Wall clock time and date at job start Tue Mar 31 2020 05:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00383 * 2 1 4 4 O 1.42896 * 109.46956 * 135.00175 * 3 2 1 5 5 C 1.42900 * 113.99786 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47285 * 329.99721 * 5 4 3 7 7 C 1.53004 * 109.47380 * 89.99928 * 5 4 3 8 8 C 1.50698 * 109.47268 * 209.99970 * 5 4 3 9 9 O 1.21287 * 119.99957 * 348.45789 * 8 5 4 10 10 N 1.34773 * 120.00139 * 168.44680 * 8 5 4 11 11 C 1.47425 * 125.65106 * 355.06750 * 10 8 5 12 12 C 1.54910 * 104.83592 * 155.90443 * 11 10 8 13 13 C 1.55162 * 101.57873 * 37.00979 * 12 11 10 14 14 H 1.09000 * 110.72266 * 83.04429 * 13 12 11 15 15 N 1.46504 * 110.71708 * 206.13569 * 13 12 11 16 16 C 1.46502 * 119.99916 * 58.54406 * 15 13 12 17 17 C 1.36933 * 120.00054 * 238.54660 * 15 13 12 18 18 H 1.07999 * 120.00195 * 28.50217 * 17 15 13 19 19 C 1.38808 * 119.99827 * 208.50292 * 17 15 13 20 20 N 1.31613 * 120.00503 * 8.23443 * 19 17 15 21 21 Si 1.86808 * 119.99749 * 188.23043 * 19 17 15 22 22 H 1.48505 * 109.46971 * 90.00127 * 21 19 17 23 23 H 1.48496 * 109.47231 * 209.99854 * 21 19 17 24 24 H 1.48494 * 109.46984 * 330.00442 * 21 19 17 25 25 C 1.47027 * 125.64714 * 175.10454 * 10 8 5 26 26 H 1.07995 * 119.99984 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00248 * 179.97438 * 1 2 3 28 28 H 1.08005 * 120.00005 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46449 * 15.00289 * 3 2 1 30 30 H 1.08995 * 109.47201 * 255.00769 * 3 2 1 31 31 H 1.09000 * 109.47125 * 304.83429 * 7 5 4 32 32 H 1.08994 * 109.46736 * 64.83063 * 7 5 4 33 33 H 1.08997 * 109.47345 * 184.83160 * 7 5 4 34 34 H 1.08999 * 110.36666 * 37.06433 * 11 10 8 35 35 H 1.09008 * 110.36183 * 274.74248 * 11 10 8 36 36 H 1.08994 * 111.00447 * 278.93693 * 12 11 10 37 37 H 1.08996 * 111.00499 * 155.08261 * 12 11 10 38 38 H 1.09004 * 109.46843 * 85.89290 * 16 15 13 39 39 H 1.08994 * 109.47193 * 205.88842 * 16 15 13 40 40 H 1.08998 * 109.47398 * 325.89137 * 16 15 13 41 41 H 0.97001 * 120.00352 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.88344 * 61.60787 * 25 10 8 43 43 H 1.09002 * 109.88246 * 300.44183 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2411 0.9526 5 6 3.9078 2.4351 1.0328 6 1 3.9129 2.9318 0.0626 7 6 3.3032 3.3707 2.0816 8 6 5.3202 2.0860 1.4257 9 8 5.5814 0.9692 1.8203 10 7 6.2930 3.0146 1.3385 11 6 6.1386 4.3712 0.7823 12 6 7.2633 5.2031 1.4478 13 6 8.4202 4.1709 1.5079 14 1 8.9518 4.1316 0.5571 15 7 9.3415 4.4881 2.6019 16 6 8.8473 4.5557 3.9794 17 6 10.6645 4.7215 2.3370 18 1 10.9608 5.1234 1.3793 19 6 11.6249 4.4414 3.2993 20 7 11.2873 3.8038 4.4000 21 14 13.3968 4.9695 3.0319 22 1 13.5961 6.3325 3.5866 23 1 14.3061 4.0176 3.7190 24 1 13.6965 4.9783 1.5775 25 6 7.6843 2.8423 1.7817 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3855 2.1160 0.2660 30 1 2.4755 1.4868 -0.9926 31 1 2.2555 3.5547 1.8435 32 1 3.3763 2.9085 3.0660 33 1 3.8469 4.3154 2.0824 34 1 5.1614 4.7785 1.0416 35 1 6.2687 4.3545 -0.2998 36 1 6.9727 5.5229 2.4484 37 1 7.5347 6.0585 0.8292 38 1 8.8571 3.5580 4.4183 39 1 9.4884 5.2158 4.5634 40 1 7.8286 4.9435 3.9813 41 1 11.9584 3.6084 5.0726 42 1 8.1549 2.0353 1.2202 43 1 7.7086 2.6180 2.8481 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194397691.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:31 Heat of formation + Delta-G solvation = -25.939620 kcal Electronic energy + Delta-G solvation = -22657.320390 eV Core-core repulsion = 19318.528354 eV Total energy + Delta-G solvation = -3338.792036 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.05421 -38.32284 -37.07549 -34.81282 -34.25071 -32.05219 -31.02782 -29.71424 -27.82210 -26.46252 -26.05199 -24.63698 -22.77815 -22.28798 -20.38590 -19.33480 -19.04448 -17.43495 -17.07108 -16.61703 -16.08534 -15.60954 -15.36627 -14.85622 -14.47416 -14.30306 -13.67164 -13.38476 -13.32310 -13.07196 -12.80544 -12.57968 -12.45574 -12.28646 -12.07958 -11.72160 -11.58340 -11.49082 -11.12948 -10.91245 -10.84419 -10.58473 -10.45626 -10.31961 -10.29136 -9.94129 -9.85119 -9.62088 -9.32969 -8.57391 -8.28884 -6.76209 -5.80916 -3.32072 1.84992 2.81695 2.92390 3.35051 3.41321 3.43034 3.82227 4.43055 4.49246 4.67355 4.78866 4.80115 4.91475 4.98191 5.09545 5.17211 5.19889 5.27182 5.40319 5.48239 5.53395 5.58396 5.62518 5.75801 5.89185 5.97036 6.03305 6.28070 6.33608 6.34293 6.36410 6.52296 6.65297 6.83327 6.86976 6.96961 7.31022 7.67028 7.75568 7.80219 8.36225 8.42685 9.16819 9.77341 10.29455 11.25001 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043429 B = 0.003173 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.574354 B = 8821.406484 C = 8982.087231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.146 4.146 3 C 0.085 3.915 4 O -0.353 6.353 5 C 0.076 3.924 6 H 0.081 0.919 7 C -0.171 4.171 8 C 0.524 3.476 9 O -0.524 6.524 10 N -0.612 5.612 11 C 0.094 3.906 12 C -0.153 4.153 13 C 0.172 3.828 14 H 0.079 0.921 15 N -0.584 5.584 16 C 0.160 3.840 17 C -0.264 4.264 18 H 0.069 0.931 19 C 0.008 3.992 20 N -0.902 5.902 21 Si 0.908 3.092 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.089 3.911 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.021 0.979 39 H 0.055 0.945 40 H -0.002 1.002 41 H 0.255 0.745 42 H 0.060 0.940 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.934 1.256 -9.245 21.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.164 4.164 3 C 0.008 3.992 4 O -0.272 6.272 5 C 0.015 3.985 6 H 0.099 0.901 7 C -0.228 4.228 8 C 0.311 3.689 9 O -0.399 6.399 10 N -0.348 5.348 11 C -0.029 4.029 12 C -0.194 4.194 13 C 0.062 3.938 14 H 0.097 0.903 15 N -0.304 5.304 16 C 0.015 3.985 17 C -0.394 4.394 18 H 0.086 0.914 19 C -0.191 4.191 20 N -0.545 5.545 21 Si 0.737 3.263 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.204 1.204 25 C -0.035 4.035 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.136 0.864 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.016 0.984 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.666 0.368 -8.724 20.607 hybrid contribution 0.890 0.385 -0.207 0.991 sum -17.776 0.753 -8.931 19.907 Atomic orbital electron populations 1.23814 0.95472 1.02215 1.00523 1.22751 0.95592 0.98317 0.99767 1.21659 0.89091 0.96060 0.92369 1.88089 1.43826 1.35290 1.59950 1.21857 0.89744 0.87019 0.99902 0.90073 1.22260 1.01324 0.99250 1.00001 1.19926 0.85475 0.84418 0.79114 1.90719 1.82613 1.20648 1.45957 1.48492 1.10962 1.14022 1.61281 1.22476 1.00023 0.82449 0.97948 1.23345 0.95985 0.98819 1.01207 1.21396 0.89636 0.89301 0.93484 0.90302 1.43864 1.05117 1.79727 1.01717 1.20769 0.93170 0.99366 0.85157 1.19188 0.81930 1.36799 1.01484 0.91374 1.25216 0.98173 0.98024 0.97717 1.70034 1.33126 1.42032 1.09342 0.86217 0.84477 0.77824 0.77740 1.21367 1.21629 1.20356 1.22867 0.78897 1.00927 1.00799 0.88475 0.87775 0.86379 0.92624 0.92206 0.91373 0.90988 0.90468 0.91145 0.91571 0.90449 0.90406 0.96088 0.92604 0.98396 0.93482 0.92122 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 14.31 29.02 0.42 -0.95 16 2 C -0.15 -1.39 9.89 -36.02 -0.36 -1.74 16 3 C 0.08 0.84 6.16 36.01 0.22 1.06 16 4 O -0.35 -4.99 9.53 -54.87 -0.52 -5.51 16 5 C 0.08 0.97 2.43 -27.88 -0.07 0.91 16 6 H 0.08 0.81 7.55 -51.93 -0.39 0.41 16 7 C -0.17 -1.80 9.36 37.16 0.35 -1.46 16 8 C 0.52 9.09 7.15 -10.99 -0.08 9.01 16 9 O -0.52 -11.58 16.87 -14.09 -0.24 -11.82 16 10 N -0.61 -10.05 3.33 -170.51 -0.57 -10.62 16 11 C 0.09 1.18 6.51 -2.53 -0.02 1.17 16 12 C -0.15 -2.32 6.63 -24.58 -0.16 -2.48 16 13 C 0.17 3.35 3.45 -66.09 -0.23 3.13 16 14 H 0.08 1.52 7.95 -51.93 -0.41 1.11 16 15 N -0.58 -14.09 2.92 -171.38 -0.50 -14.59 16 16 C 0.16 3.84 7.85 59.85 0.47 4.31 16 17 C -0.26 -7.02 9.55 -15.06 -0.14 -7.16 16 18 H 0.07 1.75 7.84 -52.49 -0.41 1.34 16 19 C 0.01 0.23 5.12 -17.43 -0.09 0.14 16 20 N -0.90 -26.00 10.86 55.49 0.60 -25.40 16 21 Si 0.91 21.39 29.56 -169.99 -5.03 16.36 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C 0.09 1.76 6.50 -3.06 -0.02 1.74 16 26 H 0.10 0.60 7.90 -52.49 -0.41 0.19 16 27 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 28 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 29 H 0.06 0.44 7.51 -51.93 -0.39 0.05 16 30 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.07 0.57 7.79 -51.93 -0.40 0.16 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.73 5.87 -51.93 -0.30 0.42 16 34 H 0.07 0.70 5.40 -51.93 -0.28 0.42 16 35 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 36 H 0.08 1.25 6.27 -51.93 -0.33 0.92 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.02 0.55 7.31 -51.93 -0.38 0.17 16 39 H 0.06 1.45 6.97 -51.93 -0.36 1.09 16 40 H 0.00 -0.05 6.28 -51.93 -0.33 -0.37 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.07 1.67 6.67 -51.93 -0.35 1.32 16 LS Contribution 345.69 15.07 5.21 5.21 Total: -1.00 -32.63 345.69 -7.59 -40.23 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.84 Total: -1.51 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 0.29 Total: 7.66 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.47 Total: -50.61 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.76 Total: -17.34 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.63 -7.59 -40.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194397691.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.286 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds