Wall clock time and date at job start Tue Mar 31 2020 05:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 120.00073 * 2 1 4 4 O 1.42896 * 109.47195 * 134.99694 * 3 2 1 5 5 C 1.42901 * 113.99910 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47408 * 330.00239 * 5 4 3 7 7 C 1.52995 * 109.46978 * 90.00710 * 5 4 3 8 8 C 1.50703 * 109.47270 * 210.00576 * 5 4 3 9 9 O 1.21280 * 119.99872 * 346.80437 * 8 5 4 10 10 N 1.34778 * 120.00009 * 166.80426 * 8 5 4 11 11 C 1.47019 * 125.65061 * 4.44034 * 10 8 5 12 12 C 1.54334 * 107.26783 * 178.84875 * 11 10 8 13 13 C 1.55157 * 103.01625 * 338.13737 * 12 11 10 14 14 H 1.08996 * 111.04194 * 277.21610 * 13 12 11 15 15 N 1.46504 * 110.99980 * 153.38021 * 13 12 11 16 16 C 1.46500 * 120.00278 * 307.80480 * 15 13 12 17 17 C 1.36938 * 119.99711 * 127.80439 * 15 13 12 18 18 H 1.07998 * 120.00256 * 23.63026 * 17 15 13 19 19 C 1.38820 * 119.99742 * 203.62870 * 17 15 13 20 20 N 1.31617 * 119.99900 * 14.35367 * 19 17 15 21 21 Si 1.86796 * 119.99677 * 194.34889 * 19 17 15 22 22 H 1.48493 * 109.47658 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47055 * 120.00209 * 21 19 17 24 24 H 1.48504 * 109.47066 * 240.00062 * 21 19 17 25 25 C 1.47429 * 125.64587 * 184.74392 * 10 8 5 26 26 H 1.07999 * 120.00044 * 359.97438 * 1 2 3 27 27 H 1.07994 * 119.99601 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.00044 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.46929 * 14.99719 * 3 2 1 30 30 H 1.09000 * 109.47200 * 255.00079 * 3 2 1 31 31 H 1.09004 * 109.47171 * 180.64054 * 7 5 4 32 32 H 1.08998 * 109.47561 * 60.63883 * 7 5 4 33 33 H 1.09006 * 109.47224 * 300.63324 * 7 5 4 34 34 H 1.09008 * 109.87851 * 298.39464 * 11 10 8 35 35 H 1.09000 * 109.88506 * 59.55179 * 11 10 8 36 36 H 1.08999 * 110.84854 * 219.67113 * 12 11 10 37 37 H 1.08998 * 110.66842 * 96.52052 * 12 11 10 38 38 H 1.08996 * 109.47124 * 95.22105 * 16 15 13 39 39 H 1.09003 * 109.47248 * 215.22267 * 16 15 13 40 40 H 1.08996 * 109.47009 * 335.22244 * 16 15 13 41 41 H 0.97002 * 119.99816 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.36516 * 322.93326 * 25 10 8 43 43 H 1.08996 * 110.36585 * 85.14540 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9084 2.4349 1.0320 6 1 3.9137 2.9310 0.0614 7 6 3.3043 3.3714 2.0802 8 6 5.3207 2.0853 1.4251 9 8 5.5757 0.9779 1.8487 10 7 6.3002 3.0034 1.3059 11 6 6.1171 4.4036 0.8968 12 6 7.5057 5.0763 0.9314 13 6 8.3114 4.1653 1.8950 14 1 8.1179 4.4278 2.9351 15 7 9.7449 4.2259 1.5991 16 6 10.2216 3.9924 0.2336 17 6 10.6394 4.5008 2.5989 18 1 10.3777 4.3012 3.6275 19 6 11.8825 5.0359 2.2902 20 7 12.1035 5.5402 1.0947 21 14 13.2417 5.0405 3.5716 22 1 12.7425 4.4199 4.8249 23 1 14.4027 4.2657 3.0645 24 1 13.6606 6.4389 3.8439 25 6 7.7336 2.7681 1.5582 26 1 -0.5400 0.9353 0.0004 27 1 -0.5399 -0.9353 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3855 2.1161 0.2659 30 1 2.4756 1.4868 -0.9926 31 1 3.8939 4.2867 2.1327 32 1 3.3094 2.8796 3.0530 33 1 2.2790 3.6153 1.8018 34 1 5.7083 4.4443 -0.1129 35 1 5.4455 4.9080 1.5914 36 1 7.4361 6.0897 1.3266 37 1 7.9557 5.0810 -0.0613 38 1 10.3443 4.9477 -0.2767 39 1 11.1791 3.4726 0.2668 40 1 9.4959 3.3833 -0.3053 41 1 12.9720 5.9145 0.8791 42 1 7.8640 2.0902 2.4017 43 1 8.2137 2.3617 0.6681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194397693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:33 Heat of formation + Delta-G solvation = -26.457442 kcal Electronic energy + Delta-G solvation = -22555.621752 eV Core-core repulsion = 19216.807262 eV Total energy + Delta-G solvation = -3338.814490 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.10439 -38.35122 -37.11634 -34.85686 -34.27371 -32.07609 -31.03153 -29.75071 -27.86130 -26.48510 -26.07501 -24.68688 -22.86105 -22.18994 -20.40793 -19.39016 -19.13065 -17.48306 -17.03949 -16.61040 -16.01693 -15.83248 -15.37492 -14.96593 -14.50636 -13.93157 -13.82030 -13.46622 -13.32261 -13.02236 -12.91532 -12.70038 -12.51137 -12.32013 -12.13198 -11.92245 -11.65561 -11.31098 -11.14276 -10.96967 -10.80009 -10.53682 -10.51872 -10.34376 -10.24836 -9.91941 -9.87076 -9.64602 -9.38578 -8.62653 -8.36106 -6.82847 -5.79402 -3.27085 1.82918 2.74596 2.87570 3.35307 3.43365 3.45601 3.78661 4.43028 4.46562 4.65406 4.76478 4.77791 4.90146 4.97948 5.07652 5.16347 5.20207 5.22928 5.38413 5.45557 5.53380 5.58398 5.60259 5.73198 5.84482 5.95285 6.00931 6.26149 6.28156 6.32408 6.35042 6.49352 6.60007 6.73233 6.84200 6.92928 7.29339 7.65254 7.73782 7.76383 8.31326 8.35875 9.15752 9.78159 10.26879 11.25071 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.044003 B = 0.003078 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.164636 B = 9094.974131 C = 9193.035577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.146 4.146 3 C 0.085 3.915 4 O -0.354 6.354 5 C 0.076 3.924 6 H 0.083 0.917 7 C -0.172 4.172 8 C 0.527 3.473 9 O -0.526 6.526 10 N -0.612 5.612 11 C 0.097 3.903 12 C -0.151 4.151 13 C 0.174 3.826 14 H 0.079 0.921 15 N -0.585 5.585 16 C 0.158 3.842 17 C -0.260 4.260 18 H 0.070 0.930 19 C 0.005 3.995 20 N -0.903 5.903 21 Si 0.906 3.094 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.086 3.914 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.035 0.965 39 H 0.041 0.959 40 H 0.002 0.998 41 H 0.253 0.747 42 H 0.073 0.927 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.244 -2.565 -4.009 20.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.164 4.164 3 C 0.008 3.992 4 O -0.272 6.272 5 C 0.015 3.985 6 H 0.100 0.900 7 C -0.230 4.230 8 C 0.313 3.687 9 O -0.401 6.401 10 N -0.348 5.348 11 C -0.026 4.026 12 C -0.191 4.191 13 C 0.063 3.937 14 H 0.097 0.903 15 N -0.305 5.305 16 C 0.013 3.987 17 C -0.390 4.390 18 H 0.088 0.912 19 C -0.194 4.194 20 N -0.548 5.548 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.217 1.217 25 C -0.038 4.038 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.136 0.864 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.021 0.979 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.929 -3.317 -3.730 20.544 hybrid contribution 0.711 0.373 0.277 0.849 sum -19.218 -2.944 -3.452 19.746 Atomic orbital electron populations 1.23819 0.95472 1.02228 1.00476 1.22748 0.95590 0.98293 0.99813 1.21663 0.89062 0.96073 0.92379 1.88079 1.43833 1.35334 1.59964 1.21855 0.89648 0.87036 0.99995 0.89958 1.22272 1.01453 0.99398 0.99872 1.19912 0.85509 0.84329 0.78923 1.90709 1.82961 1.21605 1.44831 1.48420 1.08124 1.10933 1.67327 1.22202 0.99652 0.81652 0.99074 1.23215 0.93092 1.00056 1.02711 1.21412 0.84995 0.90105 0.97192 0.90289 1.43820 0.98969 1.80890 1.06803 1.20815 0.95518 0.97978 0.84347 1.19254 0.95042 1.36286 0.88400 0.91201 1.25035 0.99301 0.98107 0.96936 1.70075 1.22577 1.41717 1.20398 0.86173 0.82111 0.77250 0.80927 1.20211 1.21542 1.21699 1.23045 0.78025 1.01308 1.01429 0.88462 0.87769 0.86389 0.92592 0.92176 0.90401 0.90994 0.91389 0.92108 0.91534 0.90386 0.90452 0.94700 0.94056 0.97920 0.93705 0.90851 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 14.31 29.01 0.42 -0.91 16 2 C -0.15 -1.35 9.89 -36.03 -0.36 -1.71 16 3 C 0.08 0.82 6.16 36.01 0.22 1.04 16 4 O -0.35 -4.85 9.54 -54.79 -0.52 -5.37 16 5 C 0.08 0.94 2.53 -27.88 -0.07 0.87 16 6 H 0.08 0.82 7.51 -51.93 -0.39 0.42 16 7 C -0.17 -1.71 9.42 37.15 0.35 -1.36 16 8 C 0.53 8.74 7.16 -10.98 -0.08 8.66 16 9 O -0.53 -11.05 16.78 -14.00 -0.23 -11.29 16 10 N -0.61 -9.70 3.33 -170.51 -0.57 -10.26 16 11 C 0.10 1.24 6.12 -3.06 -0.02 1.23 16 12 C -0.15 -2.40 6.50 -24.89 -0.16 -2.56 16 13 C 0.17 3.38 3.54 -65.78 -0.23 3.15 16 14 H 0.08 1.56 7.96 -51.93 -0.41 1.15 16 15 N -0.58 -14.03 2.95 -171.03 -0.51 -14.54 16 16 C 0.16 3.72 7.57 59.85 0.45 4.17 16 17 C -0.26 -6.95 9.59 -15.06 -0.14 -7.09 16 18 H 0.07 1.84 7.87 -52.49 -0.41 1.42 16 19 C 0.01 0.14 5.07 -17.43 -0.09 0.05 16 20 N -0.90 -25.59 10.82 55.49 0.60 -24.99 16 21 Si 0.91 21.49 29.58 -169.99 -5.03 16.46 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 C 0.09 1.59 6.49 -2.53 -0.02 1.58 16 26 H 0.10 0.59 7.90 -52.49 -0.41 0.17 16 27 H 0.10 0.63 8.06 -52.49 -0.42 0.20 16 28 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.06 0.44 7.58 -51.93 -0.39 0.04 16 30 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.08 0.69 5.62 -51.93 -0.29 0.40 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.53 7.86 -51.93 -0.41 0.12 16 34 H 0.06 0.65 8.01 -51.92 -0.42 0.24 16 35 H 0.07 0.71 5.99 -51.93 -0.31 0.40 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.31 6.99 -51.93 -0.36 0.95 16 38 H 0.03 0.88 7.32 -51.93 -0.38 0.50 16 39 H 0.04 1.06 7.42 -51.93 -0.39 0.67 16 40 H 0.00 0.05 6.38 -51.93 -0.33 -0.28 16 41 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.07 1.46 7.99 -51.93 -0.42 1.05 16 43 H 0.07 1.32 6.43 -51.93 -0.33 0.99 16 LS Contribution 346.30 15.07 5.22 5.22 Total: -1.00 -32.03 346.30 -7.67 -39.70 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -6.91 Total: -2.05 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 0.27 Total: 7.11 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.47 Total: -49.79 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.76 Total: -16.66 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.03 -7.67 -39.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194397693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.246 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds