Wall clock time and date at job start Tue Mar 31 2020 05:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.85851 * 2 1 4 4 C 1.54480 * 110.99859 * 123.81357 * 2 1 3 5 5 N 1.46769 * 105.47163 * 92.71856 * 4 2 1 6 6 O 1.41598 * 124.34545 * 197.03539 * 5 4 2 7 7 C 1.34412 * 111.30147 * 17.01376 * 5 4 2 8 8 O 1.21281 * 124.94134 * 179.55922 * 7 5 4 9 9 C 1.51282 * 110.11987 * 359.59270 * 7 5 4 10 10 H 1.08999 * 110.48936 * 102.42243 * 9 7 5 11 11 N 1.46894 * 110.60068 * 225.01706 * 9 7 5 12 12 C 1.46901 * 110.99715 * 269.83831 * 11 9 7 13 13 C 1.52999 * 109.47066 * 274.99702 * 12 11 9 14 14 C 1.52999 * 109.47714 * 300.00234 * 13 12 11 15 15 C 1.53007 * 109.46809 * 300.00111 * 14 13 12 16 16 C 1.50698 * 109.46637 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00222 * 239.99879 * 16 15 14 18 18 C 1.37880 * 119.99846 * 60.00389 * 16 15 14 19 19 N 1.31510 * 120.00366 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99880 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47213 * 89.99774 * 20 18 16 22 22 H 1.48500 * 109.47316 * 209.99746 * 20 18 16 23 23 H 1.48500 * 109.47442 * 329.99795 * 20 18 16 24 24 C 1.53002 * 109.46922 * 59.99839 * 15 14 13 25 25 C 1.53000 * 109.47006 * 299.99565 * 24 15 14 26 26 H 1.08999 * 109.47137 * 180.69699 * 1 2 3 27 27 H 1.09004 * 109.46939 * 300.69927 * 1 2 3 28 28 H 1.09002 * 109.47425 * 60.70047 * 1 2 3 29 29 H 1.09005 * 110.24340 * 211.71355 * 4 2 1 30 30 H 1.08991 * 110.24925 * 333.71515 * 4 2 1 31 31 H 0.96694 * 113.99713 * 179.97438 * 6 5 4 32 32 H 1.00901 * 111.00251 * 145.88361 * 11 9 7 33 33 H 1.08993 * 109.47353 * 35.00036 * 12 11 9 34 34 H 1.09003 * 109.47094 * 60.00563 * 13 12 11 35 35 H 1.09004 * 109.47116 * 180.02562 * 13 12 11 36 36 H 1.08992 * 109.47430 * 180.02562 * 14 13 12 37 37 H 1.09004 * 109.46974 * 59.99735 * 14 13 12 38 38 H 1.08994 * 109.47074 * 299.99542 * 15 14 13 39 39 H 0.96998 * 120.00171 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.46317 * 180.02562 * 24 15 14 41 41 H 1.08994 * 109.47489 * 59.99957 * 24 15 14 42 42 H 1.09004 * 109.47362 * 300.00504 * 25 24 15 43 43 H 1.09002 * 109.46921 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0186 0.0000 4 6 2.0836 -0.8026 1.1983 5 7 2.2865 -2.1665 0.6957 6 8 2.4504 -3.3057 1.5206 7 6 2.2963 -2.1954 -0.6481 8 8 2.4537 -3.1925 -1.3203 9 6 2.0834 -0.8030 -1.2000 10 1 3.0281 -0.3787 -1.5398 11 7 1.1071 -0.8258 -2.2974 12 6 1.7734 -1.0313 -3.5904 13 6 2.2558 0.3145 -4.1352 14 6 1.0583 1.2485 -4.3212 15 6 0.0720 0.6223 -5.3093 16 6 -1.1078 1.5419 -5.4921 17 1 -2.1020 1.2005 -5.2447 18 6 -0.9179 2.8193 -5.9752 19 7 0.2929 3.2353 -6.2761 20 14 -2.3804 3.9589 -6.2024 21 1 -2.6045 4.7316 -4.9542 22 1 -2.1088 4.8956 -7.3223 23 1 -3.5906 3.1558 -6.5115 24 6 -0.4105 -0.7235 -4.7645 25 6 0.7871 -1.6574 -4.5785 26 1 -0.3633 -1.0276 0.0125 27 1 -0.3633 0.5247 0.8837 28 1 -0.3634 0.5029 -0.8962 29 1 3.0310 -0.3784 1.5310 30 1 1.3628 -0.8052 2.0158 31 1 2.5736 -4.1308 1.0317 32 1 0.5531 0.0174 -2.3061 33 1 2.6265 -1.6966 -3.4579 34 1 2.9585 0.7606 -3.4313 35 1 2.7498 0.1621 -5.0948 36 1 1.4020 2.2070 -4.7097 37 1 0.5639 1.4009 -3.3618 38 1 0.5663 0.4699 -6.2687 39 1 0.4265 4.1340 -6.6157 40 1 -1.1128 -1.1697 -5.4687 41 1 -0.9048 -0.5711 -3.8051 42 1 1.2814 -1.8098 -5.5380 43 1 0.4433 -2.6163 -4.1908 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:29 Heat of formation + Delta-G solvation = -36.419397 kcal Electronic energy + Delta-G solvation = -23732.651129 eV Core-core repulsion = 20393.404656 eV Total energy + Delta-G solvation = -3339.246473 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.73332 -38.32070 -36.79822 -36.10805 -33.74242 -32.07341 -30.86388 -29.63590 -28.79318 -26.27961 -26.15820 -24.49596 -21.53454 -21.07960 -20.67110 -20.48043 -18.19964 -17.78133 -16.78470 -16.30605 -16.17097 -15.22186 -14.60864 -14.53986 -14.32568 -14.14666 -13.86991 -13.55077 -13.41410 -13.21573 -12.78666 -12.69130 -12.36948 -12.08966 -11.71825 -11.52024 -11.38774 -11.27034 -11.22281 -11.01722 -10.73642 -10.59472 -10.17694 -10.13750 -9.95133 -9.79479 -9.33098 -8.89340 -8.76773 -8.62545 -8.28278 -8.04098 -5.97105 -4.03034 1.67183 2.50735 3.29641 3.37226 3.40858 4.06784 4.21339 4.32488 4.44630 4.56810 4.85311 5.03818 5.20944 5.31423 5.31979 5.35450 5.50721 5.57122 5.69369 5.73918 5.82005 5.94602 6.21183 6.24100 6.30578 6.39225 6.42866 6.53450 6.60513 6.70731 6.85976 6.99818 7.14120 7.18221 7.22817 7.35010 7.51800 7.72771 7.76292 8.04334 8.15364 8.16534 8.49824 9.01974 9.61828 11.08105 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026765 B = 0.004518 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.895528 B = 6196.275948 C = 6652.822539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.108 0.892 4 C 0.136 3.864 5 N -0.485 5.485 6 O -0.325 6.325 7 C 0.515 3.485 8 O -0.520 6.520 9 C 0.067 3.933 10 H 0.090 0.910 11 N -0.660 5.660 12 C 0.092 3.908 13 C -0.150 4.150 14 C -0.107 4.107 15 C 0.048 3.952 16 C -0.510 4.510 17 H 0.054 0.946 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.887 3.113 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.275 1.275 24 C -0.107 4.107 25 C -0.101 4.101 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.396 0.604 32 H 0.362 0.638 33 H 0.067 0.933 34 H 0.038 0.962 35 H 0.060 0.940 36 H 0.092 0.908 37 H 0.029 0.971 38 H 0.024 0.976 39 H 0.258 0.742 40 H 0.043 0.957 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.918 -5.620 14.077 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 H 0.126 0.874 4 C 0.015 3.985 5 N -0.265 5.265 6 O -0.217 6.217 7 C 0.303 3.697 8 O -0.394 6.394 9 C -0.048 4.048 10 H 0.107 0.893 11 N -0.299 5.299 12 C -0.017 4.017 13 C -0.189 4.189 14 C -0.145 4.145 15 C 0.029 3.971 16 C -0.548 4.548 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.715 3.285 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.200 1.200 24 C -0.145 4.145 25 C -0.139 4.139 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.243 0.757 32 H 0.189 0.811 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.859 -6.265 14.242 16.301 hybrid contribution -0.141 0.895 -0.439 1.007 sum 4.718 -5.370 13.804 15.545 Atomic orbital electron populations 1.21737 0.92295 1.03224 1.02710 1.22492 0.98386 0.99417 0.92231 0.87423 1.22160 1.01682 0.76824 0.97812 1.49678 1.73695 1.00538 1.02579 1.88930 1.97527 1.12886 1.22358 1.21507 0.75574 0.92166 0.80499 1.90718 1.49807 1.36962 1.61909 1.21972 0.98007 0.91565 0.93216 0.89289 1.60569 1.22299 1.45360 1.01643 1.21604 0.95980 0.96114 0.88029 1.22299 0.99612 0.96673 1.00291 1.21597 0.94159 1.00363 0.98352 1.18661 0.94088 0.90188 0.94124 1.21266 0.93505 0.97634 1.42435 0.92798 1.24961 0.95448 0.98115 0.95452 1.69869 1.20207 1.18092 1.44931 0.86676 0.83313 0.80818 0.77658 1.20814 1.21382 1.19991 1.21588 0.95818 0.96999 1.00066 1.21479 0.97061 0.98379 0.97013 0.91700 0.91990 0.90683 0.90402 0.89423 0.75696 0.81086 0.91472 0.94338 0.92082 0.88971 0.95194 0.95830 0.93176 0.93852 0.92971 0.92683 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.43 37.16 0.31 -1.14 16 2 C -0.11 -1.01 3.61 -88.98 -0.32 -1.33 16 3 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.14 1.22 7.21 -3.12 -0.02 1.19 16 5 N -0.48 -5.94 4.30 -59.20 -0.25 -6.19 16 6 O -0.33 -3.75 15.21 -19.41 -0.30 -4.04 16 7 C 0.52 7.55 7.82 -10.86 -0.08 7.47 16 8 O -0.52 -9.38 17.08 -2.39 -0.04 -9.43 16 9 C 0.07 0.86 2.86 -67.72 -0.19 0.67 16 10 H 0.09 1.11 7.20 -51.93 -0.37 0.73 16 11 N -0.66 -10.15 4.96 -99.75 -0.50 -10.65 16 12 C 0.09 1.57 2.66 -67.71 -0.18 1.39 16 13 C -0.15 -2.71 5.50 -26.73 -0.15 -2.86 16 14 C -0.11 -2.31 4.73 -26.73 -0.13 -2.43 16 15 C 0.05 1.14 2.10 -91.77 -0.19 0.95 16 16 C -0.51 -13.56 8.56 -34.44 -0.29 -13.85 16 17 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 19 N -0.89 -24.73 11.32 55.43 0.63 -24.10 16 20 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 24 C -0.11 -2.20 4.90 -26.73 -0.13 -2.34 16 25 C -0.10 -1.86 5.64 -26.73 -0.15 -2.01 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.87 6.41 -51.93 -0.33 0.54 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.68 7.91 -51.93 -0.41 0.27 16 31 H 0.40 3.63 8.69 45.56 0.40 4.02 16 32 H 0.36 5.70 3.28 -39.29 -0.13 5.57 16 33 H 0.07 1.17 7.40 -51.93 -0.38 0.78 16 34 H 0.04 0.63 7.50 -51.93 -0.39 0.24 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 37 H 0.03 0.62 6.26 -51.93 -0.32 0.29 16 38 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 1.06 7.21 -51.93 -0.37 0.68 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 330.33 15.07 4.98 4.98 Total: -1.00 -30.63 330.33 -8.11 -38.74 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -5.99 Total: 7.66 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -1.63 Total: -12.76 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: -0.12 Total: -40.94 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.34 Total: -13.47 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.63 -8.11 -38.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.323 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds