Wall clock time and date at job start Tue Mar 31 2020 05:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99744 * 2 1 4 4 O 1.42903 * 109.46874 * 135.00001 * 3 2 1 5 5 C 1.42895 * 113.99977 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47295 * 29.99186 * 5 4 3 7 7 C 1.53005 * 109.46891 * 269.99806 * 5 4 3 8 8 C 1.50692 * 109.47638 * 149.99665 * 5 4 3 9 9 O 1.21287 * 119.99811 * 10.02560 * 8 5 4 10 10 N 1.34775 * 120.00719 * 190.01886 * 8 5 4 11 11 C 1.47025 * 125.64273 * 4.24316 * 10 8 5 12 12 C 1.54333 * 107.26786 * 178.85209 * 11 10 8 13 13 C 1.55163 * 103.01683 * 338.13805 * 12 11 10 14 14 H 1.09000 * 111.00416 * 277.23646 * 13 12 11 15 15 N 1.46500 * 111.00496 * 153.38129 * 13 12 11 16 16 C 1.46496 * 119.99997 * 307.80884 * 15 13 12 17 17 C 1.36940 * 119.99742 * 127.80168 * 15 13 12 18 18 H 1.07999 * 120.00369 * 325.52710 * 17 15 13 19 19 C 1.38815 * 119.99397 * 145.52421 * 17 15 13 20 20 N 1.31622 * 119.99414 * 157.48207 * 19 17 15 21 21 Si 1.86789 * 120.00273 * 337.47872 * 19 17 15 22 22 H 1.48499 * 109.47135 * 95.30774 * 21 19 17 23 23 H 1.48500 * 109.47239 * 215.30502 * 21 19 17 24 24 H 1.48495 * 109.47365 * 335.30442 * 21 19 17 25 25 C 1.47420 * 125.65515 * 184.55147 * 10 8 5 26 26 H 1.08002 * 119.99882 * 179.97438 * 1 2 3 27 27 H 1.08002 * 120.00462 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99875 * 179.72396 * 2 1 3 29 29 H 1.08992 * 109.47143 * 254.99748 * 3 2 1 30 30 H 1.08995 * 109.46919 * 15.00134 * 3 2 1 31 31 H 1.09002 * 109.46974 * 54.09656 * 7 5 4 32 32 H 1.09002 * 109.47207 * 174.09305 * 7 5 4 33 33 H 1.08995 * 109.46984 * 294.09773 * 7 5 4 34 34 H 1.09001 * 109.88508 * 298.39259 * 11 10 8 35 35 H 1.08997 * 109.88564 * 59.55895 * 11 10 8 36 36 H 1.09004 * 110.85194 * 219.67752 * 12 11 10 37 37 H 1.08998 * 110.67316 * 96.51570 * 12 11 10 38 38 H 1.08996 * 109.47777 * 85.11245 * 16 15 13 39 39 H 1.08999 * 109.47034 * 205.11188 * 16 15 13 40 40 H 1.08993 * 109.46965 * 325.10733 * 16 15 13 41 41 H 0.97001 * 119.99559 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.36482 * 322.92983 * 25 10 8 43 43 H 1.09004 * 110.36789 * 85.14147 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9076 2.4353 1.0329 6 1 3.2832 3.2949 0.7894 7 6 5.0699 2.3520 0.0414 8 6 4.4497 2.5881 2.4306 9 8 4.3490 1.6756 3.2232 10 7 5.0465 3.7387 2.8001 11 6 5.1576 4.9498 1.9740 12 6 5.8897 6.0145 2.8182 13 6 5.6571 5.5276 4.2729 14 1 4.6838 5.8506 4.6422 15 7 6.7308 5.9859 5.1580 16 6 8.1298 5.7350 4.8033 17 6 6.4265 6.6490 6.3169 18 1 5.5722 7.3087 6.3533 19 6 7.2163 6.4732 7.4449 20 7 7.2270 7.3893 8.3899 21 14 8.2636 4.9367 7.6216 22 1 9.6410 5.2188 7.1438 23 1 8.3085 4.5297 9.0490 24 1 7.6739 3.8399 6.8126 25 6 5.7015 3.9891 4.0968 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5401 0.9353 -0.0004 28 1 1.8499 -0.9353 0.0045 29 1 2.4754 1.4868 -0.9926 30 1 1.3854 2.1160 0.2660 31 1 4.6830 2.1369 -0.9547 32 1 5.6036 3.3023 0.0265 33 1 5.7510 1.5575 0.3460 34 1 5.7292 4.7321 1.0718 35 1 4.1638 5.3096 1.7079 36 1 5.4493 7.0000 2.6664 37 1 6.9536 6.0283 2.5816 38 1 8.4839 6.5244 4.1404 39 1 8.7372 5.7210 5.7083 40 1 8.2094 4.7728 4.2975 41 1 7.7786 7.2663 9.1783 42 1 5.1517 3.4993 4.9004 43 1 6.7331 3.6377 4.0748 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194397684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:28 Heat of formation + Delta-G solvation = -19.833308 kcal Electronic energy + Delta-G solvation = -22717.407908 eV Core-core repulsion = 19378.880661 eV Total energy + Delta-G solvation = -3338.527246 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.16988 -38.43807 -37.22688 -35.04985 -34.29518 -32.15254 -31.32367 -30.07073 -28.21115 -26.54446 -26.27379 -24.81564 -22.97378 -22.28077 -20.41999 -19.49403 -19.21912 -17.46726 -17.13914 -16.71305 -16.16119 -16.00764 -15.54428 -15.00524 -14.71769 -14.20246 -13.84259 -13.72428 -13.24336 -13.12101 -12.88649 -12.81600 -12.59534 -12.42202 -12.30200 -12.24373 -11.93869 -11.75244 -11.64434 -11.18764 -10.92898 -10.82477 -10.54973 -10.26568 -10.20241 -9.98303 -9.78873 -9.60725 -9.36648 -8.60600 -8.43826 -6.98298 -6.06069 -3.47004 1.83019 2.70671 2.80768 3.27713 3.46267 3.50856 3.74433 4.39985 4.46613 4.61434 4.68430 4.72883 4.82555 4.84030 4.96321 5.05533 5.15151 5.19330 5.21339 5.30483 5.38524 5.46661 5.53816 5.62862 5.68990 5.82387 5.90616 6.09065 6.17525 6.25333 6.27238 6.31948 6.36521 6.42189 6.58186 6.62571 6.74235 6.89150 7.66878 7.93507 8.27293 8.30514 8.87095 9.62179 9.98851 11.09115 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030553 B = 0.003562 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.209633 B = 7859.694597 C = 8095.835365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.085 3.915 4 O -0.354 6.354 5 C 0.076 3.924 6 H 0.083 0.917 7 C -0.171 4.171 8 C 0.526 3.474 9 O -0.523 6.523 10 N -0.613 5.613 11 C 0.098 3.902 12 C -0.150 4.150 13 C 0.172 3.828 14 H 0.088 0.912 15 N -0.595 5.595 16 C 0.107 3.893 17 C -0.274 4.274 18 H 0.084 0.916 19 C 0.035 3.965 20 N -0.897 5.897 21 Si 0.882 3.118 22 H -0.286 1.286 23 H -0.301 1.301 24 H -0.269 1.269 25 C 0.082 3.918 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.117 0.883 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.020 0.980 39 H 0.050 0.950 40 H 0.030 0.970 41 H 0.265 0.735 42 H 0.076 0.924 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.633 -7.910 -20.777 23.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.167 4.167 3 C 0.009 3.991 4 O -0.272 6.272 5 C 0.015 3.985 6 H 0.101 0.899 7 C -0.228 4.228 8 C 0.312 3.688 9 O -0.398 6.398 10 N -0.349 5.349 11 C -0.025 4.025 12 C -0.189 4.189 13 C 0.063 3.937 14 H 0.106 0.894 15 N -0.316 5.316 16 C -0.038 4.038 17 C -0.403 4.403 18 H 0.101 0.899 19 C -0.166 4.166 20 N -0.538 5.538 21 Si 0.713 3.287 22 H -0.215 1.215 23 H -0.229 1.229 24 H -0.193 1.193 25 C -0.042 4.042 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.135 0.865 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.038 0.962 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.620 -8.569 -20.053 23.100 hybrid contribution 0.655 -0.644 0.001 0.918 sum -6.966 -9.213 -20.052 23.140 Atomic orbital electron populations 1.23837 0.95519 1.02315 1.00089 1.22711 0.95629 0.98150 1.00176 1.21662 0.88758 0.96210 0.92496 1.88084 1.44111 1.34741 1.60249 1.21847 0.93917 0.89263 0.93522 0.89895 1.22255 0.98178 1.03708 0.98707 1.19945 0.78491 0.81542 0.88780 1.90725 1.56465 1.39379 1.53225 1.48443 1.56340 1.12196 1.17959 1.22173 1.00444 0.85405 0.94469 1.23123 1.00952 0.97598 0.97263 1.21600 0.93793 0.89128 0.89188 0.89386 1.44012 0.99293 1.65402 1.22910 1.21357 0.86282 0.97209 0.98915 1.18816 1.15312 1.19565 0.86567 0.89882 1.25419 0.98561 0.97162 0.95426 1.69859 1.40982 1.32465 1.10489 0.86898 0.79703 0.85939 0.76185 1.21453 1.22908 1.19328 1.23135 0.97065 1.00109 0.83860 0.87733 0.88398 0.86458 0.92168 0.92613 0.91245 0.90533 0.91153 0.91646 0.91668 0.90081 0.90521 0.96178 0.93215 0.95123 0.92544 0.90533 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 14.31 29.02 0.42 -0.96 16 2 C -0.15 -1.36 9.89 -36.02 -0.36 -1.72 16 3 C 0.09 0.81 6.16 36.01 0.22 1.03 16 4 O -0.35 -4.78 9.52 -54.94 -0.52 -5.30 16 5 C 0.08 0.91 2.53 -27.88 -0.07 0.84 16 6 H 0.08 0.78 7.56 -51.93 -0.39 0.39 16 7 C -0.17 -1.61 9.40 37.16 0.35 -1.26 16 8 C 0.53 8.64 7.17 -10.99 -0.08 8.57 16 9 O -0.52 -11.09 16.76 -14.16 -0.24 -11.33 16 10 N -0.61 -9.46 3.33 -170.52 -0.57 -10.03 16 11 C 0.10 1.15 6.16 -3.06 -0.02 1.13 16 12 C -0.15 -2.10 6.50 -24.89 -0.16 -2.26 16 13 C 0.17 3.20 3.55 -65.78 -0.23 2.97 16 14 H 0.09 1.69 7.96 -51.93 -0.41 1.27 16 15 N -0.59 -13.49 2.58 -171.03 -0.44 -13.93 16 16 C 0.11 2.23 8.11 59.84 0.49 2.72 16 17 C -0.27 -7.44 9.90 -15.06 -0.15 -7.59 16 18 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 19 C 0.04 1.00 5.30 -17.43 -0.09 0.91 16 20 N -0.90 -26.99 13.97 55.49 0.78 -26.22 16 21 Si 0.88 22.20 24.91 -169.99 -4.23 17.97 16 22 H -0.29 -6.95 6.65 56.52 0.38 -6.57 16 23 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.08 1.52 6.51 -2.53 -0.02 1.51 16 26 H 0.10 0.66 8.06 -52.49 -0.42 0.24 16 27 H 0.10 0.65 7.90 -52.49 -0.41 0.24 16 28 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.06 0.45 7.77 -51.93 -0.40 0.04 16 30 H 0.06 0.47 7.80 -51.93 -0.41 0.07 16 31 H 0.07 0.51 7.77 -51.93 -0.40 0.11 16 32 H 0.08 0.62 5.76 -51.93 -0.30 0.32 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.61 5.98 -51.93 -0.31 0.30 16 35 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.08 6.89 -51.93 -0.36 0.72 16 38 H 0.02 0.39 7.90 -51.93 -0.41 -0.02 16 39 H 0.05 1.15 3.11 -51.93 -0.16 0.99 16 40 H 0.03 0.57 6.37 -51.93 -0.33 0.24 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.08 1.59 8.00 -51.93 -0.42 1.17 16 43 H 0.07 1.25 6.34 -51.93 -0.33 0.92 16 LS Contribution 341.38 15.07 5.14 5.14 Total: -1.00 -33.48 341.38 -6.53 -40.01 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -6.74 Total: -2.19 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 0.29 Total: 5.88 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.23 Total: -50.17 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.76 Total: -16.63 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.23 Total: 17.97 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.48 -6.53 -40.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194397684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.173 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds