Wall clock time and date at job start Tue Mar 31 2020 06:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45203 * 109.47078 * 2 1 4 4 C 1.34233 * 116.99935 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00181 * 180.02562 * 4 3 2 7 7 C 1.50694 * 109.47245 * 185.41818 * 6 4 3 8 8 N 1.29325 * 119.99941 * 256.04469 * 7 6 4 9 9 N 1.37002 * 120.00358 * 76.03896 * 7 6 4 10 10 C 1.46501 * 120.00288 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47033 * 155.00404 * 10 9 7 12 12 C 1.52999 * 109.46972 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47237 * 300.00043 * 12 11 10 14 14 C 1.50699 * 109.47689 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99510 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00328 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99709 * 359.71798 * 16 14 13 18 18 Si 1.86799 * 119.99896 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47144 * 59.99996 * 18 16 14 20 20 H 1.48502 * 109.47362 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47367 * 299.99889 * 18 16 14 22 22 C 1.52994 * 109.47308 * 59.99547 * 13 12 11 23 23 C 1.52999 * 109.47655 * 300.00607 * 22 13 12 24 24 H 1.08999 * 109.46845 * 60.00134 * 1 2 3 25 25 H 1.08997 * 109.46840 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46826 * 299.99932 * 1 2 3 27 27 H 1.09005 * 109.47184 * 239.99809 * 2 1 3 28 28 H 1.09004 * 109.47213 * 120.00142 * 2 1 3 29 29 H 1.08996 * 109.47366 * 65.40861 * 6 4 3 30 30 H 1.09003 * 109.46360 * 305.41238 * 6 4 3 31 31 H 0.97006 * 119.99627 * 354.95686 * 8 7 6 32 32 H 0.97005 * 119.99772 * 0.02562 * 9 7 6 33 33 H 1.09004 * 109.46657 * 35.00188 * 10 9 7 34 34 H 1.08996 * 109.47290 * 60.00322 * 11 10 9 35 35 H 1.09001 * 109.47205 * 299.99590 * 11 10 9 36 36 H 1.09002 * 109.47520 * 179.97438 * 12 11 10 37 37 H 1.09010 * 109.47285 * 59.99924 * 12 11 10 38 38 H 1.09010 * 109.46886 * 300.00125 * 13 12 11 39 39 H 0.97009 * 119.99752 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.47262 * 60.00732 * 22 13 12 41 41 H 1.08998 * 109.47525 * 180.02562 * 22 13 12 42 42 H 1.09004 * 109.46567 * 299.99925 * 23 22 13 43 43 H 1.08997 * 109.47456 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0012 7 6 5.4199 2.8610 -0.1325 8 7 6.1721 3.0582 0.9009 9 7 5.9860 2.5825 -1.3486 10 6 7.4433 2.5087 -1.4786 11 6 7.8047 1.6184 -2.6692 12 6 9.3267 1.5409 -2.8046 13 6 9.8910 2.9453 -3.0281 14 6 11.3901 2.8690 -3.1621 15 1 11.8904 1.9143 -3.0942 16 6 12.1230 4.0180 -3.3714 17 7 11.5132 5.1798 -3.4596 18 14 13.9812 3.9233 -3.5368 19 1 14.3320 3.0586 -4.6920 20 1 14.5289 5.2863 -3.7550 21 1 14.5601 3.3498 -2.2953 22 6 9.5296 3.8357 -1.8376 23 6 8.0076 3.9132 -1.7021 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.6642 3.4364 0.9356 30 1 3.5097 3.5009 -0.8364 31 1 5.7762 3.3271 1.7447 32 1 5.4218 2.4348 -2.1238 33 1 7.8684 2.0875 -0.5676 34 1 7.3796 2.0397 -3.5802 35 1 7.4031 0.6177 -2.5097 36 1 9.5843 0.9063 -3.6526 37 1 9.7516 1.1194 -1.8935 38 1 9.4662 3.3669 -3.9392 39 1 12.0288 5.9882 -3.6073 40 1 9.9544 3.4143 -0.9265 41 1 9.9312 4.8363 -1.9970 42 1 7.5828 4.3347 -2.6132 43 1 7.7501 4.5471 -0.8537 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173325837.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:31 Heat of formation + Delta-G solvation = -88.288440 kcal Electronic energy + Delta-G solvation = -22271.896992 eV Core-core repulsion = 18930.401308 eV Total energy + Delta-G solvation = -3341.495684 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.80923 -38.58849 -37.12015 -36.11916 -33.25539 -32.21688 -31.53808 -29.92628 -29.54218 -28.25257 -24.53244 -23.74897 -21.87391 -21.56408 -20.79598 -19.97192 -18.61828 -18.05069 -17.05565 -16.80693 -16.23657 -15.90378 -15.48732 -14.64476 -14.53570 -14.08340 -13.84948 -13.47815 -13.17748 -13.05647 -13.01966 -12.76070 -12.26710 -12.16743 -12.02366 -11.92227 -11.31249 -11.14254 -10.93581 -10.88489 -10.74389 -10.64152 -10.46421 -10.21646 -10.10635 -9.72847 -9.24298 -9.07860 -8.83605 -8.57411 -8.20978 -7.78262 -5.88952 -3.94584 1.91078 2.07797 3.01447 3.37971 3.42204 3.45244 3.53608 4.31450 4.51590 4.52217 4.54388 4.62100 4.75013 4.88385 5.07726 5.29975 5.36783 5.40369 5.54413 5.56271 5.71474 5.78979 6.03461 6.11088 6.30669 6.44110 6.48147 6.62290 6.77267 6.83051 6.89996 7.07642 7.22234 7.40294 7.44985 7.58292 7.62532 7.79606 7.85655 8.13439 8.27603 8.57783 8.77744 9.09325 9.69376 11.16581 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.045528 B = 0.002946 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.852043 B = 9501.650352 C = 9790.798381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.361 6.361 4 C 0.464 3.536 5 O -0.488 6.488 6 C -0.126 4.126 7 C 0.433 3.567 8 N -0.761 5.761 9 N -0.706 5.706 10 C 0.164 3.836 11 C -0.123 4.123 12 C -0.104 4.104 13 C 0.048 3.952 14 C -0.512 4.512 15 H 0.053 0.947 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.888 3.112 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.106 4.106 23 C -0.119 4.119 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.338 0.662 32 H 0.396 0.604 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.024 0.976 39 H 0.259 0.741 40 H 0.034 0.966 41 H 0.090 0.910 42 H 0.046 0.954 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.424 -5.569 5.907 23.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.278 6.278 4 C 0.304 3.696 5 O -0.373 6.373 6 C -0.169 4.169 7 C 0.147 3.853 8 N -0.394 5.394 9 N -0.342 5.342 10 C 0.060 3.940 11 C -0.161 4.161 12 C -0.142 4.142 13 C 0.029 3.971 14 C -0.550 4.550 15 H 0.071 0.929 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.717 3.283 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.144 4.144 23 C -0.158 4.158 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.154 0.846 32 H 0.229 0.771 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.109 0.891 42 H 0.065 0.935 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -21.012 -5.768 6.082 22.623 hybrid contribution -0.290 -0.043 -0.034 0.295 sum -21.303 -5.811 6.049 22.895 Atomic orbital electron populations 1.21811 0.92513 1.03065 1.03548 1.23053 0.95375 0.80004 1.02820 1.86496 1.24406 1.32667 1.84252 1.23368 0.80702 0.92284 0.73246 1.90769 1.60154 1.42732 1.43681 1.21603 0.95225 0.92551 1.07477 1.20558 0.86049 0.90305 0.88390 1.68950 1.40085 1.28098 1.02222 1.44458 1.07883 1.75405 1.06440 1.21019 0.77227 0.96752 0.98988 1.21842 0.99056 0.98020 0.97216 1.21575 0.91575 1.00799 1.00271 1.18675 0.94798 0.89245 0.94339 1.21206 0.92049 0.93069 1.48672 0.92898 1.24959 0.98114 0.95582 0.95363 1.69877 1.35118 0.97960 1.50039 0.86722 0.86180 0.76894 0.78548 1.20427 1.21419 1.20346 1.21563 0.90347 1.04110 0.98397 1.21927 0.99027 0.95079 0.99792 0.91385 0.90162 0.91478 0.91033 0.91182 0.85840 0.86029 0.84585 0.77070 0.89700 0.92553 0.93272 0.93271 0.93196 0.95808 0.93130 0.94679 0.89128 0.93495 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.29 37.16 0.38 -0.39 16 2 C 0.06 0.48 6.19 37.16 0.23 0.71 16 3 O -0.36 -3.40 10.22 -39.27 -0.40 -3.81 16 4 C 0.46 5.11 7.94 36.00 0.29 5.40 16 5 O -0.49 -7.18 15.79 -18.75 -0.30 -7.48 16 6 C -0.13 -1.15 6.21 -29.04 -0.18 -1.33 16 7 C 0.43 5.92 6.41 -154.56 -0.99 4.93 16 8 N -0.76 -11.96 12.83 32.89 0.42 -11.54 16 9 N -0.71 -10.32 5.16 -51.59 -0.27 -10.59 16 10 C 0.16 2.96 2.45 -67.93 -0.17 2.79 16 11 C -0.12 -2.20 5.39 -26.73 -0.14 -2.34 16 12 C -0.10 -2.21 5.14 -26.73 -0.14 -2.35 16 13 C 0.05 1.20 2.10 -91.78 -0.19 1.01 16 14 C -0.51 -14.28 8.56 -34.44 -0.29 -14.58 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 17 N -0.89 -25.80 11.33 55.43 0.63 -25.17 16 18 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C -0.11 -2.56 4.98 -26.73 -0.13 -2.69 16 23 C -0.12 -2.41 5.50 -26.73 -0.15 -2.55 16 24 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.12 0.84 7.92 -51.93 -0.41 0.43 16 30 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.34 4.46 8.61 -40.82 -0.35 4.11 16 32 H 0.40 4.86 8.63 -40.82 -0.35 4.51 16 33 H 0.08 1.74 7.52 -51.93 -0.39 1.35 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 38 H 0.02 0.65 8.14 -51.92 -0.42 0.22 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.09 2.46 6.08 -51.93 -0.32 2.15 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 351.46 15.07 5.30 5.30 Total: -1.00 -32.43 351.46 -8.50 -40.94 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.28 Total: 5.47 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -1.58 Total: -9.79 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.78 Total: -47.29 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.70 Total: -11.29 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.43 -8.50 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325837.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.352 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds