Wall clock time and date at job start Tue Mar 31 2020 05:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 119.99737 * 2 1 4 4 C 1.50701 * 119.99818 * 180.02562 * 2 1 3 5 5 C 1.52993 * 109.47318 * 95.00274 * 4 2 1 6 6 H 1.09007 * 109.47209 * 54.99125 * 5 4 2 7 7 C 1.52999 * 109.46903 * 294.99871 * 5 4 2 8 8 C 1.50696 * 109.47693 * 174.99660 * 5 4 2 9 9 O 1.21285 * 119.99225 * 359.97438 * 8 5 4 10 10 N 1.34774 * 120.00647 * 179.97438 * 8 5 4 11 11 C 1.46496 * 120.00314 * 179.97438 * 10 8 5 12 12 H 1.09004 * 110.88333 * 31.12478 * 11 10 8 13 13 C 1.54905 * 111.00660 * 267.20088 * 11 10 8 14 14 N 1.47430 * 104.83321 * 204.91540 * 13 11 10 15 15 C 1.36937 * 125.64759 * 204.08433 * 14 13 11 16 16 H 1.07992 * 120.00218 * 354.83887 * 15 14 13 17 17 C 1.38812 * 119.99528 * 174.83691 * 15 14 13 18 18 N 1.31623 * 120.00411 * 7.05206 * 17 15 14 19 19 Si 1.86806 * 119.99727 * 187.05038 * 17 15 14 20 20 H 1.48500 * 109.46738 * 94.99097 * 19 17 15 21 21 H 1.48496 * 109.47020 * 214.98920 * 19 17 15 22 22 H 1.48496 * 109.47193 * 334.98853 * 19 17 15 23 23 C 1.47022 * 108.70014 * 24.12330 * 14 13 11 24 24 C 1.54330 * 107.27247 * 358.94608 * 23 14 13 25 25 H 1.09004 * 110.71831 * 96.16343 * 24 23 14 26 26 O 1.42894 * 110.86804 * 219.36827 * 24 23 14 27 27 H 1.07999 * 120.00202 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.99915 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47285 * 90.00417 * 3 2 1 30 30 H 1.08994 * 109.47588 * 329.99879 * 3 2 1 31 31 H 1.09001 * 109.46815 * 209.99864 * 3 2 1 32 32 H 1.09004 * 109.46801 * 214.99643 * 4 2 1 33 33 H 1.08991 * 109.47063 * 334.99585 * 4 2 1 34 34 H 1.09005 * 109.47550 * 59.99622 * 7 5 4 35 35 H 1.09007 * 109.47439 * 179.97438 * 7 5 4 36 36 H 1.09001 * 109.47254 * 299.99678 * 7 5 4 37 37 H 0.96999 * 119.99689 * 0.02562 * 10 8 5 38 38 H 1.09000 * 110.36921 * 323.75609 * 13 11 10 39 39 H 1.09002 * 110.36671 * 86.07623 * 13 11 10 40 40 H 0.96993 * 119.99965 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.88793 * 239.52451 * 23 14 13 42 42 H 1.09007 * 110.00358 * 118.42998 * 23 14 13 43 43 H 0.96699 * 114.00054 * 293.60454 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 1 2.9770 -0.8638 -1.9010 7 6 1.1488 -1.9538 -2.2332 8 6 3.2854 -2.9222 -1.4293 9 8 3.5774 -3.4503 -0.3773 10 7 3.7281 -3.4432 -2.5907 11 6 4.5626 -4.6473 -2.5825 12 1 4.3081 -5.2907 -1.7402 13 6 6.0674 -4.2799 -2.5668 14 7 6.7468 -5.4458 -3.1606 15 6 8.0525 -5.8009 -2.9508 16 1 8.6996 -5.1607 -2.3698 17 6 8.5444 -6.9840 -3.4850 18 7 7.8007 -7.6947 -4.3061 19 14 10.2619 -7.5674 -3.0384 20 1 10.1804 -8.5261 -1.9073 21 1 10.8777 -8.2375 -4.2119 22 1 11.0927 -6.4025 -2.6412 23 6 5.7903 -6.1636 -4.0160 24 6 4.4434 -5.4157 -3.9251 25 1 4.3308 -4.7216 -4.7580 26 8 3.3515 -6.3366 -3.8854 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 2.2452 1.6197 1.0276 30 1 1.4744 2.0647 -0.5138 31 1 3.0159 1.1748 -0.5138 32 1 2.9742 -1.1991 0.5889 33 1 1.4386 -2.0856 0.4334 34 1 0.5282 -1.0577 -2.2393 35 1 1.4080 -2.2228 -3.2572 36 1 0.5991 -2.7732 -1.7700 37 1 3.4949 -3.0206 -3.4320 38 1 6.2467 -3.3891 -3.1689 39 1 6.4088 -4.1223 -1.5437 40 1 8.1446 -8.5212 -4.6796 41 1 5.6707 -7.1871 -3.6608 42 1 6.1430 -6.1680 -5.0474 43 1 3.2338 -6.8424 -4.7011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195525111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:49 Heat of formation + Delta-G solvation = -54.651864 kcal Electronic energy + Delta-G solvation = -22635.013393 eV Core-core repulsion = 19294.976301 eV Total energy + Delta-G solvation = -3340.037092 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.96296 -38.08334 -36.74961 -35.06691 -34.06670 -32.89630 -31.54894 -28.41178 -27.51427 -27.22909 -26.92730 -24.63184 -23.19804 -20.55980 -20.34798 -19.82956 -18.54529 -17.28047 -16.95111 -16.51694 -15.75616 -15.43705 -14.85041 -14.78537 -14.19281 -14.15671 -14.01900 -13.51748 -13.31334 -13.08613 -12.70393 -12.68438 -12.36415 -12.14198 -12.04550 -11.88994 -11.51751 -11.38303 -11.25887 -11.12198 -11.01540 -10.89877 -10.81391 -10.15686 -9.89799 -9.86878 -9.65250 -9.30388 -9.15703 -8.79158 -8.60240 -6.91570 -5.78128 -3.11363 2.01468 2.84779 3.35220 3.40294 3.45267 3.46603 4.43283 4.57622 4.63161 4.68301 4.75969 4.92319 4.99840 5.18484 5.30243 5.32304 5.41956 5.43388 5.58540 5.61622 5.64081 5.67142 5.68306 5.73466 5.79063 5.83866 6.01506 6.07084 6.10326 6.14783 6.44887 6.54167 6.62326 6.70221 6.90860 7.30045 7.48117 7.70268 7.76185 8.11600 8.16907 8.45707 9.14283 9.74684 10.38223 11.34059 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029644 B = 0.003509 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.317178 B = 7977.449983 C = 8624.816427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 C -0.121 4.121 4 C -0.069 4.069 5 C -0.103 4.103 6 H 0.096 0.904 7 C -0.145 4.145 8 C 0.516 3.484 9 O -0.539 6.539 10 N -0.714 5.714 11 C 0.138 3.862 12 H 0.105 0.895 13 C 0.130 3.870 14 N -0.600 5.600 15 C -0.230 4.230 16 H 0.081 0.919 17 C -0.006 4.006 18 N -0.922 5.922 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.153 3.847 24 C 0.069 3.931 25 H 0.056 0.944 26 O -0.563 6.563 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.396 0.604 38 H 0.023 0.977 39 H 0.050 0.950 40 H 0.253 0.747 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.542 14.543 1.515 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.119 4.119 3 C -0.178 4.178 4 C -0.106 4.106 5 C -0.125 4.125 6 H 0.114 0.886 7 C -0.202 4.202 8 C 0.302 3.698 9 O -0.416 6.416 10 N -0.365 5.365 11 C 0.032 3.968 12 H 0.122 0.878 13 C 0.003 3.997 14 N -0.328 5.328 15 C -0.358 4.358 16 H 0.099 0.901 17 C -0.202 4.202 18 N -0.569 5.569 19 Si 0.744 3.256 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.027 3.973 24 C 0.009 3.991 25 H 0.074 0.926 26 O -0.368 6.368 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.230 0.770 38 H 0.040 0.960 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -14.239 14.219 2.814 20.318 hybrid contribution 0.883 -0.404 -0.915 1.334 sum -13.355 13.814 1.899 19.308 Atomic orbital electron populations 1.23698 0.95227 1.01716 1.03000 1.21774 0.95419 0.95661 0.99087 1.20880 1.00296 0.94466 1.02161 1.20490 1.00961 0.94182 0.94993 1.21217 0.96933 0.96159 0.98175 0.88574 1.21837 0.96252 1.02652 0.99505 1.20562 0.79896 0.85506 0.83856 1.90712 1.58052 1.61852 1.30948 1.45931 1.52594 1.29359 1.08575 1.22250 0.90910 0.85100 0.98525 0.87752 1.21850 0.89065 0.91242 0.97574 1.44241 1.08497 1.27214 1.52818 1.19091 0.84820 1.03275 1.28630 0.90117 1.24839 0.98767 0.97231 0.99405 1.69936 1.36621 1.16503 1.33823 0.86074 0.83300 0.78698 0.77563 1.21474 1.21736 1.20542 1.21824 0.84148 0.95469 0.95862 1.23451 0.88965 0.91002 0.95726 0.92606 1.86471 1.51164 1.56959 1.42170 0.88689 0.88437 0.91430 0.91965 0.91707 0.90242 0.90596 0.91181 0.92160 0.92078 0.77003 0.95969 0.93179 0.93641 0.91988 0.93538 0.77745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.62 12.49 29.01 0.36 -1.26 16 2 C -0.12 -1.06 4.79 -101.07 -0.48 -1.55 16 3 C -0.12 -0.91 10.03 36.00 0.36 -0.55 16 4 C -0.07 -0.75 4.20 -27.89 -0.12 -0.87 16 5 C -0.10 -1.11 2.71 -91.78 -0.25 -1.36 16 6 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 7 C -0.14 -1.31 8.72 37.16 0.32 -0.99 16 8 C 0.52 7.83 7.15 -10.99 -0.08 7.76 16 9 O -0.54 -10.52 15.56 5.55 0.09 -10.43 16 10 N -0.71 -10.61 5.09 -51.74 -0.26 -10.88 16 11 C 0.14 2.62 3.15 -65.79 -0.21 2.42 16 12 H 0.10 2.32 7.54 -51.93 -0.39 1.93 16 13 C 0.13 2.81 6.93 -2.53 -0.02 2.79 16 14 N -0.60 -15.47 3.39 -170.07 -0.58 -16.04 16 15 C -0.23 -6.48 10.27 -15.06 -0.15 -6.63 16 16 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 17 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 18 N -0.92 -26.81 10.36 55.49 0.57 -26.23 16 19 Si 0.91 22.18 29.56 -169.99 -5.02 17.16 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.15 3.64 5.16 -3.06 -0.02 3.62 16 24 C 0.07 1.27 3.97 -24.90 -0.10 1.17 16 25 H 0.06 0.90 8.00 -51.93 -0.42 0.49 16 26 O -0.56 -9.81 13.40 -35.23 -0.47 -10.28 16 27 H 0.09 0.66 8.04 -52.49 -0.42 0.23 16 28 H 0.10 0.78 7.99 -52.48 -0.42 0.36 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.40 8.06 -51.93 -0.42 -0.02 16 31 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.08 0.97 7.95 -51.93 -0.41 0.55 16 33 H 0.08 0.90 7.99 -51.93 -0.41 0.49 16 34 H 0.07 0.55 6.52 -51.93 -0.34 0.21 16 35 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.40 4.66 7.99 -40.82 -0.33 4.33 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.06 1.67 7.21 -51.93 -0.37 1.30 16 42 H 0.05 1.19 7.61 -51.93 -0.40 0.79 16 43 H 0.38 4.95 9.12 45.56 0.42 5.37 16 LS Contribution 350.30 15.07 5.28 5.28 Total: -1.00 -33.15 350.30 -7.26 -40.41 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.39 Total: 6.74 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -0.47 Total: 4.28 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.27 Total: -53.15 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.39 Total: -20.71 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.15 -7.26 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195525111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.245 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds