Wall clock time and date at job start Tue Mar 31 2020 05:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 119.99833 * 2 1 4 4 O 1.42893 * 109.47263 * 135.00305 * 3 2 1 5 5 C 1.42905 * 114.00349 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.46556 * 29.99707 * 5 4 3 7 7 C 1.52997 * 109.46911 * 269.99610 * 5 4 3 8 8 C 1.50699 * 109.47359 * 149.99504 * 5 4 3 9 9 O 1.21288 * 119.99684 * 5.00456 * 8 5 4 10 10 N 1.34769 * 120.00097 * 185.00149 * 8 5 4 11 11 C 1.47423 * 125.64726 * 359.97286 * 10 8 5 12 12 C 1.54916 * 104.83135 * 155.90683 * 11 10 8 13 13 C 1.55161 * 101.57970 * 37.01332 * 12 11 10 14 14 H 1.08991 * 110.71860 * 83.03810 * 13 12 11 15 15 N 1.46500 * 110.71948 * 206.13625 * 13 12 11 16 16 C 1.46500 * 120.00063 * 56.15288 * 15 13 12 17 17 C 1.36937 * 120.00089 * 236.15888 * 15 13 12 18 18 H 1.07997 * 119.99791 * 342.65568 * 17 15 13 19 19 C 1.38809 * 120.00362 * 162.93299 * 17 15 13 20 20 N 1.31620 * 119.99938 * 347.34841 * 19 17 15 21 21 Si 1.86792 * 120.00202 * 167.34812 * 19 17 15 22 22 H 1.48503 * 109.47225 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47204 * 120.00100 * 21 19 17 24 24 H 1.48498 * 109.47610 * 240.00091 * 21 19 17 25 25 C 1.47317 * 125.61671 * 180.19912 * 10 8 5 26 26 H 1.07992 * 120.00033 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.99701 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00115 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47590 * 14.99490 * 3 2 1 30 30 H 1.09010 * 109.46794 * 255.00092 * 3 2 1 31 31 H 1.08997 * 109.46707 * 179.97438 * 7 5 4 32 32 H 1.08993 * 109.47531 * 299.99976 * 7 5 4 33 33 H 1.09004 * 109.46967 * 59.99977 * 7 5 4 34 34 H 1.09001 * 110.36753 * 37.07145 * 11 10 8 35 35 H 1.08996 * 110.46552 * 274.79479 * 11 10 8 36 36 H 1.09001 * 111.00747 * 278.93730 * 12 11 10 37 37 H 1.08995 * 111.03903 * 155.09827 * 12 11 10 38 38 H 1.09001 * 109.47291 * 264.88421 * 16 15 13 39 39 H 1.09003 * 109.46981 * 24.88194 * 16 15 13 40 40 H 1.09000 * 109.47216 * 144.88218 * 16 15 13 41 41 H 0.96994 * 120.00216 * 179.97438 * 20 19 17 42 42 H 1.09005 * 110.06552 * 61.68494 * 25 10 8 43 43 H 1.08999 * 109.85336 * 300.42040 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9084 2.4350 1.0320 6 1 3.2844 3.2948 0.7880 7 6 5.0706 2.3503 0.0405 8 6 4.4507 2.5883 2.4296 9 8 4.2696 1.7133 3.2497 10 7 5.1369 3.6977 2.7683 11 6 5.4292 4.8334 1.8748 12 6 5.6490 6.0380 2.8237 13 6 6.3826 5.3666 4.0147 14 1 7.4493 5.2773 3.8097 15 7 6.1556 6.1166 5.2525 16 6 4.7888 6.3713 5.7145 17 6 7.2208 6.5796 5.9777 18 1 8.2064 6.1707 5.8107 19 6 7.0331 7.5705 6.9315 20 7 5.9001 8.2391 6.9716 21 14 8.3883 7.9549 8.1582 22 1 9.5529 7.0695 7.9029 23 1 8.8032 9.3730 8.0092 24 1 7.8866 7.7283 9.5374 25 6 5.7228 3.9737 4.0915 26 1 -0.5400 -0.9352 0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3855 2.1161 0.2659 30 1 2.4755 1.4868 -0.9928 31 1 5.6666 3.2609 0.1007 32 1 5.6945 1.4905 0.2844 33 1 4.6783 2.2394 -0.9705 34 1 4.5847 5.0218 1.2120 35 1 6.3305 4.6388 1.2936 36 1 4.6973 6.4642 3.1410 37 1 6.2771 6.7957 2.3551 38 1 4.4656 7.3534 5.3691 39 1 4.1218 5.6078 5.3141 40 1 4.7621 6.3423 6.8037 41 1 5.7687 8.9313 7.6383 42 1 6.4733 3.2208 4.3325 43 1 4.9398 3.9756 4.8498 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194397694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:36 Heat of formation + Delta-G solvation = -23.148947 kcal Electronic energy + Delta-G solvation = -22637.012950 eV Core-core repulsion = 19298.341926 eV Total energy + Delta-G solvation = -3338.671023 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.09477 -38.33748 -37.10297 -34.87098 -34.25560 -32.10303 -30.97185 -29.72231 -27.80050 -26.49187 -26.08542 -24.67704 -22.82580 -22.20809 -20.39601 -19.41231 -19.08709 -17.45442 -17.02978 -16.60876 -15.98237 -15.74122 -15.68709 -14.70071 -14.60461 -14.03171 -13.66435 -13.34087 -13.24782 -13.10538 -13.00018 -12.58734 -12.43809 -12.31520 -12.19830 -11.83846 -11.57227 -11.38082 -11.14229 -10.96083 -10.80243 -10.60932 -10.43857 -10.26844 -10.21102 -9.91394 -9.86052 -9.73838 -9.30830 -8.58805 -8.35189 -6.90286 -5.77245 -3.20439 1.86329 2.77952 2.88151 3.36044 3.43573 3.45253 3.79976 4.43929 4.46852 4.66910 4.72496 4.86917 4.88151 4.97590 5.04839 5.21722 5.23392 5.26733 5.38415 5.45831 5.51973 5.56700 5.59269 5.72979 5.83594 5.94023 5.96600 6.28237 6.28877 6.35420 6.35907 6.50375 6.60580 6.79091 6.83261 6.94094 7.41299 7.66818 7.74972 7.79353 8.30693 8.37669 9.17530 9.80218 10.26320 11.27735 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037325 B = 0.003204 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.977871 B = 8737.823839 C = 8917.883245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.148 4.148 3 C 0.085 3.915 4 O -0.354 6.354 5 C 0.076 3.924 6 H 0.084 0.916 7 C -0.173 4.173 8 C 0.525 3.475 9 O -0.526 6.526 10 N -0.611 5.611 11 C 0.097 3.903 12 C -0.151 4.151 13 C 0.174 3.826 14 H 0.079 0.921 15 N -0.589 5.589 16 C 0.162 3.838 17 C -0.256 4.256 18 H 0.073 0.927 19 C 0.000 4.000 20 N -0.909 5.909 21 Si 0.908 3.092 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.088 3.912 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.117 0.883 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.028 0.972 39 H -0.002 1.002 40 H 0.052 0.948 41 H 0.252 0.748 42 H 0.062 0.938 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.992 -9.274 -17.235 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.166 4.166 3 C 0.009 3.991 4 O -0.272 6.272 5 C 0.014 3.986 6 H 0.102 0.898 7 C -0.231 4.231 8 C 0.312 3.688 9 O -0.401 6.401 10 N -0.347 5.347 11 C -0.026 4.026 12 C -0.192 4.192 13 C 0.063 3.937 14 H 0.097 0.903 15 N -0.310 5.310 16 C 0.018 3.982 17 C -0.385 4.385 18 H 0.091 0.909 19 C -0.197 4.197 20 N -0.554 5.554 21 Si 0.738 3.262 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C -0.036 4.036 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.135 0.865 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.046 0.954 39 H 0.017 0.983 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.147 -9.833 -16.524 20.187 hybrid contribution 0.543 0.585 0.454 0.918 sum -5.604 -9.248 -16.070 19.370 Atomic orbital electron populations 1.23836 0.95532 1.02301 1.00140 1.22708 0.95620 0.98140 1.00131 1.21658 0.88793 0.96193 0.92484 1.88074 1.44091 1.34765 1.60244 1.21835 0.93887 0.89243 0.93615 0.89833 1.22293 0.98173 1.04002 0.98616 1.19919 0.78662 0.81195 0.89068 1.90716 1.57467 1.40230 1.51694 1.48505 1.54024 1.17897 1.14254 1.22455 1.00082 0.86664 0.93432 1.23389 1.02614 0.96051 0.97126 1.21274 0.97274 0.88502 0.86670 0.90260 1.43939 1.03597 1.61864 1.21556 1.20837 0.82853 0.95604 0.98894 1.19313 0.88978 1.15244 1.15003 0.90927 1.24933 0.97385 0.96777 1.00654 1.70118 1.24689 1.24402 1.36192 0.86136 0.81138 0.77685 0.81271 1.20321 1.21759 1.21591 1.22868 0.97998 0.99368 0.83343 0.87747 0.88403 0.86475 0.92634 0.92186 0.90356 0.91094 0.91423 0.91469 0.91334 0.90535 0.90251 0.95362 0.98328 0.92951 0.93747 0.91981 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 14.31 29.01 0.42 -1.02 16 2 C -0.15 -1.40 9.89 -36.03 -0.36 -1.75 16 3 C 0.09 0.84 6.16 36.01 0.22 1.06 16 4 O -0.35 -4.91 9.51 -55.09 -0.52 -5.43 16 5 C 0.08 0.94 2.48 -27.88 -0.07 0.87 16 6 H 0.08 0.85 7.26 -51.93 -0.38 0.48 16 7 C -0.17 -1.67 9.39 37.16 0.35 -1.32 16 8 C 0.52 8.83 7.24 -10.99 -0.08 8.75 16 9 O -0.53 -11.24 16.83 -14.31 -0.24 -11.48 16 10 N -0.61 -9.72 3.33 -170.28 -0.57 -10.29 16 11 C 0.10 1.22 5.34 -2.53 -0.01 1.20 16 12 C -0.15 -2.40 6.64 -24.58 -0.16 -2.56 16 13 C 0.17 3.33 3.43 -66.09 -0.23 3.10 16 14 H 0.08 1.49 7.90 -51.93 -0.41 1.08 16 15 N -0.59 -14.20 2.94 -171.39 -0.50 -14.71 16 16 C 0.16 3.95 7.54 59.85 0.45 4.40 16 17 C -0.26 -6.81 9.69 -15.06 -0.15 -6.95 16 18 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 19 C 0.00 0.01 5.13 -17.43 -0.09 -0.08 16 20 N -0.91 -25.90 10.35 55.49 0.57 -25.32 16 21 Si 0.91 21.52 29.57 -169.99 -5.03 16.49 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.09 1.64 6.41 -2.90 -0.02 1.62 16 26 H 0.10 0.68 8.06 -52.49 -0.42 0.26 16 27 H 0.10 0.69 7.90 -52.49 -0.41 0.28 16 28 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.06 0.50 7.81 -51.93 -0.41 0.10 16 30 H 0.06 0.47 7.87 -51.92 -0.41 0.06 16 31 H 0.08 0.66 5.56 -51.93 -0.29 0.38 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 34 H 0.07 0.68 7.33 -51.93 -0.38 0.30 16 35 H 0.07 0.72 7.16 -51.93 -0.37 0.35 16 36 H 0.08 1.33 7.19 -51.93 -0.37 0.96 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.03 0.73 7.51 -51.93 -0.39 0.34 16 39 H 0.00 -0.04 6.45 -51.93 -0.33 -0.37 16 40 H 0.05 1.40 6.91 -51.93 -0.36 1.04 16 41 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.07 1.54 6.29 -51.93 -0.33 1.21 16 LS Contribution 345.18 15.07 5.20 5.20 Total: -1.00 -32.42 345.18 -7.72 -40.14 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -6.91 Total: -1.92 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 0.27 Total: 7.32 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.50 Total: -50.32 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.76 Total: -16.91 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.42 -7.72 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194397694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.986 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds