Wall clock time and date at job start Tue Mar 31 2020 05:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 119.99883 * 2 1 4 4 C 1.50702 * 120.00010 * 180.02562 * 2 1 3 5 5 C 1.52997 * 109.47421 * 94.99371 * 4 2 1 6 6 H 1.08994 * 109.47339 * 305.00414 * 5 4 2 7 7 C 1.53008 * 109.46674 * 64.99903 * 5 4 2 8 8 C 1.50693 * 109.47163 * 184.99872 * 5 4 2 9 9 O 1.21279 * 120.00116 * 0.02562 * 8 5 4 10 10 N 1.34778 * 120.00069 * 180.02562 * 8 5 4 11 11 C 1.46499 * 120.00226 * 180.02562 * 10 8 5 12 12 H 1.09000 * 110.64349 * 31.85723 * 11 10 8 13 13 C 1.54338 * 111.00488 * 268.78374 * 11 10 8 14 14 N 1.47013 * 107.26649 * 219.60407 * 13 11 10 15 15 C 1.36942 * 125.65174 * 178.84862 * 14 13 11 16 16 H 1.07995 * 120.00447 * 191.16060 * 15 14 13 17 17 C 1.38812 * 119.99331 * 11.15843 * 15 14 13 18 18 N 1.31622 * 119.99622 * 206.10057 * 17 15 14 19 19 Si 1.86794 * 120.00338 * 26.37999 * 17 15 14 20 20 H 1.48497 * 109.47225 * 275.46541 * 19 17 15 21 21 H 1.48507 * 109.47407 * 35.46393 * 19 17 15 22 22 H 1.48498 * 109.47203 * 155.46332 * 19 17 15 23 23 C 1.47425 * 108.70473 * 358.57637 * 14 13 11 24 24 C 1.54910 * 104.82988 * 24.36559 * 23 14 13 25 25 H 1.08996 * 111.01205 * 81.05825 * 24 23 14 26 26 O 1.42901 * 111.00288 * 204.87786 * 24 23 14 27 27 H 1.07997 * 119.99887 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.99641 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47076 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47455 * 300.00487 * 3 2 1 31 31 H 1.08996 * 109.47038 * 60.00575 * 3 2 1 32 32 H 1.09006 * 109.46712 * 334.99469 * 4 2 1 33 33 H 1.09001 * 109.46830 * 215.00219 * 4 2 1 34 34 H 1.09000 * 109.46624 * 179.97438 * 7 5 4 35 35 H 1.08994 * 109.47036 * 299.99859 * 7 5 4 36 36 H 1.09002 * 109.46951 * 60.00505 * 7 5 4 37 37 H 0.96999 * 119.99925 * 0.02562 * 10 8 5 38 38 H 1.08998 * 109.99420 * 100.12058 * 13 11 10 39 39 H 1.09008 * 109.77518 * 338.95481 * 13 11 10 40 40 H 0.97001 * 119.99817 * 180.02562 * 18 17 15 41 41 H 1.09004 * 110.36778 * 143.19644 * 23 14 13 42 42 H 1.08993 * 110.37307 * 265.41021 * 23 14 13 43 43 H 0.96702 * 114.00023 * 298.53931 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 -0.0006 5 6 2.4273 -1.6834 -1.4377 6 1 1.5245 -1.7026 -2.0480 7 6 3.4045 -0.6516 -2.0049 8 6 3.0716 -3.0456 -1.4508 9 8 3.2243 -3.6542 -0.4130 10 7 3.4781 -3.5877 -2.6159 11 6 4.1039 -4.9122 -2.6288 12 1 3.6963 -5.5375 -1.8345 13 6 5.6375 -4.8008 -2.4962 14 7 6.2273 -5.8033 -3.3954 15 6 7.5667 -6.0126 -3.5885 16 1 7.9036 -6.6438 -4.3974 17 6 8.4915 -5.4132 -2.7445 18 7 9.7110 -5.1661 -3.1738 19 14 8.0078 -4.9646 -0.9969 20 1 7.3421 -3.6372 -0.9928 21 1 7.0737 -5.9884 -0.4634 22 1 9.2230 -4.9115 -0.1451 23 6 5.1378 -6.5504 -4.0499 24 6 3.9211 -5.5924 -4.0113 25 1 3.9745 -4.8602 -4.8170 26 8 2.6933 -6.3214 -4.0659 27 1 -0.5400 0.9353 0.0004 28 1 -0.5399 -0.9354 0.0004 29 1 3.1352 1.1059 -0.0005 30 1 1.8001 1.8767 -0.8899 31 1 1.8002 1.8766 0.8900 32 1 1.4386 -2.0856 0.4335 33 1 2.9742 -1.1991 0.5890 34 1 3.6640 -0.9214 -3.0286 35 1 2.9384 0.3337 -1.9954 36 1 4.3074 -0.6325 -1.3945 37 1 3.3563 -3.1008 -3.4460 38 1 5.9383 -5.0022 -1.4681 39 1 5.9616 -3.8025 -2.7906 40 1 10.3573 -4.7476 -2.5839 41 1 5.4040 -6.7841 -5.0807 42 1 4.9203 -7.4650 -3.4984 43 1 2.5803 -6.8416 -4.8732 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195525110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:46 Heat of formation + Delta-G solvation = -44.398277 kcal Electronic energy + Delta-G solvation = -23008.898482 eV Core-core repulsion = 19669.306019 eV Total energy + Delta-G solvation = -3339.592463 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.09893 -38.40555 -36.82117 -35.46860 -34.14097 -32.86863 -31.86007 -28.86344 -28.06570 -27.76435 -26.54161 -24.54150 -23.33309 -20.92435 -20.76242 -19.88300 -18.50687 -17.41333 -17.18763 -16.83866 -15.99231 -15.52028 -15.20710 -14.67900 -14.56302 -14.21416 -14.00624 -13.69003 -13.61138 -13.26912 -12.95944 -12.76500 -12.55819 -12.28321 -12.22975 -12.02892 -11.80214 -11.69785 -11.35552 -11.18605 -11.15807 -11.01050 -10.62412 -10.42418 -10.17084 -9.97474 -9.60012 -9.35963 -9.15356 -8.88143 -8.63387 -7.20412 -5.99947 -3.26612 2.00490 2.77396 3.25508 3.37744 3.50976 3.55140 4.17567 4.50741 4.53821 4.67289 4.74969 4.86667 4.94633 4.97580 5.09376 5.23968 5.28595 5.29650 5.33246 5.41108 5.42801 5.56351 5.64858 5.70857 5.76672 5.77458 5.81906 5.83245 6.06037 6.06401 6.26237 6.36075 6.43761 6.44890 6.53872 6.69234 6.78602 7.53131 7.63678 7.74326 8.23570 8.36757 8.74782 9.63266 10.06069 11.15282 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017971 B = 0.004939 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.715221 B = 5668.324958 C = 6677.995207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.101 4.101 6 H 0.097 0.903 7 C -0.150 4.150 8 C 0.516 3.484 9 O -0.538 6.538 10 N -0.715 5.715 11 C 0.142 3.858 12 H 0.104 0.896 13 C 0.111 3.889 14 N -0.605 5.605 15 C -0.249 4.249 16 H 0.098 0.902 17 C 0.025 3.975 18 N -0.901 5.901 19 Si 0.882 3.118 20 H -0.286 1.286 21 H -0.279 1.279 22 H -0.302 1.302 23 C 0.108 3.892 24 C 0.082 3.918 25 H 0.073 0.927 26 O -0.561 6.561 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.399 0.601 38 H 0.039 0.961 39 H 0.048 0.952 40 H 0.264 0.736 41 H 0.057 0.943 42 H 0.037 0.963 43 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.129 10.071 -0.248 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.118 4.118 3 C -0.180 4.180 4 C -0.107 4.107 5 C -0.123 4.123 6 H 0.115 0.885 7 C -0.207 4.207 8 C 0.302 3.698 9 O -0.415 6.415 10 N -0.365 5.365 11 C 0.037 3.963 12 H 0.122 0.878 13 C -0.015 4.015 14 N -0.334 5.334 15 C -0.375 4.375 16 H 0.116 0.884 17 C -0.174 4.174 18 N -0.545 5.545 19 Si 0.713 3.287 20 H -0.213 1.213 21 H -0.206 1.206 22 H -0.230 1.230 23 C -0.019 4.019 24 C 0.021 3.979 25 H 0.090 0.910 26 O -0.365 6.365 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.234 0.766 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -17.827 9.942 1.104 20.442 hybrid contribution -0.070 0.155 0.122 0.209 sum -17.897 10.097 1.226 20.585 Atomic orbital electron populations 1.23665 0.95276 1.01772 1.03095 1.21765 0.95326 0.95680 0.99015 1.20976 1.00543 0.94633 1.01821 1.20539 1.00946 0.94290 0.94935 1.21265 0.99868 0.92333 0.98810 0.88497 1.21928 0.99001 0.98627 1.01139 1.20652 0.77981 0.87589 0.83557 1.90709 1.55707 1.63077 1.31980 1.45888 1.61695 1.19432 1.09532 1.21930 0.93521 0.83211 0.97662 0.87798 1.22035 0.89700 0.94530 0.95215 1.44635 1.02011 1.37080 1.49635 1.18638 0.77694 1.29334 1.11832 0.88432 1.24771 0.95202 0.99039 0.98381 1.69887 1.05378 1.43825 1.35374 0.87073 0.75832 0.78560 0.87222 1.21340 1.20561 1.22979 1.22213 0.87554 0.94085 0.98036 1.23278 0.84232 0.93879 0.96463 0.90967 1.86498 1.38615 1.65778 1.45651 0.88607 0.88470 0.91525 0.91537 0.91724 0.90390 0.90418 0.92024 0.90922 0.91807 0.76609 0.94319 0.93408 0.92622 0.92496 0.94498 0.77514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.75 13.93 29.01 0.40 -1.34 16 2 C -0.12 -1.11 4.94 -101.07 -0.50 -1.61 16 3 C -0.12 -0.97 8.39 36.00 0.30 -0.67 16 4 C -0.07 -0.80 4.14 -27.88 -0.12 -0.92 16 5 C -0.10 -1.16 2.71 -91.77 -0.25 -1.41 16 6 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 7 C -0.15 -1.50 8.26 37.16 0.31 -1.19 16 8 C 0.52 8.17 7.15 -10.99 -0.08 8.09 16 9 O -0.54 -10.84 15.56 5.56 0.09 -10.75 16 10 N -0.71 -10.84 5.01 -52.02 -0.26 -11.10 16 11 C 0.14 2.62 3.04 -66.09 -0.20 2.42 16 12 H 0.10 2.14 7.55 -51.93 -0.39 1.74 16 13 C 0.11 2.54 4.71 -3.06 -0.01 2.52 16 14 N -0.61 -14.65 3.28 -170.07 -0.56 -15.21 16 15 C -0.25 -7.04 10.57 -15.06 -0.16 -7.20 16 16 H 0.10 2.86 8.06 -52.49 -0.42 2.44 16 17 C 0.03 0.74 5.43 -17.43 -0.09 0.65 16 18 N -0.90 -27.79 13.97 55.49 0.78 -27.01 16 19 Si 0.88 23.74 24.30 -169.99 -4.13 19.61 16 20 H -0.29 -7.57 6.74 56.52 0.38 -7.19 16 21 H -0.28 -7.61 6.74 56.52 0.38 -7.23 16 22 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 23 C 0.11 2.05 6.96 -2.53 -0.02 2.03 16 24 C 0.08 1.29 4.06 -24.58 -0.10 1.19 16 25 H 0.07 1.02 8.01 -51.93 -0.42 0.60 16 26 O -0.56 -7.78 13.47 -35.23 -0.47 -8.25 16 27 H 0.10 0.71 8.05 -52.49 -0.42 0.28 16 28 H 0.10 0.84 7.99 -52.49 -0.42 0.42 16 29 H 0.07 0.54 7.27 -51.93 -0.38 0.17 16 30 H 0.07 0.45 7.99 -51.93 -0.41 0.04 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.98 7.80 -51.93 -0.40 0.58 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.57 7.56 -51.93 -0.39 0.17 16 35 H 0.07 0.60 5.79 -51.93 -0.30 0.30 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.40 4.75 7.98 -40.82 -0.33 4.42 16 38 H 0.04 1.01 3.73 -51.93 -0.19 0.81 16 39 H 0.05 1.12 7.74 -51.92 -0.40 0.72 16 40 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.38 3.41 9.11 45.56 0.42 3.83 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -34.81 342.27 -6.10 -40.91 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.18 Total: 4.08 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -0.51 Total: 2.57 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.04 Total: -53.32 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.39 Total: -19.01 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -4.13 Total: 19.61 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.81 -6.10 -40.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195525110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.490 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds