Wall clock time and date at job start Tue Mar 31 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45203 * 109.47078 * 2 1 4 4 C 1.34233 * 116.99935 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00181 * 180.02562 * 4 3 2 7 7 C 1.50694 * 109.47245 * 185.41818 * 6 4 3 8 8 N 1.29325 * 119.99941 * 256.04469 * 7 6 4 9 9 N 1.37002 * 120.00358 * 76.03896 * 7 6 4 10 10 C 1.46501 * 120.00288 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47033 * 155.00404 * 10 9 7 12 12 C 1.52999 * 109.46972 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47237 * 300.00043 * 12 11 10 14 14 C 1.50699 * 109.47689 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99510 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00328 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99709 * 359.71798 * 16 14 13 18 18 Si 1.86799 * 119.99896 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47144 * 59.99996 * 18 16 14 20 20 H 1.48502 * 109.47362 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47367 * 299.99889 * 18 16 14 22 22 C 1.52994 * 109.47308 * 59.99547 * 13 12 11 23 23 C 1.52999 * 109.47655 * 300.00607 * 22 13 12 24 24 H 1.08999 * 109.46845 * 60.00134 * 1 2 3 25 25 H 1.08997 * 109.46840 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46826 * 299.99932 * 1 2 3 27 27 H 1.09005 * 109.47184 * 239.99809 * 2 1 3 28 28 H 1.09004 * 109.47213 * 120.00142 * 2 1 3 29 29 H 1.08996 * 109.47366 * 65.40861 * 6 4 3 30 30 H 1.09003 * 109.46360 * 305.41238 * 6 4 3 31 31 H 0.97006 * 119.99627 * 354.95686 * 8 7 6 32 32 H 0.97005 * 119.99772 * 0.02562 * 9 7 6 33 33 H 1.09004 * 109.46657 * 35.00188 * 10 9 7 34 34 H 1.08996 * 109.47290 * 60.00322 * 11 10 9 35 35 H 1.09001 * 109.47205 * 299.99590 * 11 10 9 36 36 H 1.09002 * 109.47520 * 179.97438 * 12 11 10 37 37 H 1.09010 * 109.47285 * 59.99924 * 12 11 10 38 38 H 1.09010 * 109.46886 * 300.00125 * 13 12 11 39 39 H 0.97009 * 119.99752 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.47262 * 60.00732 * 22 13 12 41 41 H 1.08998 * 109.47525 * 180.02562 * 22 13 12 42 42 H 1.09004 * 109.46567 * 299.99925 * 23 22 13 43 43 H 1.08997 * 109.47456 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0012 7 6 5.4199 2.8610 -0.1325 8 7 6.1721 3.0582 0.9009 9 7 5.9860 2.5825 -1.3486 10 6 7.4433 2.5087 -1.4786 11 6 7.8047 1.6184 -2.6692 12 6 9.3267 1.5409 -2.8046 13 6 9.8910 2.9453 -3.0281 14 6 11.3901 2.8690 -3.1621 15 1 11.8904 1.9143 -3.0942 16 6 12.1230 4.0180 -3.3714 17 7 11.5132 5.1798 -3.4596 18 14 13.9812 3.9233 -3.5368 19 1 14.3320 3.0586 -4.6920 20 1 14.5289 5.2863 -3.7550 21 1 14.5601 3.3498 -2.2953 22 6 9.5296 3.8357 -1.8376 23 6 8.0076 3.9132 -1.7021 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.6642 3.4364 0.9356 30 1 3.5097 3.5009 -0.8364 31 1 5.7762 3.3271 1.7447 32 1 5.4218 2.4348 -2.1238 33 1 7.8684 2.0875 -0.5676 34 1 7.3796 2.0397 -3.5802 35 1 7.4031 0.6177 -2.5097 36 1 9.5843 0.9063 -3.6526 37 1 9.7516 1.1194 -1.8935 38 1 9.4662 3.3669 -3.9392 39 1 12.0288 5.9882 -3.6073 40 1 9.9544 3.4143 -0.9265 41 1 9.9312 4.8363 -1.9970 42 1 7.5828 4.3347 -2.6132 43 1 7.7501 4.5471 -0.8537 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173325837.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:30 Heat of formation + Delta-G solvation = -108.215570 kcal Electronic energy + Delta-G solvation = -22272.761097 eV Core-core repulsion = 18930.401308 eV Total energy + Delta-G solvation = -3342.359789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.65284 -39.98296 -38.21340 -37.31303 -35.00211 -33.26373 -32.72335 -31.38453 -30.75874 -29.86625 -26.43019 -24.43856 -23.28439 -22.91871 -22.15971 -21.22179 -20.34693 -18.85455 -18.36168 -17.86107 -17.73872 -17.03434 -16.63070 -16.42868 -15.46353 -15.32037 -15.08984 -14.77819 -14.67114 -14.42823 -14.07425 -13.66747 -13.60795 -13.58036 -12.97519 -12.88665 -12.83378 -12.68918 -12.55179 -12.48857 -12.27067 -12.05315 -11.81928 -11.70915 -11.54344 -11.46149 -11.13754 -10.77246 -10.53382 -10.35130 -10.08366 -9.05469 -8.04033 -6.17479 1.09138 1.24615 1.42227 1.43780 1.51089 2.07043 2.41924 2.47143 3.22102 3.46428 3.81640 3.98801 4.00575 4.08307 4.12402 4.16168 4.35418 4.39311 4.46221 4.60345 4.63420 4.75143 4.84741 4.88089 4.93417 4.95378 5.04104 5.11990 5.14691 5.22770 5.41487 5.42692 5.45983 5.50914 5.66387 5.73487 6.08009 6.22527 6.40319 6.46666 6.64074 6.65692 6.94832 7.49794 7.75682 8.99655 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.045528 B = 0.002946 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.852043 B = 9501.650352 C = 9790.798381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 O -0.356 6.356 4 C 0.469 3.531 5 O -0.531 6.531 6 C -0.115 4.115 7 C 0.430 3.570 8 N -0.801 5.801 9 N -0.703 5.703 10 C 0.178 3.822 11 C -0.113 4.113 12 C -0.099 4.099 13 C 0.046 3.954 14 C -0.536 4.536 15 H 0.049 0.951 16 C 0.012 3.988 17 N -0.916 5.916 18 Si 0.950 3.050 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.274 1.274 22 C -0.097 4.097 23 C -0.104 4.104 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.152 0.848 30 H 0.156 0.844 31 H 0.349 0.651 32 H 0.410 0.590 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.041 0.959 38 H -0.001 1.001 39 H 0.259 0.741 40 H 0.018 0.982 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.342 -5.979 5.835 25.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 O -0.273 6.273 4 C 0.312 3.688 5 O -0.420 6.420 6 C -0.157 4.157 7 C 0.145 3.855 8 N -0.435 5.435 9 N -0.341 5.341 10 C 0.073 3.927 11 C -0.151 4.151 12 C -0.137 4.137 13 C 0.028 3.972 14 C -0.574 4.574 15 H 0.068 0.932 16 C -0.187 4.187 17 N -0.555 5.555 18 Si 0.776 3.224 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.200 1.200 22 C -0.136 4.136 23 C -0.143 4.143 24 H 0.090 0.910 25 H 0.115 0.885 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.170 0.830 30 H 0.174 0.826 31 H 0.166 0.834 32 H 0.246 0.754 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.018 0.982 39 H 0.068 0.932 40 H 0.037 0.963 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -22.982 -6.179 6.010 24.545 hybrid contribution 0.278 0.081 0.016 0.290 sum -22.704 -6.098 6.026 24.269 Atomic orbital electron populations 1.21822 0.90256 1.04322 1.03889 1.23286 0.97123 0.79176 1.02449 1.86501 1.23434 1.33650 1.83671 1.23639 0.80892 0.92386 0.71909 1.90763 1.61110 1.44195 1.45933 1.21565 0.91599 0.92079 1.10434 1.20963 0.88336 0.88831 0.87359 1.68892 1.42120 1.29145 1.03373 1.44238 1.06372 1.75744 1.07724 1.20541 0.79487 0.94816 0.97895 1.21715 0.96429 0.99246 0.97678 1.21441 0.94045 0.98173 1.00010 1.18635 0.93655 0.91571 0.93364 1.21613 0.93853 0.93075 1.48855 0.93232 1.25726 1.02561 0.95294 0.95104 1.70015 1.36623 0.98415 1.50485 0.85735 0.80878 0.77077 0.78694 1.19588 1.20931 1.19970 1.21351 0.93258 1.01769 0.97231 1.21722 0.96025 0.96834 0.99737 0.91000 0.88479 0.91118 0.91400 0.91701 0.83041 0.82617 0.83415 0.75394 0.92163 0.91212 0.91253 0.92831 0.93970 0.98239 0.93159 0.96329 0.92439 0.93182 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.29 71.98 0.74 -0.40 16 2 C 0.05 0.74 6.19 71.98 0.45 1.19 16 3 O -0.36 -5.88 10.22 -51.45 -0.53 -6.40 16 4 C 0.47 9.30 7.94 71.24 0.57 9.87 16 5 O -0.53 -15.00 15.79 21.96 0.35 -14.65 16 6 C -0.12 -1.73 6.21 29.10 0.18 -1.55 16 7 C 0.43 10.95 6.41 137.83 0.88 11.83 16 8 N -0.80 -24.43 12.83 -49.85 -0.64 -25.07 16 9 N -0.70 -19.26 5.16 -317.14 -1.64 -20.90 16 10 C 0.18 6.30 2.45 44.99 0.11 6.41 16 11 C -0.11 -3.87 5.39 30.59 0.16 -3.71 16 12 C -0.10 -4.18 5.14 30.59 0.16 -4.02 16 13 C 0.05 2.37 2.10 -11.54 -0.02 2.35 16 14 C -0.54 -30.53 8.56 25.60 0.22 -30.31 16 15 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16 16 C 0.01 0.66 5.30 84.66 0.45 1.11 16 17 N -0.92 -54.21 11.33 21.45 0.24 -53.97 16 18 Si 0.95 44.90 29.54 68.60 2.03 46.92 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 22 C -0.10 -4.87 4.98 30.59 0.15 -4.72 16 23 C -0.10 -4.21 5.50 30.59 0.17 -4.05 16 24 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.06 0.97 8.13 -2.38 -0.02 0.95 16 29 H 0.15 1.49 7.92 -2.39 -0.02 1.48 16 30 H 0.16 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.35 8.84 8.61 -92.70 -0.80 8.04 16 32 H 0.41 8.97 8.63 -92.70 -0.80 8.17 16 33 H 0.06 2.47 7.52 -2.38 -0.02 2.46 16 34 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 39 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 40 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 3.24 6.08 -2.39 -0.01 3.23 16 42 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -71.86 351.46 3.43 -68.43 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -0.59 Total: 21.63 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 4.21 Total: -16.00 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -2.03 Total: -99.93 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.18 Total: -21.05 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -71.86 3.43 -68.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325837.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.785 kcal (2) G-P(sol) polarization free energy of solvation -71.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds