Wall clock time and date at job start Tue Mar 31 2020 05:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47101 * 2 1 4 4 C 1.52998 * 109.47445 * 239.99361 * 2 1 3 5 5 C 1.52995 * 109.47309 * 175.00252 * 4 2 1 6 6 C 1.50700 * 109.47310 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99713 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99919 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00088 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99646 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47079 * 90.00057 * 10 8 6 12 12 H 1.48498 * 109.47033 * 209.99881 * 10 8 6 13 13 H 1.48493 * 109.47551 * 330.00040 * 10 8 6 14 14 N 1.46901 * 109.46702 * 119.99646 * 2 1 3 15 15 C 1.46860 * 111.00183 * 295.00114 * 14 2 1 16 16 C 1.53136 * 109.45633 * 186.32969 * 15 14 2 17 17 C 1.52590 * 109.30777 * 301.66741 * 16 15 14 18 18 C 1.53638 * 110.26069 * 178.49743 * 17 16 15 19 19 N 1.47226 * 103.58376 * 118.92100 * 18 17 16 20 20 C 1.34074 * 108.85197 * 359.97438 * 19 18 17 21 21 O 1.21504 * 123.09410 * 180.02562 * 20 19 18 22 22 O 1.33939 * 113.81717 * 359.97438 * 20 19 18 23 23 C 1.52584 * 110.40558 * 56.40237 * 17 16 15 24 24 C 1.46851 * 111.00151 * 59.34567 * 14 2 1 25 25 H 1.08992 * 109.47358 * 300.00838 * 1 2 3 26 26 H 1.09003 * 109.46631 * 60.00891 * 1 2 3 27 27 H 1.09002 * 109.47389 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47174 * 295.00402 * 4 2 1 29 29 H 1.09000 * 109.46910 * 54.99867 * 4 2 1 30 30 H 1.09003 * 109.47124 * 300.00180 * 5 4 2 31 31 H 1.09000 * 109.47449 * 59.99944 * 5 4 2 32 32 H 0.97003 * 119.99961 * 179.97438 * 9 8 6 33 33 H 1.09003 * 109.47167 * 66.32943 * 15 14 2 34 34 H 1.09007 * 109.46957 * 306.32322 * 15 14 2 35 35 H 1.09000 * 109.50043 * 61.61738 * 16 15 14 36 36 H 1.09004 * 109.49636 * 181.68478 * 16 15 14 37 37 H 1.09002 * 110.59652 * 237.44094 * 18 17 16 38 38 H 1.08995 * 110.60665 * 0.23533 * 18 17 16 39 39 H 0.97009 * 125.57461 * 180.02562 * 19 18 17 40 40 H 1.09007 * 109.49712 * 63.54618 * 23 17 16 41 41 H 1.08994 * 109.49751 * 183.64419 * 23 17 16 42 42 H 1.08999 * 109.47414 * 53.67745 * 24 14 2 43 43 H 1.09001 * 109.47679 * 293.66736 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5649 -0.6134 -1.3135 6 6 4.0672 -1.3234 -2.5442 7 1 3.3688 -1.8040 -3.2133 8 6 5.4186 -1.3604 -2.8154 9 7 6.2691 -0.7757 -2.0004 10 14 6.0413 -2.2411 -4.3405 11 1 6.0918 -1.2868 -5.4772 12 1 7.4023 -2.7758 -4.0823 13 1 5.1248 -3.3607 -4.6745 14 7 2.0196 -0.6924 1.1995 15 6 1.6487 0.0391 2.4178 16 6 2.3073 -0.6236 3.6311 17 6 1.8621 -2.0808 3.7137 18 6 2.5402 -2.7776 4.9033 19 7 1.4103 -3.1895 5.7526 20 6 0.2665 -2.8039 5.1690 21 8 -0.8284 -3.0136 5.6522 22 8 0.4419 -2.1653 4.0047 23 6 2.1908 -2.8119 2.4154 24 6 1.5360 -2.0784 1.2414 25 1 -0.3633 0.5139 0.8898 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.7517 -1.7716 -1.2054 29 1 1.6055 -0.2619 -2.1369 30 1 3.8533 0.4368 -1.3572 31 1 3.9995 -1.0729 -0.4257 32 1 7.2198 -0.8021 -2.1910 33 1 0.5654 0.0206 2.5370 34 1 1.9881 1.0719 2.3389 35 1 3.3913 -0.5798 3.5258 36 1 2.0085 -0.0993 4.5388 37 1 3.1045 -3.6476 4.5673 38 1 3.1898 -2.0828 5.4355 39 1 1.4818 -3.6619 6.5969 40 1 3.2714 -2.8337 2.2736 41 1 1.8093 -3.8317 2.4656 42 1 1.7936 -2.5815 0.3094 43 1 0.4535 -2.0819 1.3691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172500052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:46 Heat of formation + Delta-G solvation = -79.282647 kcal Electronic energy + Delta-G solvation = -23429.773577 eV Core-core repulsion = 20088.668414 eV Total energy + Delta-G solvation = -3341.105163 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.99187 -39.07064 -37.31625 -34.93007 -34.54228 -32.88564 -31.14691 -30.58749 -28.98008 -26.52197 -25.13029 -23.52333 -22.95039 -22.70533 -21.36410 -20.38672 -19.05281 -17.52501 -16.79632 -16.51301 -16.20258 -15.94831 -15.05409 -14.88554 -14.54767 -14.43672 -14.15371 -14.07291 -13.69187 -13.24239 -13.07368 -12.83328 -12.36567 -12.22941 -11.94339 -11.54558 -11.49022 -11.43387 -11.36377 -11.04590 -10.89706 -10.83906 -10.46592 -10.41600 -10.33816 -10.05079 -9.64134 -9.54889 -9.22026 -8.91448 -8.27058 -7.80611 -5.92470 -3.93673 2.56206 2.59717 3.32739 3.34251 3.40784 3.43919 3.88963 4.19103 4.29920 4.44552 4.50854 4.90815 5.04146 5.05291 5.18675 5.38745 5.41051 5.43356 5.46540 5.54263 5.59084 5.67915 5.70530 5.73715 5.92239 5.98753 6.09048 6.18906 6.28073 6.31676 6.41062 6.53614 6.65823 6.86834 7.14249 7.25052 7.48825 7.52861 7.81752 7.92877 8.03042 8.17258 8.53481 9.15251 9.69346 11.18360 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024363 B = 0.004054 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.008478 B = 6905.753988 C = 7415.985574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.083 3.917 3 H 0.079 0.921 4 C -0.105 4.105 5 C 0.030 3.970 6 C -0.520 4.520 7 H 0.050 0.950 8 C 0.058 3.942 9 N -0.894 5.894 10 Si 0.885 3.115 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 N -0.518 5.518 15 C 0.054 3.946 16 C -0.114 4.114 17 C 0.098 3.902 18 C 0.073 3.927 19 N -0.739 5.739 20 C 0.643 3.357 21 O -0.533 6.533 22 O -0.315 6.315 23 C -0.115 4.115 24 C 0.052 3.948 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.009 0.991 31 H 0.031 0.969 32 H 0.258 0.742 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.433 0.567 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.523 -1.929 14.490 16.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.025 4.025 3 H 0.097 0.903 4 C -0.143 4.143 5 C -0.007 4.007 6 C -0.558 4.558 7 H 0.069 0.931 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.242 5.242 15 C -0.074 4.074 16 C -0.151 4.151 17 C 0.060 3.940 18 C -0.052 4.052 19 N -0.412 5.412 20 C 0.396 3.604 21 O -0.418 6.418 22 O -0.225 6.225 23 C -0.153 4.153 24 C -0.076 4.076 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.275 0.725 40 H 0.120 0.880 41 H 0.092 0.908 42 H 0.112 0.888 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.576 -1.821 14.400 15.935 hybrid contribution -0.228 -0.685 -0.374 0.812 sum -6.804 -2.505 14.026 15.789 Atomic orbital electron populations 1.22507 0.98766 1.01760 1.01395 1.21846 0.91151 0.98619 0.90841 0.90326 1.21774 1.00821 0.98349 0.93319 1.18995 0.88011 0.96754 0.96908 1.21350 0.91837 1.34106 1.08506 0.93142 1.24974 0.97131 0.95750 0.96413 1.69972 1.02165 1.44385 1.36857 0.86707 0.78120 0.80020 0.83786 1.20835 1.21344 1.20029 1.62083 1.59340 1.01419 1.01322 1.22026 0.97886 0.97964 0.89528 1.21867 1.02658 0.91574 0.99044 1.22986 0.76663 0.98386 0.95951 1.22963 0.90077 1.01085 0.91091 1.46018 1.06148 1.62650 1.26333 1.18689 0.85057 0.76881 0.79743 1.91053 1.25240 1.60307 1.65232 1.87340 1.27684 1.71138 1.36315 1.21894 1.03479 0.98276 0.91606 1.22107 0.96842 0.89902 0.98750 0.93330 0.92329 0.92678 0.93235 0.93246 0.97218 0.95033 0.93246 0.94358 0.90358 0.88178 0.90860 0.88529 0.88646 0.72523 0.87984 0.90764 0.88842 0.94470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.62 8.51 37.16 0.32 -2.30 16 2 C 0.08 1.36 2.35 -67.71 -0.16 1.20 16 3 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 4 C -0.10 -2.07 4.44 -26.73 -0.12 -2.19 16 5 C 0.03 0.76 4.86 -27.89 -0.14 0.62 16 6 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 7 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 10 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 N -0.52 -7.86 4.08 -226.54 -0.92 -8.78 16 15 C 0.05 0.69 4.93 -3.78 -0.02 0.67 16 16 C -0.11 -1.18 4.94 -26.87 -0.13 -1.31 16 17 C 0.10 1.03 0.92 -90.71 -0.08 0.95 16 18 C 0.07 0.54 7.34 -3.31 -0.02 0.52 16 19 N -0.74 -6.57 6.41 -64.82 -0.42 -6.98 16 20 C 0.64 8.71 9.16 53.74 0.49 9.20 16 21 O -0.53 -9.24 18.04 -19.10 -0.34 -9.58 16 22 O -0.31 -4.27 9.87 -38.26 -0.38 -4.65 16 23 C -0.11 -1.33 4.94 -26.87 -0.13 -1.47 16 24 C 0.05 0.74 4.55 -3.78 -0.02 0.72 16 25 H 0.05 0.64 6.66 -51.93 -0.35 0.30 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.78 6.54 -51.93 -0.34 0.44 16 28 H 0.05 0.96 6.04 -51.93 -0.31 0.65 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.03 0.83 7.75 -51.93 -0.40 0.43 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.04 0.52 6.56 -51.93 -0.34 0.18 16 34 H 0.08 0.96 8.07 -51.92 -0.42 0.54 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.58 7.71 -51.93 -0.40 0.18 16 38 H 0.10 0.52 7.71 -51.93 -0.40 0.12 16 39 H 0.43 2.77 8.96 -40.82 -0.37 2.41 16 40 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 1.49 5.91 -51.93 -0.31 1.18 16 43 H 0.04 0.55 6.46 -51.93 -0.34 0.21 16 LS Contribution 333.56 15.07 5.03 5.03 Total: -1.00 -33.16 333.56 -8.64 -41.80 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.89 Total: -0.92 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -0.43 Total: -6.61 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: -0.60 Total: -41.47 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.72 Total: -14.23 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.16 -8.64 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.486 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds