0041 12 1 2.8933 0.1747 -7.5319 13 1 4.0019 -1.4637 -6.1293 14 7 2.0196 -0.6925 1.1994 15 6 3.4816 -0.8277 1.1691 16 6 3.9431 -1.6848 2.3501 17 6 3.5094 -1.0155 3.6583 18 6 1.9963 -0.8177 3.6429 19 6 1.5395 -0.1148 4.9308 20 7 0.6318 -1.0917 5.5548 21 6 0.5632 -2.1795 4.7741 22 8 -0.1165 -3.1494 5.0459 23 8 1.3128 -2.0990 3.6671 24 6 1.5758 -0.0072 2.4212 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6369 -1.7336 -1.2743 29 1 3.1289 -0.7642 -1.2249 30 1 0.5008 -0.0005 -2.5730 31 1 1.9091 1.0780 -2.4267 32 1 0.9586 1.3327 -5.9753 33 1 3.7826 -1.3036 0.2358 34 1 3.9388 0.1594 1.2365 35 1 5.0290 -1.7769 2.3308 36 1 3.4923 -2.6748 2.2806 37 1 4.0022 -0.0479 3.7533 38 1 3.7851 -1.6499 4.5008 39 1 2.3912 0.0868 5.5804 40 1 1.0078 0.8075 4.6964 41 1 0.1605 -0.9684 6.3936 42 1 2.0306 0.9823 2.4679 43 1 0.4906 0.0926 2.4076 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172499694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:56 Heat of formation + Delta-G solvation = -104.449511 kcal Electronic energy + Delta-G solvation = -23187.711671 eV Core-core repulsion = 19845.515191 eV Total energy + Delta-G solvation = -3342.196480 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.83861 -40.10600 -38.33414 -36.35314 -35.67190 -34.84420 -32.67160 -32.00068 -30.06298 -27.60009 -26.36409 -25.59462 -23.60187 -23.34549 -23.08054 -21.33887 -20.59490 -18.64916 -18.46198 -17.69697 -17.53184 -17.05572 -16.41987 -16.05524 -16.00907 -15.58786 -15.10688 -15.00002 -14.93780 -14.52641 -14.25661 -14.10092 -13.90199 -13.53986 -13.45982 -13.10828 -12.89927 -12.80754 -12.48146 -12.43795 -12.38912 -11.96966 -11.85573 -11.77909 -11.62275 -11.35170 -11.31253 -11.09609 -10.90240 -10.51729 -10.31954 -9.16489 -8.19249 -6.29369 1.39704 1.40960 1.51784 1.64804 1.78768 2.41066 2.58390 2.81420 3.13962 3.26465 3.48696 3.60474 3.98423 4.03199 4.14619 4.20114 4.32800 4.46100 4.47151 4.50664 4.56673 4.65165 4.71102 4.76717 4.80287 4.89829 4.96246 4.97987 5.05298 5.08146 5.16870 5.28099 5.38045 5.43747 5.53315 5.79664 5.84827 5.87686 6.14222 6.22185 6.30623 6.36895 6.87480 7.08566 7.39414 8.92357 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031239 B = 0.003490 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.110821 B = 8021.098927 C = 8241.026825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.095 3.905 3 H 0.038 0.962 4 C -0.091 4.091 5 C 0.030 3.970 6 C -0.543 4.543 7 H 0.055 0.945 8 C 0.002 3.998 9 N -0.931 5.931 10 Si 0.961 3.039 11 H -0.275 1.275 12 H -0.280 1.280 13 H -0.264 1.264 14 N -0.543 5.543 15 C 0.045 3.955 16 C -0.112 4.112 17 C -0.115 4.115 18 C 0.094 3.906 19 C 0.079 3.921 20 N -0.719 5.719 21 C 0.634 3.366 22 O -0.585 6.585 23 O -0.324 6.324 24 C 0.049 3.951 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.055 0.945 30 H -0.003 1.003 31 H -0.008 1.008 32 H 0.263 0.737 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.133 0.867 40 H 0.120 0.880 41 H 0.445 0.555 42 H 0.084 0.916 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.607 3.141 23.981 24.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.013 4.013 3 H 0.056 0.944 4 C -0.129 4.129 5 C -0.007 4.007 6 C -0.581 4.581 7 H 0.073 0.927 8 C -0.196 4.196 9 N -0.572 5.572 10 Si 0.786 3.214 11 H -0.200 1.200 12 H -0.206 1.206 13 H -0.188 1.188 14 N -0.268 5.268 15 C -0.082 4.082 16 C -0.150 4.150 17 C -0.152 4.152 18 C 0.057 3.943 19 C -0.045 4.045 20 N -0.392 5.392 21 C 0.387 3.613 22 O -0.475 6.475 23 O -0.233 6.233 24 C -0.079 4.079 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.015 0.985 31 H 0.010 0.990 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.137 0.863 38 H 0.104 0.896 39 H 0.151 0.849 40 H 0.138 0.862 41 H 0.290 0.710 42 H 0.101 0.899 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.132 2.121 23.640 24.283 hybrid contribution 0.014 0.412 -1.002 1.083 sum 5.146 2.533 22.638 23.353 Atomic orbital electron populations 1.21810 0.94580 1.01588 1.01430 1.21489 0.95570 0.94937 0.89300 0.94402 1.21545 0.99601 0.98445 0.93278 1.18980 0.95143 0.94319 0.92260 1.21707 1.29225 1.14312 0.92892 0.92666 1.25921 0.95692 0.95498 1.02480 1.70083 1.38110 1.24551 1.24428 0.85509 0.79118 0.78173 0.78629 1.20047 1.20550 1.18802 1.61884 1.11914 1.51752 1.01241 1.22257 0.86733 0.99465 0.99784 1.21536 1.01467 0.98769 0.93195 1.21920 0.90351 1.04140 0.98794 1.23189 0.94843 0.80136 0.96172 1.23152 0.96023 0.92947 0.92362 1.45944 1.50402 1.16498 1.26359 1.18997 0.78999 0.83766 0.79517 1.91007 1.45361 1.36101 1.75015 1.87438 1.57403 1.39099 1.39401 1.22457 1.01860 0.95566 0.88038 0.93403 0.91119 0.93263 0.93973 0.92658 0.98499 0.98952 0.92800 0.91528 0.93525 0.89000 0.93111 0.86277 0.89644 0.84875 0.86159 0.71004 0.89864 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 8.72 71.98 0.63 -3.90 16 2 C 0.09 3.17 2.17 44.91 0.10 3.27 16 3 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 4 C -0.09 -3.82 4.34 30.59 0.13 -3.69 16 5 C 0.03 1.61 4.53 29.85 0.14 1.74 16 6 C -0.54 -31.39 9.11 25.60 0.23 -31.16 16 7 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 8 C 0.00 0.11 5.46 84.66 0.46 0.57 16 9 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 10 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 13 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 14 N -0.54 -14.98 4.51 -871.88 -3.93 -18.91 16 15 C 0.05 1.09 5.10 86.33 0.44 1.53 16 16 C -0.11 -2.12 6.00 30.68 0.18 -1.94 16 17 C -0.11 -1.44 4.85 30.54 0.15 -1.29 16 18 C 0.09 1.52 0.96 -10.86 -0.01 1.51 16 19 C 0.08 0.60 7.34 86.46 0.63 1.24 16 20 N -0.72 -9.93 6.41 -590.50 -3.78 -13.71 16 21 C 0.63 16.70 9.16 129.90 1.19 17.89 16 22 O -0.59 -21.16 18.04 19.64 0.35 -20.80 16 23 O -0.32 -8.72 10.18 -48.82 -0.50 -9.21 16 24 C 0.05 0.94 4.05 86.14 0.35 1.29 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.07 1.87 6.33 -2.38 -0.02 1.86 16 27 H 0.05 1.83 6.62 -2.39 -0.02 1.82 16 28 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.05 2.25 6.04 -2.39 -0.01 2.24 16 30 H 0.00 -0.19 6.78 -2.39 -0.02 -0.20 16 31 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.07 1.93 5.80 -2.39 -0.01 1.92 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.26 7.98 -2.39 -0.02 1.24 16 37 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.13 0.13 7.71 -2.39 -0.02 0.11 16 40 H 0.12 0.41 7.71 -2.38 -0.02 0.39 16 41 H 0.45 3.93 8.96 -92.70 -0.83 3.10 16 42 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.08 1.69 6.09 -2.39 -0.01 1.68 16 Total: -1.00 -78.42 334.41 -0.75 -79.17 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 0.18 Total: 6.14 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 4.62 Total: -12.94 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -7.43 Total: -89.14 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.14 Total: -30.02 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -78.42 -0.75 -79.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.283 kcal (2) G-P(sol) polarization free energy of solvation -78.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds