Wall clock time and date at job start Tue Mar 31 2020 05:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47503 * 2 1 4 4 C 1.52997 * 109.47108 * 120.00226 * 2 1 3 5 5 C 1.53005 * 109.47124 * 185.00034 * 4 2 1 6 6 C 1.50698 * 109.47039 * 179.97438 * 5 4 2 7 7 H 1.07996 * 120.00306 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00016 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00042 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00286 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47033 * 59.99988 * 10 8 6 12 12 H 1.48495 * 109.47245 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47254 * 300.00220 * 10 8 6 14 14 N 1.46906 * 109.47029 * 239.99825 * 2 1 3 15 15 C 1.46844 * 110.99887 * 306.04766 * 14 2 1 16 16 C 1.53045 * 109.62159 * 186.19226 * 15 14 2 17 17 C 1.53212 * 109.21262 * 300.40934 * 16 15 14 18 18 C 1.52613 * 109.19015 * 56.85571 * 17 16 15 19 19 C 1.53655 * 110.21959 * 181.43638 * 18 17 16 20 20 N 1.47217 * 103.59422 * 241.17513 * 19 18 17 21 21 C 1.34080 * 108.84953 * 0.02562 * 20 19 18 22 22 O 1.21510 * 123.08809 * 179.97438 * 21 20 19 23 23 O 1.33924 * 113.81871 * 0.02562 * 21 20 19 24 24 C 1.46943 * 110.99653 * 70.19318 * 14 2 1 25 25 H 1.08999 * 109.46789 * 60.00096 * 1 2 3 26 26 H 1.08998 * 109.47056 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46786 * 300.00439 * 1 2 3 28 28 H 1.09001 * 109.46957 * 304.99351 * 4 2 1 29 29 H 1.08994 * 109.47537 * 64.99997 * 4 2 1 30 30 H 1.09002 * 109.46961 * 299.99951 * 5 4 2 31 31 H 1.09003 * 109.47109 * 59.99434 * 5 4 2 32 32 H 0.96999 * 120.00138 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.44778 * 306.23539 * 15 14 2 34 34 H 1.08998 * 109.44964 * 66.14966 * 15 14 2 35 35 H 1.08996 * 109.51320 * 60.33006 * 16 15 14 36 36 H 1.08998 * 109.51273 * 180.43594 * 16 15 14 37 37 H 1.09001 * 109.52136 * 176.77100 * 17 16 15 38 38 H 1.08996 * 109.51823 * 296.89075 * 17 16 15 39 39 H 1.09006 * 110.60199 * 359.69757 * 19 18 17 40 40 H 1.08995 * 110.60142 * 122.48922 * 19 18 17 41 41 H 0.97004 * 125.57653 * 179.97438 * 20 19 18 42 42 H 1.08995 * 109.45568 * 295.08787 * 24 14 2 43 43 H 1.09006 * 109.45364 * 55.03203 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0671 -1.3232 2.5444 7 1 3.3686 -1.8030 3.2139 8 6 5.4184 -1.3602 2.8157 9 7 6.2691 -0.7763 2.0002 10 14 6.0410 -2.2395 4.3417 11 1 5.6475 -3.6703 4.2837 12 1 7.5211 -2.1359 4.4035 13 1 5.4494 -1.6121 5.5506 14 7 2.0197 -0.6926 -1.1995 15 6 1.4345 -2.0350 -1.3077 16 6 2.0791 -2.7839 -2.4764 17 6 1.8343 -2.0034 -3.7719 18 6 2.3847 -0.5885 -3.6167 19 6 2.1195 0.2274 -4.8915 20 7 3.4685 0.5815 -5.3626 21 6 4.3721 0.0659 -4.5167 22 8 5.5706 0.2029 -4.6619 23 8 3.8320 -0.6148 -3.4975 24 6 1.7569 0.0995 -2.4089 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6054 -0.2617 2.1369 29 1 1.7517 -1.7715 1.2056 30 1 3.9995 -1.0728 0.4259 31 1 3.8532 0.4370 1.3572 32 1 7.2198 -0.8020 2.1913 33 1 1.6120 -2.5839 -0.3829 34 1 0.3613 -1.9504 -1.4788 35 1 3.1514 -2.8751 -2.3034 36 1 1.6380 -3.7772 -2.5600 37 1 2.3399 -2.5022 -4.5987 38 1 0.7641 -1.9585 -3.9733 39 1 1.6010 -0.3792 -5.6341 40 1 1.5438 1.1236 -4.6604 41 1 3.6708 1.1021 -6.1557 42 1 0.6809 0.1863 -2.5594 43 1 2.1884 1.0938 -2.2926 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:59 Heat of formation + Delta-G solvation = -75.217289 kcal Electronic energy + Delta-G solvation = -23686.688533 eV Core-core repulsion = 20345.759657 eV Total energy + Delta-G solvation = -3340.928876 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.80271 -39.03803 -37.05625 -34.74986 -34.62462 -32.87924 -31.09955 -30.58320 -28.89000 -25.99365 -25.31368 -24.12374 -22.65629 -22.41665 -21.31687 -20.38058 -18.83468 -17.48010 -16.64588 -16.53207 -16.03826 -15.92687 -14.98734 -14.75568 -14.46735 -14.35950 -14.12582 -13.98578 -13.59675 -13.29251 -12.99947 -12.74262 -12.47228 -12.26725 -11.95262 -11.86500 -11.48883 -11.29873 -11.08589 -10.83870 -10.75866 -10.67559 -10.49187 -10.41021 -10.17841 -10.03592 -9.55647 -9.46936 -9.14789 -8.84039 -8.16797 -7.81427 -5.80102 -3.82717 2.73520 2.85471 3.42933 3.47278 3.47822 3.49455 3.81431 4.20157 4.34322 4.53698 4.59746 4.93026 4.94839 5.01155 5.16283 5.27679 5.35339 5.41314 5.47859 5.52747 5.54280 5.57407 5.62304 5.67992 5.83625 5.87589 6.07318 6.22782 6.26088 6.34641 6.50110 6.65788 6.71593 6.86751 7.29492 7.36980 7.48183 7.50725 7.90894 8.13347 8.17438 8.31230 8.62969 9.26459 9.79705 11.30440 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016920 B = 0.005146 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.482241 B = 5439.943262 C = 6372.863661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.082 3.918 3 H 0.078 0.922 4 C -0.101 4.101 5 C 0.029 3.971 6 C -0.522 4.522 7 H 0.049 0.951 8 C 0.058 3.942 9 N -0.890 5.890 10 Si 0.886 3.114 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.279 1.279 14 N -0.509 5.509 15 C 0.051 3.949 16 C -0.118 4.118 17 C -0.118 4.118 18 C 0.102 3.898 19 C 0.075 3.925 20 N -0.743 5.743 21 C 0.639 3.361 22 O -0.524 6.524 23 O -0.286 6.286 24 C 0.056 3.944 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.034 0.966 31 H 0.008 0.992 32 H 0.259 0.741 33 H 0.089 0.911 34 H 0.030 0.970 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.431 0.569 42 H 0.053 0.947 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.127 1.101 -15.855 22.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.026 4.026 3 H 0.096 0.904 4 C -0.139 4.139 5 C -0.008 4.008 6 C -0.561 4.561 7 H 0.067 0.933 8 C -0.143 4.143 9 N -0.529 5.529 10 Si 0.714 3.286 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.205 1.205 14 N -0.232 5.232 15 C -0.077 4.077 16 C -0.156 4.156 17 C -0.156 4.156 18 C 0.063 3.937 19 C -0.051 4.051 20 N -0.416 5.416 21 C 0.392 3.608 22 O -0.408 6.408 23 O -0.195 6.195 24 C -0.072 4.072 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.026 0.974 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.048 0.952 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.273 0.727 42 H 0.071 0.929 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.705 0.915 -15.528 21.405 hybrid contribution -0.510 -0.004 0.323 0.603 sum -15.214 0.910 -15.205 21.529 Atomic orbital electron populations 1.22520 0.98791 1.01744 1.01313 1.21899 0.90995 0.98656 0.91019 0.90416 1.21722 1.01013 0.98236 0.92916 1.18998 0.87889 0.96713 0.97161 1.21263 0.91807 1.34491 1.08494 0.93269 1.25001 0.97168 0.95766 0.96381 1.69980 1.02245 1.43994 1.36693 0.86772 0.77653 0.80260 0.83917 1.20426 1.21408 1.20486 1.62008 1.58699 1.01811 1.00673 1.22185 0.95187 0.90488 0.99819 1.21591 1.03581 0.97653 0.92736 1.21833 1.00801 0.92923 1.00001 1.22830 0.78885 0.97240 0.94723 1.22821 0.85836 1.00533 0.95886 1.46031 1.06230 1.59104 1.30259 1.18836 0.86012 0.77205 0.78738 1.91073 1.11906 1.62860 1.74987 1.87554 1.20672 1.67671 1.43564 1.22249 0.97706 0.97627 0.89658 0.93649 0.92455 0.92151 0.93281 0.93279 0.94741 0.97393 0.93121 0.89272 0.95203 0.89715 0.91202 0.90835 0.90027 0.88997 0.89028 0.72671 0.92936 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 8.44 37.16 0.31 -1.98 16 2 C 0.08 1.33 2.31 -67.71 -0.16 1.17 16 3 H 0.08 1.33 8.00 -51.93 -0.42 0.91 16 4 C -0.10 -2.05 4.55 -26.73 -0.12 -2.17 16 5 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 6 C -0.52 -15.26 9.11 -34.44 -0.31 -15.58 16 7 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -28.26 13.29 55.43 0.74 -27.52 16 10 Si 0.89 22.50 29.54 -169.99 -5.02 17.48 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 N -0.51 -7.97 4.04 -226.94 -0.92 -8.89 16 15 C 0.05 0.69 4.52 -3.83 -0.02 0.68 16 16 C -0.12 -1.46 6.00 -26.60 -0.16 -1.62 16 17 C -0.12 -1.15 4.84 -26.82 -0.13 -1.28 16 18 C 0.10 1.16 0.96 -90.73 -0.09 1.08 16 19 C 0.07 0.57 7.34 -3.31 -0.02 0.54 16 20 N -0.74 -7.59 6.41 -64.81 -0.42 -8.00 16 21 C 0.64 10.41 9.16 53.74 0.49 10.91 16 22 O -0.52 -10.89 18.04 -19.11 -0.34 -11.23 16 23 O -0.29 -4.86 10.17 -38.22 -0.39 -5.24 16 24 C 0.06 0.69 3.97 -4.05 -0.02 0.67 16 25 H 0.04 0.48 6.80 -51.93 -0.35 0.13 16 26 H 0.06 0.69 6.47 -51.93 -0.34 0.35 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.98 6.22 -51.93 -0.32 0.65 16 30 H 0.03 1.00 7.75 -51.93 -0.40 0.60 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 33 H 0.09 1.40 6.12 -51.93 -0.32 1.08 16 34 H 0.03 0.34 6.60 -51.93 -0.34 0.00 16 35 H 0.08 1.35 7.98 -51.93 -0.41 0.93 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.45 7.71 -51.93 -0.40 0.05 16 40 H 0.09 0.51 7.71 -51.93 -0.40 0.11 16 41 H 0.43 3.26 8.96 -40.82 -0.37 2.89 16 42 H 0.05 0.49 6.84 -51.93 -0.36 0.14 16 43 H 0.08 1.08 8.03 -51.93 -0.42 0.66 16 LS Contribution 334.42 15.07 5.04 5.04 Total: -1.00 -36.57 334.42 -8.68 -45.25 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.92 Total: -1.59 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -0.45 Total: -5.29 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: -0.60 Total: -44.41 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.73 Total: -16.47 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.57 -8.68 -45.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.963 kcal (2) G-P(sol) polarization free energy of solvation -36.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds