Wall clock time and date at job start Tue Mar 31 2020 05:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47339 * 2 1 4 4 C 1.53004 * 109.47266 * 119.99794 * 2 1 3 5 5 C 1.52999 * 109.47332 * 297.37448 * 4 2 1 6 6 C 1.50692 * 109.47120 * 184.60020 * 5 4 2 7 7 H 1.08003 * 120.00347 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99767 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00086 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 120.00176 * 359.97438 * 8 6 5 11 11 H 1.48491 * 109.47142 * 90.00267 * 10 8 6 12 12 H 1.48498 * 109.47068 * 210.00307 * 10 8 6 13 13 H 1.48503 * 109.46793 * 330.00138 * 10 8 6 14 14 N 1.46906 * 109.47372 * 239.99711 * 2 1 3 15 15 C 1.46857 * 110.99596 * 62.23687 * 14 2 1 16 16 C 1.53137 * 109.45450 * 186.32477 * 15 14 2 17 17 C 1.52594 * 109.30517 * 301.66882 * 16 15 14 18 18 C 1.53633 * 110.27180 * 178.51876 * 17 16 15 19 19 N 1.47221 * 103.58661 * 118.90465 * 18 17 16 20 20 C 1.34081 * 108.85325 * 0.23290 * 19 18 17 21 21 O 1.21509 * 123.09787 * 179.76976 * 20 19 18 22 22 O 1.33943 * 113.81456 * 359.59029 * 20 19 18 23 23 C 1.52586 * 110.39976 * 56.41563 * 17 16 15 24 24 C 1.46843 * 111.00445 * 186.59581 * 14 2 1 25 25 H 1.08996 * 109.46801 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46659 * 300.00101 * 1 2 3 27 27 H 1.09003 * 109.46979 * 60.00020 * 1 2 3 28 28 H 1.09003 * 109.47157 * 57.37455 * 4 2 1 29 29 H 1.09006 * 109.46885 * 177.37244 * 4 2 1 30 30 H 1.09008 * 109.46863 * 304.60295 * 5 4 2 31 31 H 1.09003 * 109.47001 * 64.59583 * 5 4 2 32 32 H 0.96997 * 120.00497 * 179.97438 * 9 8 6 33 33 H 1.09009 * 109.47435 * 66.33074 * 15 14 2 34 34 H 1.08997 * 109.48025 * 306.32197 * 15 14 2 35 35 H 1.09001 * 109.49957 * 181.71737 * 16 15 14 36 36 H 1.09002 * 109.52509 * 61.62997 * 16 15 14 37 37 H 1.09003 * 110.60256 * 0.38197 * 18 17 16 38 38 H 1.09001 * 110.73087 * 237.49806 * 18 17 16 39 39 H 0.97003 * 125.57818 * 179.97438 * 19 18 17 40 40 H 1.08996 * 109.49909 * 63.54505 * 23 17 16 41 41 H 1.09008 * 109.49729 * 183.64139 * 23 17 16 42 42 H 1.09007 * 109.47139 * 293.68263 * 24 14 2 43 43 H 1.08999 * 109.47139 * 53.68315 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5847 0.0372 2.4977 6 6 2.1804 -0.6079 3.7224 7 1 2.8195 -1.4726 3.6207 8 6 1.9087 -0.0948 4.9729 9 7 2.4281 -0.6580 6.0419 10 14 0.8028 1.4004 5.1490 11 1 -0.6071 0.9586 5.2969 12 1 1.2068 2.1764 6.3490 13 1 0.9297 2.2549 3.9411 14 7 2.0197 -0.6926 -1.1994 15 6 1.5930 0.0036 -2.4201 16 6 1.9846 -0.8281 -3.6449 17 6 3.4945 -1.0488 -3.6430 18 6 3.9076 -1.9131 -4.8441 19 7 4.8135 -1.0370 -5.6053 20 6 4.9217 0.1358 -4.9646 21 8 5.6123 1.0508 -5.3677 22 8 4.1957 0.2075 -3.8413 23 6 3.9338 -1.7100 -2.3399 24 6 3.4791 -0.8501 -1.1573 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6388 -1.7344 1.2732 29 1 3.1291 -0.7622 1.2260 30 1 1.9171 1.0734 2.4346 31 1 0.4971 0.0079 2.5641 32 1 2.2373 -0.2968 6.9217 33 1 2.0794 0.9778 -2.4718 34 1 0.5115 0.1378 -2.4028 35 1 1.6955 -0.2978 -4.5523 36 1 1.4761 -1.7916 -3.6088 37 1 3.0367 -2.1779 -5.4437 38 1 4.4305 -2.8101 -4.5124 39 1 5.2619 -1.2714 -6.4329 40 1 3.4836 -2.6998 -2.2644 41 1 5.0199 -1.8019 -2.3266 42 1 3.9522 0.1301 -1.2176 43 1 3.7654 -1.3349 -0.2240 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172500053.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:48 Heat of formation + Delta-G solvation = -76.371280 kcal Electronic energy + Delta-G solvation = -23054.314985 eV Core-core repulsion = 19713.336068 eV Total energy + Delta-G solvation = -3340.978917 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.11986 -39.10037 -37.39783 -35.07965 -34.88418 -32.88934 -31.41614 -31.17388 -29.01295 -26.71022 -25.60442 -23.19353 -23.09975 -22.81663 -21.31063 -20.38787 -19.30997 -17.75318 -16.94795 -16.88825 -16.68172 -15.91226 -15.22421 -14.99907 -14.47846 -14.35738 -14.24157 -14.20656 -14.00852 -13.76799 -13.21691 -12.90592 -12.56694 -12.33876 -12.09749 -11.95263 -11.75602 -11.39963 -11.35324 -11.21410 -10.98196 -10.79504 -10.76908 -10.55955 -10.24734 -9.85858 -9.73385 -9.64505 -9.51090 -9.11697 -8.51794 -8.15310 -6.02952 -4.00503 2.43548 2.49525 3.18975 3.31286 3.39057 3.42631 3.72236 3.97036 4.11670 4.25686 4.46426 4.74432 4.85674 4.88158 4.98636 5.19633 5.30459 5.32822 5.33598 5.36989 5.42900 5.45332 5.61454 5.77967 5.80053 5.82119 5.99368 6.03102 6.18055 6.25412 6.42753 6.47157 6.53785 6.61159 6.92202 7.02557 7.24422 7.27705 7.35689 7.47826 7.82253 7.82655 8.55830 9.02320 9.59948 11.10636 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031197 B = 0.003460 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.294042 B = 8091.180959 C = 8264.957898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.079 3.921 3 H 0.037 0.963 4 C -0.097 4.097 5 C -0.013 4.013 6 C -0.518 4.518 7 H 0.071 0.929 8 C 0.065 3.935 9 N -0.905 5.905 10 Si 0.879 3.121 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.266 1.266 14 N -0.533 5.533 15 C 0.050 3.950 16 C -0.112 4.112 17 C 0.096 3.904 18 C 0.074 3.926 19 N -0.739 5.739 20 C 0.643 3.357 21 O -0.529 6.529 22 O -0.313 6.313 23 C -0.114 4.114 24 C 0.048 3.952 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.012 0.988 31 H 0.014 0.986 32 H 0.262 0.738 33 H 0.038 0.962 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.433 0.567 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.040 0.960 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.909 -4.471 -24.054 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 H 0.055 0.945 4 C -0.135 4.135 5 C -0.051 4.051 6 C -0.556 4.556 7 H 0.089 0.911 8 C -0.135 4.135 9 N -0.544 5.544 10 Si 0.706 3.294 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.190 1.190 14 N -0.258 5.258 15 C -0.078 4.078 16 C -0.150 4.150 17 C 0.058 3.942 18 C -0.051 4.051 19 N -0.412 5.412 20 C 0.396 3.604 21 O -0.414 6.414 22 O -0.224 6.224 23 C -0.151 4.151 24 C -0.080 4.080 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.276 0.724 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.058 0.942 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.870 -4.193 -23.734 24.117 hybrid contribution 0.011 1.315 -0.178 1.327 sum -0.858 -2.878 -23.912 24.100 Atomic orbital electron populations 1.21892 0.94673 1.02333 1.01092 1.21797 0.95536 0.95716 0.89786 0.94528 1.21615 0.99983 0.99521 0.92347 1.19606 0.96241 0.95749 0.93463 1.21147 1.30185 1.14813 0.89479 0.91095 1.25033 0.95735 0.96860 0.95910 1.69915 1.45091 1.41220 0.98181 0.86790 0.81193 0.83657 0.77735 1.20290 1.21453 1.19029 1.62020 1.11016 1.50920 1.01857 1.22091 1.01183 0.95284 0.89201 1.21855 0.91169 1.02825 0.99148 1.22975 0.94095 0.80885 0.96253 1.22937 0.95049 0.94547 0.92576 1.46017 1.51363 1.15120 1.28714 1.18693 0.79279 0.83144 0.79290 1.91070 1.42098 1.40347 1.67851 1.87367 1.57978 1.37140 1.39869 1.21887 1.01513 1.00009 0.91733 1.22161 0.88076 0.99092 0.98629 0.91907 0.91581 0.93680 0.91990 0.92500 0.96938 0.96735 0.92790 0.94359 0.89800 0.90706 0.88473 0.88744 0.88613 0.72439 0.88411 0.90484 0.94220 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.74 37.16 0.32 -1.73 16 2 C 0.08 1.25 2.18 -67.71 -0.15 1.10 16 3 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.10 -1.85 4.30 -26.73 -0.12 -1.97 16 5 C -0.01 -0.30 3.62 -27.89 -0.10 -0.40 16 6 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 7 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 8 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 9 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 10 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 14 N -0.53 -6.97 4.51 -226.55 -1.02 -7.99 16 15 C 0.05 0.56 5.18 -3.78 -0.02 0.54 16 16 C -0.11 -0.92 4.94 -26.87 -0.13 -1.05 16 17 C 0.10 0.83 0.92 -90.71 -0.08 0.75 16 18 C 0.07 0.41 7.33 -3.32 -0.02 0.38 16 19 N -0.74 -5.62 6.41 -64.82 -0.42 -6.03 16 20 C 0.64 8.12 9.16 53.74 0.49 8.62 16 21 O -0.53 -8.87 18.04 -19.10 -0.34 -9.21 16 22 O -0.31 -3.97 9.87 -38.27 -0.38 -4.35 16 23 C -0.11 -1.05 4.95 -26.88 -0.13 -1.18 16 24 C 0.05 0.62 5.01 -3.79 -0.02 0.60 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.07 1.03 6.60 -51.93 -0.34 0.69 16 27 H 0.04 0.55 6.32 -51.93 -0.33 0.22 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.10 6.03 -51.93 -0.31 0.79 16 30 H 0.01 0.30 7.20 -51.92 -0.37 -0.08 16 31 H 0.01 0.33 6.16 -51.93 -0.32 0.01 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.04 0.49 7.95 -51.92 -0.41 0.08 16 34 H 0.08 0.87 6.06 -51.93 -0.31 0.56 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.32 7.71 -51.93 -0.40 -0.08 16 38 H 0.10 0.36 7.72 -51.93 -0.40 -0.04 16 39 H 0.43 2.26 8.96 -40.82 -0.37 1.89 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.68 8.14 -51.92 -0.42 0.25 16 42 H 0.04 0.57 7.95 -51.93 -0.41 0.16 16 43 H 0.10 1.32 5.78 -51.93 -0.30 1.02 16 LS Contribution 330.23 15.07 4.98 4.98 Total: -1.00 -34.36 330.23 -8.30 -42.66 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -6.83 Total: -2.39 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -0.39 Total: -7.56 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: -0.66 Total: -41.23 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.72 Total: -13.56 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.36 -8.30 -42.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500053.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.711 kcal (2) G-P(sol) polarization free energy of solvation -34.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds